View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1156_low_7 (Length: 408)

Name: NF1156_low_7
Description: NF1156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1156_low_7
NF1156_low_7
[»] chr3 (11 HSPs)
chr3 (95-380)||(1931257-1931542)
chr3 (122-286)||(1937177-1937341)
chr3 (141-319)||(1907287-1907465)
chr3 (132-265)||(1891270-1891403)
chr3 (141-319)||(1897841-1898019)
chr3 (141-307)||(2931621-2931787)
chr3 (128-207)||(1940846-1940925)
chr3 (125-202)||(968385-968462)
chr3 (125-192)||(1007163-1007230)
chr3 (125-192)||(1022191-1022258)
chr3 (127-168)||(989103-989144)
[»] scaffold0200 (1 HSPs)
scaffold0200 (157-209)||(1053-1105)
[»] chr7 (1 HSPs)
chr7 (146-194)||(1078464-1078512)
[»] chr5 (1 HSPs)
chr5 (157-209)||(41973745-41973797)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 95 - 380
Target Start/End: Complemental strand, 1931542 - 1931257
Alignment:
Q  95 caaggtggtccttgttttacaaggacaacatggtaattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaa 194  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1931542 caaggtggtggttgttttacaaggacaacatggtaattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaa 1931443  T
Q  195 aaattcccctttggttttaattcttggcaagtagtgggaaaatgtgtaggtggtacgattaattggttggttgttaaagactatgataacaaacttcaac 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1931442 aaattcccctttggttttaattcttggcaagtagtgggaaaatgtgtaagtggtacgattaattggttggttgttaaagactatgataacaaacttcaac 1931343  T
Q  295 attgtatcgtttctcttcatttgggggacgaaacatataaagtagttccgatgcctcctgattatggagcggtagatggatatatt 380  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  1931342 attgtatcgtttctcttcatttgggggaggaaacatataaagtagtttagatgcctcctgattatggagcggtagatggatatatt 1931257  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 1937341 - 1937177
Alignment:
Q  122 acatggtaattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttggttttaattcttgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||| |||||||    | ||| |    
T  1937341 acatggtaattttgttgacaaccatgaagtgaaggttcatactttgggcaccaattgttggaaaagcattcaaaatatcccttttggttgcgttgctttg 1937242  T
Q  222 caagtagtgggaaaatgtgtaggtggtacgattaattggttggttgttaaagactatgataacaa 286  Q
    ||| |   |||||||| |||  |||| ||| | ||||||||||||| |||||| |||||||||||    
T  1937241 caaatttcgggaaaatttgttagtggcacgctcaattggttggttgctaaagagtatgataacaa 1937177  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 1907465 - 1907287
Alignment:
Q  141 aaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttggttttaattcttggcaagtagtgggaaaatgtg 240  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||| || ||||||| |  | ||| |||| |  ||||||||| ||    
T  1907465 aaccatgaggtgaaggttcatactttgggcaccaattcttggaaaaccattccaaaatttccttttggttgtgttcctttgcaatttttgggaaaatctg 1907366  T
Q  241 taggtggtacgattaattggttggttgttaaagactatgataacaaacttcaacattgtatcgtttctcttcatttggg 319  Q
    |  |||| || || ||||||||||||| || ||| || ||||||||| ||||| ||||||| ||||||||| |||||||    
T  1907365 tgagtggcaccatcaattggttggttgctagagagtacgataacaaatttcaagattgtattgtttctcttgatttggg 1907287  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 265
Target Start/End: Complemental strand, 1891403 - 1891270
Alignment:
Q  132 tttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttggttttaattcttggcaagtagtgg 231  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||| | |  | ||| |||| |  |||    
T  1891403 tttgttgacaaccatgaagtgaaggttcatactttgggcaccaattcttggaaaaccattcaaaaatttccttttggctgtgttcctttgcaacttttgg 1891304  T
Q  232 gaaaatgtgtaggtggtacgattaattggttggt 265  Q
    |||||| |||  |||| ||||| |||||||||||    
T  1891303 gaaaatttgtgagtggcacgatcaattggttggt 1891270  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 1898019 - 1897841
Alignment:
Q  141 aaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttggttttaattcttggcaagtagtgggaaaatgtg 240  Q
    |||||||| ||||| |||||| |||||| ||||||||||||||||| ||||| |||||| || ||||||| |  | ||| |||| |  ||||||||| ||    
T  1898019 aaccatgaggtgaatgttcattctttgggcaccaattcttggaaaaccattccaaaatttccttttggttgtgttcctttgcaatttttgggaaaatctg 1897920  T
Q  241 taggtggtacgattaattggttggttgttaaagactatgataacaaacttcaacattgtatcgtttctcttcatttggg 319  Q
    |  |||| || || ||||||||||||| || | | |||||||||||| ||||| ||||||| ||||||||| |||||||    
T  1897919 tgagtggcaccatcaattggttggttgctagatagtatgataacaaatttcaagattgtattgtttctcttgatttggg 1897841  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 307
Target Start/End: Original strand, 2931621 - 2931787
Alignment:
Q  141 aaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttggttttaattcttggcaagtagtgggaaaatgtg 240  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||| |||||| || ||||||| |  | ||| |||| |  ||||||||| ||    
T  2931621 aaccatgaggtgaaagttcatactttgggcaccaattcttggaaaaccattccaaaatttccttttggttgtgttcctttgcaatttttgggaaaatctg 2931720  T
Q  241 taggtggtacgattaattggttggttgttaaagactatgataacaaacttcaacattgtatcgtttc 307  Q
    |  |||| || || ||||||||||||| || | | || ||||||||| ||||| ||||||| |||||    
T  2931721 tgagtggcaccatcaattggttggttgctagaaagtaagataacaaatttcaagattgtattgtttc 2931787  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 1940925 - 1940846
Alignment:
Q  128 taattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttg 207  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||||||  ||||||||||||||| || ||||| ||||    
T  1940925 taattttgttgacagccatgaattgaaggttcatactttgggcaccaatgtttggaaaagcattcagaagttcccttttg 1940846  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 968385 - 968462
Alignment:
Q  125 tggtaattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattccc 202  Q
    ||||||||||||||| ||  |  |||||| |||||||||||||| ||||||| ||||| |||||||||| || |||||    
T  968385 tggtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcagaagttccc 968462  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 1007163 - 1007230
Alignment:
Q  125 tggtaattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattc 192  Q
    ||||||||||||| | ||  ||||||||||||||||||||||||   ||||||| |||||||| ||||    
T  1007163 tggtaattttgttaagaaagatgaagtgaaggttcatactttgggtgccaattcatggaaaagaattc 1007230  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 1022191 - 1022258
Alignment:
Q  125 tggtaattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattc 192  Q
    ||||||||||||| | ||  ||||||||||||||||||||||||   ||||||| |||||||| ||||    
T  1022191 tggtaattttgttaagaaagatgaagtgaaggttcatactttgggtgccaattcatggaaaagaattc 1022258  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 989103 - 989144
Alignment:
Q  127 gtaattttgttgacaaccatgaagtgaaggttcatactttgg 168  Q
    ||||||||||||||||  || |||||||||||||||||||||    
T  989103 gtaattttgttgacaaatataaagtgaaggttcatactttgg 989144  T

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Target: scaffold0200 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 1105 - 1053
Alignment:
Q  157 ttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttggt 209  Q
    ||||||||||||  ||||||| |||||||||||||||| ||||||| ||||||    
T  1105 ttcatactttgggtaccaatttttggaaaagcattcaagaattcccttttggt 1053  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 1078512 - 1078464
Alignment:
Q  146 tgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaa 194  Q
    |||||||||| ||||||| ||||  ||||||||||||||||||||||||    
T  1078512 tgaagtgaagattcatacattgggtaccaattcttggaaaagcattcaa 1078464  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 41973797 - 41973745
Alignment:
Q  157 ttcatactttggacaccaattcttggaaaagcattcaaaaattcccctttggt 209  Q
    ||||||||||||  ||||||| |||||||||||||||| ||||||| ||||||    
T  41973797 ttcatactttgggtaccaatttttggaaaagcattcaagaattcccttttggt 41973745  T

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