View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11570_low_1 (Length: 382)
Name: NF11570_low_1
Description: NF11570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11570_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 214 - 382
Target Start/End: Complemental strand, 9359737 - 9359569
Alignment:
| Q |
214 |
tagatagaatccctactagaagaaatcttgcacggcgtaattgtttatagccggaagtgtcttctacgtgtgttttttgtgggttagtggaagaatcgac |
313 |
Q |
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| T |
9359737 |
tagataggatccctactagaagaaatcttgcacggcataattgtttatcgccggaagtgtcttctaggtgtgttttttgtggattagtggaagaatcggc |
9359638 |
T |
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| Q |
314 |
taaccatcttttcttacattgcaattttacgactattgtttgggcaaggattatgaaatggcttgattt |
382 |
Q |
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| T |
9359637 |
taaccatcttttcttacattgcaatttcacgactattgtttgggcgagtgttatgaaatggcttgattt |
9359569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 9366543 - 9366493
Alignment:
| Q |
160 |
tatttggaatagtaaagcccctttgaaagtgatagctttctcttggaaact |
210 |
Q |
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| T |
9366543 |
tatttggaatagtaaagcccctttgaaagtgatagctttctcttggaaact |
9366493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 160 - 346
Target Start/End: Original strand, 43805104 - 43805292
Alignment:
| Q |
160 |
tatttggaatagtaaagcccctttgaaagtgatagctttctcttggaaactcctt--agatagaatccctactagaagaaatcttgcacggcgtaattgt |
257 |
Q |
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| T |
43805104 |
tatttgcaaaagtaaagctcctttgaaagtggtagctttctcttggaaacttcttctagatcggatccctactaaaagaaatcttgctatgcgtaattgt |
43805203 |
T |
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| Q |
258 |
ttatagccggaagtgtcttctacgtgtgttttttgtgggttagtggaagaatcgactaaccatcttttcttacattgcaattttacgac |
346 |
Q |
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| T |
43805204 |
ttaccgtcgaaagtgtcttctaggtgtgttatatgtgggattgcggaagaatcggcctaccatcttttctcacattgcaactttacgac |
43805292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 18233060 - 18233110
Alignment:
| Q |
160 |
tatttggaatagtaaagcccctttgaaagtgatagctttctcttggaaact |
210 |
Q |
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| T |
18233060 |
tatttggaaaagtaaagcccctttgaaagtgatagctttctcttggaaact |
18233110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 41195568 - 41195517
Alignment:
| Q |
159 |
atatttggaatagtaaagcccctttgaaagtgatagctttctcttggaaact |
210 |
Q |
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| T |
41195568 |
atatttggaaaagtaaagcccctttgaaagtggttgctttctattggaaact |
41195517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 24945194 - 24945295
Alignment:
| Q |
161 |
atttggaatagtaaagcccctttgaaagtgatagctttctcttggaaactcct--tagatagaatccctactagaagaaatcttgcacggcgtaattgtt |
258 |
Q |
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| T |
24945194 |
atttggaaaagcaaagctcctttgaaagtggtagcgttctcttggaagcttcttctagataggatcctttctcgaacaaatcttgctaggcgaaattgtt |
24945293 |
T |
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| Q |
259 |
ta |
260 |
Q |
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|| |
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| T |
24945294 |
ta |
24945295 |
T |
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