View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1156_low_4 (Length: 454)
Name: NF1156_low_4
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1156_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 30 - 441
Target Start/End: Complemental strand, 2516067 - 2515656
Alignment:
| Q |
30 |
ctttataccaccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgtt |
129 |
Q |
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| T |
2516067 |
ctttataccaccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgtt |
2515968 |
T |
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| Q |
130 |
attgttagagaataaaagcatttacttccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcgt |
229 |
Q |
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| T |
2515967 |
attgttagagaataaaagcatttacttccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcat |
2515868 |
T |
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| Q |
230 |
tcacatgtatggtatactccaacaccgacacatcacatgtgattacattcaatcagnnnnnnnctcgacgcgtcctgtgtttgtgtcggtacttcatagg |
329 |
Q |
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| T |
2515867 |
tcacatgtatggtatactccaacaccgacacatcacatgtgattacattcaatcagtttttttctcgacgcgtcctgtgtttgtgtcggtacttcatagg |
2515768 |
T |
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| Q |
330 |
ttctaaatttccctaattacaataacaacaatcaaggtctaagttcaccaaatatcttacaaaatttcagttatggaagaagtgtatacgtagttagcct |
429 |
Q |
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| T |
2515767 |
ttctaaatttccctaattacaataacaacaatcaaggtcttagttcaccaaatatcttacaatatttcagttatggaagaagtgtatacgtagttagcct |
2515668 |
T |
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| Q |
430 |
aaatgaggagaa |
441 |
Q |
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| T |
2515667 |
aaatgaggagaa |
2515656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 2496446 - 2496344
Alignment:
| Q |
73 |
atatgatgagac-tgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttccttttctgcattgt |
171 |
Q |
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|||||||||||| ||||||||||||| | ||||||||||| |||| | ||| ||||||||| |||| ||||||||||||| ||| | ||| |||||||| |
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| T |
2496446 |
atatgatgagacctgtgttcctgatagttcagggagctgtataatgtatta--gtgttattgatagaaaataaaagcatttgcttgcctttgtgcattgt |
2496349 |
T |
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| Q |
172 |
catct |
176 |
Q |
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||||| |
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| T |
2496348 |
catct |
2496344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 2517070 - 2517022
Alignment:
| Q |
321 |
cttcataggttctaaatttccctaattacaataacaacaatcaaggtct |
369 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2517070 |
cttcataggttttgaatttccctaattacaataacaacaatcaaggtct |
2517022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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