View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11570_low_3 (Length: 360)
Name: NF11570_low_3
Description: NF11570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11570_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 39763877 - 39764236
Alignment:
| Q |
1 |
tccttcttaaattctagttcttttttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcat |
100 |
Q |
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| T |
39763877 |
tccttcttaaattctagttcttttttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcat |
39763976 |
T |
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| Q |
101 |
tttccttatccatcagtttctctttcaactcctcaatttcggctttctttctttccaattcggactccctctgactcaattctgattttacccgttcgat |
200 |
Q |
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| T |
39763977 |
tttccttatccatcagtttctctttcaactcctcaatttcggctttctttctttccaattcggactccctctgactcaattctgattttacccgttcgat |
39764076 |
T |
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| Q |
201 |
caattcataggcattcctaatcttcaccgtgttctgaatctgttcttcttggaatttaatttcggcaatctcaatcgcagacctaagtagttcaacctca |
300 |
Q |
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| T |
39764077 |
caactcataggcattcctaatcttcaccgtgttctgaatctgttcttcttggaatttaatttcggcaatctcaatcgcagacctaagtagttcaacctca |
39764176 |
T |
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| Q |
301 |
gacctcaaagaacgaaactcgatttcaatgtgattagtactatcattcttttccaatctt |
360 |
Q |
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| T |
39764177 |
gacctcaaagaacgaaactcgatttcaatgtgattagtactatcattcttttccaatctt |
39764236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 39758158 - 39758500
Alignment:
| Q |
18 |
ttcttttttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagt |
117 |
Q |
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| T |
39758158 |
ttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttccttatccatcaat |
39758257 |
T |
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| Q |
118 |
ttctctttcaactcctcaatttcggctttctttctttccaattcggactccctctgactcaattctgattttacccgttcgatcaattcataggcattcc |
217 |
Q |
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| T |
39758258 |
ttctccttcaactcctcaattttggatttctttctatccaattcggattccctctgattcgattctgatttcatcctttcaatcaactcgtaagcattca |
39758357 |
T |
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| Q |
218 |
taatcttcaccgtgttctgaatctgttcttcttggaatttaatttcggcaatctcaatcgcagacctaagtagttcaacctcagacctcaaagaacgaaa |
317 |
Q |
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| T |
39758358 |
ttatcttcattgtgttctgaatcttttcctcctgtaatttagtttcaccaatctcaattgcagacctaagtagttcaacctcaaacctcaaagaatgaaa |
39758457 |
T |
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| Q |
318 |
ctcgatttcaatgtgattagtactatcattcttttccaatctt |
360 |
Q |
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| T |
39758458 |
ctcgatttcaatgtgattcgtactatcattcttttccaatctt |
39758500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 36927262 - 36927350
Alignment:
| Q |
269 |
tctcaatcgcagacctaagtagttcaacctcagacctcaaagaacgaaactcgatttcaatgtgattagtactatcattcttttccaat |
357 |
Q |
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|||||||| |||||| |||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
36927262 |
tctcaatcatagacctcagtagttcaaactcggacttcaaagaacgaaactcgatttaaatgtgattagtactatcattttcttccaat |
36927350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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