View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1156_low_6 (Length: 439)

Name: NF1156_low_6
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1156_low_6
NF1156_low_6
[»] chr1 (2 HSPs)
chr1 (99-397)||(4640653-4640951)
chr1 (161-211)||(11469509-11469559)
[»] chr5 (1 HSPs)
chr5 (161-349)||(4554858-4555045)
[»] chr6 (2 HSPs)
chr6 (159-226)||(34034404-34034470)
chr6 (30-133)||(34034539-34034642)
[»] chr4 (3 HSPs)
chr4 (30-133)||(22499548-22499651)
chr4 (159-226)||(22499720-22499786)
chr4 (161-211)||(6247214-6247264)
[»] chr8 (1 HSPs)
chr8 (161-211)||(12350221-12350271)
[»] chr2 (2 HSPs)
chr2 (264-310)||(41519719-41519765)
chr2 (402-431)||(43854437-43854466)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 99 - 397
Target Start/End: Complemental strand, 4640951 - 4640653
Alignment:
Q  99 tgaatggttttgtatcttgtgcaaagtagcagatcttcaattctgaatgaannnnnnnnatatgatgttatgtttttatttattcatgtttaactatttg 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||         |||||||||||| |||||||||||||||||||||||||||    
T  4640951 tgaatggttttgtatcttgtacaaagtagcagatcttcaattctgactgaattttttttctatgatgttatggttttatttattcatgtttaactatttg 4640852  T
Q  199 tcacttgtagagagaatcacaagtccatagaaattttgtcagtagagataagaggatttactacctcatacatggttctttgttttaattgtgaaatttt 298  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4640851 tcacttgtagagagaatcataagtccatagaaattttgtcagtagagacaagaggatttactacctcatacatggttctttgttttaattgtgaaatttt 4640752  T
Q  299 gtcattgaaatttcaatgacagtgataaggcaatgaattttggaaaatcaannnnnnnnaggtttgaaggagatgaagaaaaagagttggagcaacagc 397  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  4640751 gtcattgaaatttcaatgacagtgataaggcaatggattttggaaaatcaattttttttaggtttgaaggagatgaagaaaaagagttggagcaacagc 4640653  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 11469509 - 11469559
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 211  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  11469509 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 11469559  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 161 - 349
Target Start/End: Complemental strand, 4555045 - 4554858
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccatagaaattttgtcagtagagataagaggatttact 260  Q
    |||||||||||||| ||||||| |||||||| ||||||||| ||||||||| ||||||| | |||  |||||||||||  || ||| ||| | || ||||    
T  4555045 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagagaaaatcacatgcccaaggaaattttgtccctatagaaaagggtatctact 4554946  T
Q  261 acctcatacatggttctttgttttaattgtgaaattttgtcattgaaatttcaatgacagtgataaggcaatgaattttggaaaatcaa 349  Q
    |||||||||| |||||||  ||||||| |||||||||||  |||||| ||  | |||| |||| |||| ||||  ||||||||||||||    
T  4554945 acctcatacacggttcttcattttaatagtgaaattttgctattgaagttgaactgacggtgacaagggaatg-gttttggaaaatcaa 4554858  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 34034470 - 34034404
Alignment:
Q  159 tatgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 226  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  34034470 tatgatgtta-gttttaatttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 34034404  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 34034642 - 34034539
Alignment:
Q  30 ggtttttcagtttgggggaattggattcagggattagagagaagcagaagctcaatgaaaattttgtcatgaatggttttgtatcttgtgcaaagtagca 129  Q
    |||||||||||||||||||||||  ||||| | ||| ||||||||| ||| |||||| || ||||  ||||||||||||| ||| |||| ||||||||||    
T  34034642 ggtttttcagtttgggggaattgtcttcagaggttaaagagaagcacaagttcaatggaatttttaacatgaatggttttttatgttgtacaaagtagca 34034543  T
Q  130 gatc 133  Q
    ||||    
T  34034542 gatc 34034539  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 22499548 - 22499651
Alignment:
Q  30 ggtttttcagtttgggggaattggattcagggattagagagaagcagaagctcaatgaaaattttgtcatgaatggttttgtatcttgtgcaaagtagca 129  Q
    |||||||||||||||||||||||  ||||| | ||| ||||||||| ||| |||||| || ||||  ||||||||||||| ||| |||| ||||||||||    
T  22499548 ggtttttcagtttgggggaattgtcttcagaggttaaagagaagcacaagttcaatggaatttttaacatgaatggttttttatgttgtacaaagtagca 22499647  T
Q  130 gatc 133  Q
    ||||    
T  22499648 gatc 22499651  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 22499720 - 22499786
Alignment:
Q  159 tatgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 226  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  22499720 tatgatgtta-gttttaatttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 22499786  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 6247214 - 6247264
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 211  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  6247214 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 6247264  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 12350271 - 12350221
Alignment:
Q  161 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 211  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  12350271 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 12350221  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 41519719 - 41519765
Alignment:
Q  264 tcatacatggttctttgttttaattgtgaaattttgtcattgaaatt 310  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||    
T  41519719 tcatacatggttcttcattttaattgtgaaattttgccattgaaatt 41519765  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 43854437 - 43854466
Alignment:
Q  402 gctttaggtgatgttgcatttgcctatgct 431  Q
    ||||||||||||||||||||||||||||||    
T  43854437 gctttaggtgatgttgcatttgcctatgct 43854466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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