View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_high_10 (Length: 537)

Name: NF11571_high_10
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_high_10
NF11571_high_10
[»] chr3 (24 HSPs)
chr3 (295-519)||(3593265-3593489)
chr3 (19-225)||(3592973-3593195)
chr3 (295-517)||(18534120-18534337)
chr3 (295-517)||(3290821-3291038)
chr3 (407-505)||(30993012-30993108)
chr3 (109-229)||(15777308-15777425)
chr3 (37-105)||(24177968-24178036)
chr3 (295-353)||(18705368-18705426)
chr3 (295-501)||(39727465-39727658)
chr3 (295-494)||(9733334-9733527)
chr3 (380-517)||(12154701-12154837)
chr3 (436-517)||(12150617-12150697)
chr3 (40-77)||(32657336-32657373)
chr3 (451-517)||(3483955-3484021)
chr3 (151-228)||(6460042-6460118)
chr3 (295-346)||(15777215-15777265)
chr3 (151-229)||(9733591-9733668)
chr3 (452-517)||(10341438-10341501)
chr3 (451-517)||(15777058-15777124)
chr3 (109-178)||(18534437-18534506)
chr3 (436-514)||(18705220-18705298)
chr3 (109-178)||(30993253-30993323)
chr3 (44-77)||(32658589-32658622)
chr3 (380-492)||(10303029-10303141)
[»] chr8 (10 HSPs)
chr8 (295-517)||(42147609-42147827)
chr8 (295-517)||(40391564-40391781)
chr8 (109-229)||(17290631-17290751)
chr8 (436-517)||(17290913-17290994)
chr8 (451-517)||(6465969-6466035)
chr8 (451-517)||(9883981-9884047)
chr8 (295-353)||(17290819-17290877)
chr8 (37-105)||(42147378-42147446)
chr8 (295-352)||(9883813-9883870)
chr8 (304-353)||(15113413-15113462)
[»] chr6 (16 HSPs)
chr6 (359-517)||(9548970-9549128)
chr6 (295-517)||(19566573-19566791)
chr6 (358-517)||(13566378-13566536)
chr6 (382-517)||(13575483-13575618)
chr6 (382-517)||(13578022-13578157)
chr6 (295-516)||(19893060-19893276)
chr6 (358-517)||(13570925-13571083)
chr6 (295-517)||(19768747-19768957)
chr6 (109-229)||(9548761-9548880)
chr6 (330-504)||(19564941-19565110)
chr6 (437-517)||(12980180-12980260)
chr6 (295-375)||(12980339-12980414)
chr6 (109-178)||(19769046-19769117)
chr6 (295-342)||(9548951-9548998)
chr6 (380-494)||(15285685-15285799)
chr6 (437-478)||(14993804-14993845)
[»] chr5 (9 HSPs)
chr5 (295-517)||(21143619-21143835)
chr5 (380-517)||(32951762-32951898)
chr5 (430-504)||(39176711-39176785)
chr5 (402-517)||(32039884-32039999)
chr5 (109-229)||(39435924-39436043)
chr5 (436-517)||(26758380-26758460)
chr5 (109-179)||(39176448-39176520)
chr5 (451-506)||(26658884-26658939)
chr5 (451-506)||(26930473-26930528)
[»] chr2 (10 HSPs)
chr2 (295-517)||(20263394-20263607)
chr2 (295-517)||(32623287-32623504)
chr2 (295-514)||(16093714-16093928)
chr2 (358-517)||(27386641-27386800)
chr2 (109-229)||(16093532-16093651)
chr2 (131-225)||(27386908-27387002)
chr2 (133-229)||(32623568-32623664)
chr2 (39-82)||(16093423-16093466)
chr2 (44-105)||(20180863-20180923)
chr2 (149-229)||(20263671-20263751)
[»] chr7 (16 HSPs)
chr7 (295-517)||(18147320-18147530)
chr7 (295-513)||(33721432-33721639)
chr7 (359-515)||(34707315-34707473)
chr7 (295-516)||(11508397-11508613)
chr7 (295-516)||(32945499-32945715)
chr7 (354-513)||(3311162-3311321)
chr7 (436-516)||(11799784-11799864)
chr7 (302-513)||(3312834-3313041)
chr7 (109-220)||(32945355-32945463)
chr7 (43-178)||(3310877-3311014)
chr7 (113-178)||(3312651-3312715)
chr7 (443-502)||(11315763-11315822)
chr7 (39-105)||(21859820-21859885)
chr7 (109-229)||(18147571-18147691)
chr7 (121-168)||(13695873-13695920)
chr7 (111-168)||(13696071-13696128)
[»] chr4 (20 HSPs)
chr4 (302-502)||(13883992-13884187)
chr4 (359-517)||(18873787-18873944)
chr4 (295-517)||(14645942-14646159)
chr4 (109-229)||(23974129-23974249)
chr4 (114-229)||(19611888-19612003)
chr4 (296-506)||(11153979-11154177)
chr4 (438-516)||(19611591-19611669)
chr4 (113-229)||(25126202-25126318)
chr4 (114-228)||(15706694-15706808)
chr4 (432-515)||(21415009-21415092)
chr4 (436-517)||(15706954-15707035)
chr4 (295-375)||(19611749-19611824)
chr4 (402-517)||(23974432-23974547)
chr4 (298-376)||(25126063-25126135)
chr4 (297-353)||(15706862-15706918)
chr4 (109-178)||(11153820-11153890)
chr4 (114-162)||(14645763-14645810)
chr4 (44-112)||(18552412-18552479)
chr4 (297-375)||(23974315-23974388)
chr4 (471-517)||(25125956-25126002)
[»] chr1 (15 HSPs)
chr1 (437-517)||(21499016-21499096)
chr1 (295-517)||(12786428-12786645)
chr1 (354-517)||(52274557-52274720)
chr1 (295-517)||(18513506-18513722)
chr1 (109-229)||(12786243-12786364)
chr1 (295-352)||(9131527-9131584)
chr1 (109-229)||(18513786-18513906)
chr1 (449-517)||(91928-91996)
chr1 (116-178)||(23632181-23632244)
chr1 (451-517)||(9131373-9131439)
chr1 (104-229)||(9131648-9131772)
chr1 (359-517)||(12483983-12484142)
chr1 (402-517)||(23631896-23632012)
chr1 (295-342)||(12484114-12484161)
chr1 (43-77)||(18513958-18513992)
[»] scaffold0005 (2 HSPs)
scaffold0005 (295-517)||(171131-171348)
scaffold0005 (114-162)||(171480-171527)
[»] scaffold0019 (2 HSPs)
scaffold0019 (354-513)||(183149-183311)
scaffold0019 (125-229)||(182966-183070)
[»] scaffold0281 (3 HSPs)
scaffold0281 (116-178)||(1859-1921)
scaffold0281 (402-517)||(2113-2228)
scaffold0281 (295-352)||(1994-2051)
[»] scaffold0088 (2 HSPs)
scaffold0088 (114-229)||(35456-35571)
scaffold0088 (402-517)||(35214-35330)
[»] scaffold0094 (1 HSPs)
scaffold0094 (109-168)||(48262-48321)
[»] scaffold0978 (2 HSPs)
scaffold0978 (436-517)||(3089-3170)
scaffold0978 (295-353)||(2995-3053)
[»] scaffold0323 (1 HSPs)
scaffold0323 (436-517)||(16589-16670)
[»] scaffold0394 (1 HSPs)
scaffold0394 (452-517)||(7183-7247)
[»] scaffold0815 (1 HSPs)
scaffold0815 (50-82)||(1279-1311)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 295 - 519
Target Start/End: Original strand, 3593265 - 3593489
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593265 atttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 3593364  T
Q  395 ctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacac 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593365 ctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacac 3593464  T
Q  495 atcttttctacctaattttactagt 519  Q
    |||||||||||||||||||| ||||    
T  3593465 atcttttctacctaattttattagt 3593489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 3592973 - 3593195
Alignment:
Q  19 aattgcagcaacagaaagggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactacacgtatg------ 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||          
T  3592973 aattgcagcaacagaaagggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacataaaccctgcactacacgtatgatcata 3593072  T
Q  113 -----------atgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcc 201  Q
               |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  3593073 caacccttatgatgaatagagactctccccttacctctagtttgccgaattgatgatttcctacggagaaatctctccatag-gttattctcgctattcc 3593171  T
Q  202 tccttgcctcttctctccacaacc 225  Q
    ||||||||||||||||||||||||    
T  3593172 tccttgcctcttctctccacaacc 3593195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 18534337 - 18534120
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||  ||||||| ||||| ||| |||||||||||||||||||||| |||||||   ||  |||||| ||||| ||||  || ||||||| |||||    
T  18534337 atttataaattctaattaagtttgttagcaatctttttaaattactatatttcctcta---ta--tttgttgctaatattttc-agattactatctgtac 18534244  T
Q  395 ctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
     ||||| ||||| || |||||||||| ||||||||| | ||||||||||  || ||  |||||||||||||| |||||||||||||| ||||||  ||      
T  18534243 gtctaagttttgttattattcttcctgtaactacattatctagctattcttacctccatctgcttaaatcattaaaacactactcagatcactagttatg 18534144  T
Q  494 catcttttctacctaattttacta 517  Q
    ||||||||||||| ||||||||||    
T  18534143 catcttttctacccaattttacta 18534120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 517
Target Start/End: Original strand, 3290821 - 3291038
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||| |     |||||| |||||||||||| |||| |  ||||||| || ||    
T  3290821 atttataagctctagttgagtttgttaccaatctttttaaattactatatgttc-----tctaggcttgttactaatc-ttttcaaattactatatgcac 3290914  T
Q  395 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||  | |||| || |||  ||  | ||||||||    || |||||||||||  ||||||  ||||||||| |||||||| |||| |||||||||||||    
T  3290915 ctctcgaatttgttattatcatttatgtaactacactgtcttgctattcacactcctctctatttaaatcattaaaacactgctcatctcactaactaca 3291014  T
Q  494 catcttttctacctaattttacta 517  Q
    | ||||||||||| ||||||||||    
T  3291015 cctcttttctacccaattttacta 3291038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 407 - 505
Target Start/End: Complemental strand, 30993108 - 30993012
Alignment:
Q  407 tactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctac 505  Q
    |||||||||| || |||||||| ||||| |||||||||||  |||| |||||||||||| ||||||||| |||||||| ||||||||| ||||||||||    
T  30993108 tactattctttctgtaactacaccaccttgctattcacac--ctctttgcttaaatcattaaaacactaatcagctcattaactacacctcttttctac 30993012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 15777425 - 15777308
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgc 208  Q
    ||||||||||| | |||||| |||||||||||||||||  || |||| | ||||||||||||||||||||  ||| ||  ||||||||||||||| ||||    
T  15777425 tatgatgaataaa-actccc-ccttacctctagtttgcaaaagtgataaattcctacggtgaaatctctctctaggttc-ttctcgctattcctctttgc 15777329  T
Q  209 ctcttctctccacaaccctag 229  Q
    || ||||||||| ||||||||    
T  15777328 ctattctctccataaccctag 15777308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 24178036 - 24177968
Alignment:
Q  37 ggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 105  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||    
T  24178036 ggacacgaatataacatgaattcattaaaagatcatgaaaaacaatggaaaataaaaacccttcactac 24177968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 18705426 - 18705368
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 353  Q
    |||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  18705426 atttataaactctaattgagtttgttaccaatatttttagattactatatgtcctctag 18705368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 501
Target Start/End: Complemental strand, 39727658 - 39727465
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||| |||||            ||||||||||  ||||||||  |  ||||||| || ||    
T  39727658 atttataagctctaattgagtttgttatcaatctttttagattattatat------------aggtttgttatcaatcttttcaaa-ttactatctgcac 39727572  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||| |||||| || ||||||| | | ||||||| | ||| |||||||||||  | |||| ||||||| || |||||||||||||||||||||||||||    
T  39727571 ctctatattttgttattattctttcgt-aactacaccgccttgctattcacactcccctctacttaaataattaaaacactactcagctcactaactaca 39727473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 494
Target Start/End: Complemental strand, 9733527 - 9733334
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    |||||||| |||||||||||| | ||||||||||||||| ||||||||||||||     || ||||||||||||||||  ||| |  ||||||| || ||    
T  9733527 atttataaactctaattgagtatgttaccaatctttttagattactatatgtcc-----tccaggtttgttactaatc--tttcaaattactatctgcac 9733435  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||| || ||| ||||||| || || || ||||| | ||| |||||||||||  |  ||| |||||||||| |||  |||||||  |||||||| ||||    
T  9733434 ctctatatattgttactattatttctgtagctacaccgccttgctattcacactcccatctacttaaatcattaaagtactactcgtctcactaattaca 9733335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 517
Target Start/End: Complemental strand, 12154837 - 12154701
Alignment:
Q  380 ggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactca 479  Q
    |||||||||| | ||||||| ||| | |||| |||||  | |||||||| |  || |||||||||||  | ||||||||||||||| ||||||||||||     
T  12154837 ggttactattcgcacctctattttggttactgttcttgttgtaactacaccgtcttgctattcacaccaccctctgcttaaatcattaaaacactactcc 12154738  T
Q  480 gctcactaactacacatcttttctacctaattttacta 517  Q
    | |||| |||||||||||||  ||||| ||||||||||    
T  12154737 gttcacaaactacacatcttccctacc-aattttacta 12154701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 517
Target Start/End: Complemental strand, 12150697 - 12150617
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||||| || ||||||||||||||| |||||||||||| | |||| |||||||| |||||  |||| ||||||||||    
T  12150697 gctattcacacctccctctgcttaaatcattaaaacactactccgttcacaaactacacctctttcatacc-aattttacta 12150617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 32657373 - 32657336
Alignment:
Q  40 cacaaatttaacatgaattcattaaaagatcatgaaaa 77  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32657373 cacaaatttaacatgaattcattaaaagatcatgaaaa 32657336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 3483955 - 3484021
Alignment:
Q  451 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||| |||||||||| ||| || |||||| |||||||||||||||| ||||||| | ||||||||||    
T  3483955 ctctacttaaatcattaaagcattactcatctcactaactacacatattttctatccaattttacta 3484021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 6460042 - 6460118
Alignment:
Q  151 ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaacccta 228  Q
    |||||||  ||||||| |||||||||||  |||||   |||||| ||| |||||||||||||||||||||||||||||    
T  6460042 ttgatgaaatcctacgatgaaatctctctctagatcc-ttctcgttatgcctccttgcctcttctctccacaacccta 6460118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 15777265 - 15777215
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgt 346  Q
    |||||||| |||||||||||||| |||||||||| |||| ||||||||||||    
T  15777265 atttataa-ctctaattgagtttgttaccaatctgtttagattactatatgt 15777215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 9733668 - 9733591
Alignment:
Q  151 ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 229  Q
    ||||||| ||||||| ||||||||||||  ||||||  |||||| | | |||||||| ||||| |||||||||||||||    
T  9733668 ttgatgaattcctactgtgaaatctctctctagattc-ttctcggtgtgcctccttgactcttttctccacaaccctag 9733591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 517
Target Start/End: Original strand, 10341438 - 10341501
Alignment:
Q  452 tctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||| |||| ||||||||||||| ||||||||||  || ||||||||| | ||||||||||    
T  10341438 tctgcttaattcattaaaacactactcatctcactaact--acctcttttctatccaattttacta 10341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 517
Target Start/End: Complemental strand, 15777124 - 15777058
Alignment:
Q  451 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||| |||||||||| |||  |||||||| ||  |||||||||| ||||||||||| ||||||||||    
T  15777124 ctctacttaaatcattaaagtactactcatcttgctaactacacctcttttctacccaattttacta 15777058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 18534506 - 18534437
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 178  Q
    |||| ||||||||||||||| |||||||||||||||  |||| |||||||||||||| |||  ||||||||    
T  18534506 tatggtgaatagagactccc-ccttacctctagttttgcgaaattgatgatttcctatggttgaatctctc 18534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 514
Target Start/End: Complemental strand, 18705298 - 18705220
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaatttta 514  Q
    |||||||||||  | ||||  ||||||||| ||| || |||||| |||||||||||||| ||||||||| | |||||||    
T  18705298 gctattcacactcccctctatttaaatcattaaagcattactcatctcactaactacacctcttttctatccaatttta 18705220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 30993323 - 30993253
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 178  Q
    |||| ||||||||||||||| ||||||||||||||||  ||| ||||||| ||| ||| ||||| ||||||    
T  30993323 tatggtgaatagagactccccccttacctctagtttggagaatttgatgaattcatacagtgaagtctctc 30993253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 32658589 - 32658622
Alignment:
Q  44 aatttaacatgaattcattaaaagatcatgaaaa 77  Q
    ||||||| ||||||||||||||||||||||||||    
T  32658589 aatttaaaatgaattcattaaaagatcatgaaaa 32658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 492
Target Start/End: Original strand, 10303029 - 10303141
Alignment:
Q  380 ggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactca 479  Q
    |||||||||| | ||||||| ||| | ||||||||||  | ||||| |  | ||| |||| |||||| ||  | ||||||| |||| |||||||||||||    
T  10303029 ggttactattcgcacctctattttggttactattcttgttgtaacttcgccgccttgctactcacacctccttatgcttaattcattaaaacactactca 10303128  T
Q  480 gctcactaactac 492  Q
     ||||||||||||    
T  10303129 tctcactaactac 10303141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 295 - 517
Target Start/End: Original strand, 42147609 - 42147827
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||      ||||||||||||||||||| |||||||| |||||||    
T  42147609 atttataagttataattgagtttgttaccaatctttttagattactatatgtcctctat-----gtttgttactaatctttttcaggttactgtttgtac 42147703  T
Q  395 ctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    |||||| ||||| ||||||||||| | |||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||    
T  42147704 ctctaaattttgttactattcttcgtgtaactacaacacctagctattcacacctccctctgcttaaatcattaaaacactactcagctcactaactaca 42147803  T
Q  494 catcttttctacctaattttacta 517  Q
    ||||||||||| | ||||||||||    
T  42147804 catcttttctatcaaattttacta 42147827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 295 - 517
Target Start/End: Original strand, 40391564 - 40391781
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||     ||||||||| ||| ||||||  |||||||||| ||    
T  40391564 atttataagctctaattgagtttgttaccaatctttttatattactatatgtcctctagt-----tttgttacttatc-tttttaaattactatttgcac 40391657  T
Q  395 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||  | |||| ||||||| ||  | |||||||| |  || | |||||||||  | |||| |||||||||| |||  | |||||| |||||||||||||    
T  40391658 ctctcgaatttgttactattatttttgtaactacaccgtcttgttattcacactcccctctacttaaatcattaaagtattactcatctcactaactaca 40391757  T
Q  494 catcttttctacctaattttacta 517  Q
    | || |||| ||| ||||||||||    
T  40391758 cctcatttcaacccaattttacta 40391781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 17290631 - 17290751
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 207  Q
    |||| ||||||||||||||| ||||||||||| |||   ||| ||||| ||||| |||||| |||||||||  ||| ||  |||||| ||||||||||||    
T  17290631 tatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatctctctctaggttc-ttctcgttattcctccttg 17290729  T
Q  208 cctcttctctccacaaccctag 229  Q
     |||||||||||||||||||||    
T  17290730 tctcttctctccacaaccctag 17290751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 17290913 - 17290994
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||| ||| || ||||||||||||||  ||| |||||||||||||||||||||||  ||||||||||| ||||||||||    
T  17290913 gctattcgcacctccctctgcttaaatcaataaagcactactcagctcactaactacatctcttttctacccaattttacta 17290994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 6465969 - 6466035
Alignment:
Q  451 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||||||||| |||||||| |||| || ||||| ||||| ||||||||||||||||||||||    
T  6465969 ctctgcttaaatcattaaaacacttctcatcttactaattacacctcttttctacctaattttacta 6466035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 9883981 - 9884047
Alignment:
Q  451 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||||||||||| |  |||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  9883981 ctctgcttaaataactaaaacactactcagctcactaactacacctcttttctaaccaattttacta 9884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 17290819 - 17290877
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 353  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||    
T  17290819 atttataagctctaattgagtttattacaaatatttttagattactatatgttctctag 17290877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 42147378 - 42147446
Alignment:
Q  37 ggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 105  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |||  |||||||||    
T  42147378 ggacacgaatgtaacatgaattcattaaaagatcatgaaaaacaatgaaaaataaaaaaccttcactac 42147446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 9883813 - 9883870
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctcta 352  Q
    ||||||||| | ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  9883813 atttataagttgtaattgagtttgttaccaatctttttagattactatatttcctcta 9883870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 15113413 - 15113462
Alignment:
Q  304 ctctaattgagtttattaccaatctttttaaattactatatgtcctctag 353  Q
    |||||||||||||| |||||||||||||||  ||||||||| | ||||||    
T  15113413 ctctaattgagtttgttaccaatctttttagcttactatatattctctag 15113462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 359 - 517
Target Start/End: Original strand, 9548970 - 9549128
Alignment:
Q  359 gtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgct 457  Q
    ||||||||| ||| || ||||| |||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||||||||| || |||| ||    
T  9548970 gtttgttaccaat-ttctttagattactatttgtacctctagattttgttactattcttcttgtaactacatcacctagctattcacacctccctctcct 9549068  T
Q  458 taaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9549069 taaatcattaaaacactactcagctcactaactacacctcttttctacccaattttacta 9549128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 19566791 - 19566573
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    || |||||||||||| ||||  |  |||  ||||||||    
T  19566791 atttataatctctaattgagtttgttaccaatctttttagattactatatgtcctcta----agttttgttactaatattttcaaa-ttatcatttgtac 19566697  T
Q  395 ctctaatttt-gatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    |||||||||| | |||||||||||  ||||||||| |||||  |||||||||| || |||| |||||||||| |||||||||||||||| ||||||||||    
T  19566696 ctctaatttttgttactattcttctcttaactacaccacctttctattcacacctccctctacttaaatcattaaaacactactcagctgactaactaca 19566597  T
Q  494 catcttttctacctaattttacta 517  Q
    | |||||||||   ||||||||||    
T  19566596 cttcttttctattcaattttacta 19566573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 358 - 517
Target Start/End: Original strand, 13566378 - 13566536
Alignment:
Q  358 ggtttgttactaatcttttttaggttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgc 456  Q
    |||||||||| |||||||| ||  ||||||| ||||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||    
T  13566378 ggtttgttacaaatcttttctaa-ttactatctgtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgc 13566476  T
Q  457 ttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
     |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  13566477 gtaaatcat-aaaacactactcagctcactaactacacctcttttctaccaaattttacta 13566536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 382 - 517
Target Start/End: Original strand, 13575483 - 13575618
Alignment:
Q  382 ttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcag 480  Q
    |||||||  |||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  13575483 ttactatcagtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgcttaaatcat-aaaacactactcag 13575581  T
Q  481 ctcactaactacacatcttttctacctaattttacta 517  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  13575582 ctcactaactacacctcttttctaccaaattttacta 13575618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 382 - 517
Target Start/End: Original strand, 13578022 - 13578157
Alignment:
Q  382 ttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcag 480  Q
    |||||||  |||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  13578022 ttactatcagtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgcttaaatcat-aaaacactactcag 13578120  T
Q  481 ctcactaactacacatcttttctacctaattttacta 517  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  13578121 ctcactaactacacctcttttctaccaaattttacta 13578157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 295 - 516
Target Start/End: Original strand, 19893060 - 19893276
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||      |||||||||||||||||  || ||||||| || ||    
T  19893060 atttataagctctaattgagtttgttaccaatctttttagattactatatgtcctctaga-----tttgttactaatcttttc-agattactatctgcac 19893153  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||| |||||||||||||| ||  | |||||||| |  |  |||||||||||  | |||| |||||||||| |||  |||||||| |||||||||||||    
T  19893154 ctctatattttgatactattatttatgtaactacaccgtcgtgctattcacactcccctctacttaaatcattaaagtactactcatctcactaactaca 19893253  T
Q  494 catcttttctacctaattttact 516  Q
    || ||||||| || |||||||||    
T  19893254 caacttttcttcccaattttact 19893276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 358 - 517
Target Start/End: Original strand, 13570925 - 13571083
Alignment:
Q  358 ggtttgttactaatcttttttaggttactatttgtacctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgc 456  Q
    |||||||||| |||||||| ||  ||||||| ||||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| || ||||||    
T  13570925 ggtttgttacaaatcttttctaa-ttactatctgtacctctaaattttgttactattcttcttgttactacatcacctagctattcacacctccctctgc 13571023  T
Q  457 ttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||| |||||| |||||| |||||||||||||| |||||||| || ||||||||||    
T  13571024 ttaaatcat-aaaacattactcatctcactaactacacctcttttcttccaaattttacta 13571083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 19768957 - 19768747
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||            ||||||||||| ||| ||||| || ||||||| || ||    
T  19768957 atttataagctctaattgagtttgttaccaatctttttagattactatat------------aggtttgttaccaatgttttt-agattactatctgcac 19768871  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||| |||||| ||||||||||    ||||| || |  || |||||||||||  | |||| ||||||| || |||||||||||||||||||||||||||    
T  19768870 ctctatattttgttactattcttttagtaactgcaccgacttgctattcacactcccctctacttaaataattaaaacactactcagctcactaactaca 19768771  T
Q  494 catcttttctacctaattttacta 517  Q
    | ||||||||| | ||||||||||    
T  19768770 cctcttttctatccaattttacta 19768747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 9548761 - 9548880
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagttt--gccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 206  Q
    ||||||||| |||||||||| ||||| |||||||||  ||  ||||||||||||||||||||||||||||||  ||  ||| |||||||||| |||||||    
T  9548761 tatgatgaacagagactccccccttatctctagtttttgcgaaattgatgatttcctacggtgaaatctctc--tacgttt-ttctcgctatgcctcctt 9548857  T
Q  207 gcctcttctctccacaaccctag 229  Q
    | |||||||||||||||||||||    
T  9548858 gtctcttctctccacaaccctag 9548880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 330 - 504
Target Start/End: Complemental strand, 19565110 - 19564941
Alignment:
Q  330 tttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacctctaa-ttttgatactattcttcctttaactaca 428  Q
    |||| |||||||||||||||     |||||||||||||||||| |||| || ||||||||||||||||||| ||||| ||| |||||||   ||||||||    
T  19565110 tttagattactatatgtcct-----ctaggtttgttactaatc-ttttcagattactatttgtacctctaatttttgttaccattcttctcctaactaca 19565017  T
Q  429 tcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttcta 504  Q
     |||||  |||||||||| || |||| |||||||||| ||||   ||||||| |||||| |||||| |||||||||    
T  19565016 ccacctttctattcacacctccctctacttaaatcattaaaatgatactcaggtcactagctacacttcttttcta 19564941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 437 - 517
Target Start/End: Complemental strand, 12980260 - 12980180
Alignment:
Q  437 ctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||||  | ||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| | ||||||||||    
T  12980260 ctattcacactcccctctgcttaaatcattaaagcactactcatctcactaactacacctcttttctatccaattttacta 12980180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 12980414 - 12980339
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttt 375  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||     |||||||||||||||||||||||    
T  12980414 atttataagctctaattgagtttgttatcaatctttttagatttctatatgtc-----gtctaggtttgttactaatcttt 12980339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 19769117 - 19769046
Alignment:
Q  109 tatgatgaatagagactccctcc-ttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctc 178  Q
    |||||||||||||||||||| || |||||||||||| |  ||||| ||||| ||||||||||||||||||||    
T  19769117 tatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctc 19769046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 9548951 - 9548998
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactat 342  Q
    ||||||||||||||||||||||| |||||||| | |||| ||||||||    
T  9548951 atttataagctctaattgagtttgttaccaatttctttagattactat 9548998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 494
Target Start/End: Complemental strand, 15285799 - 15285685
Alignment:
Q  380 ggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactca 479  Q
    ||||||||| || ||||||| ||| | |||||||||   | ||||||||   ||| ||||||||||| ||  |||| |||| |||| ||||||||| ||     
T  15285799 ggttactatctgcacctctattttcgttactattctcgttgtaactacactgccttgctattcacacctccttctgattaagtcattaaaacactaatcg 15285700  T
Q  480 gctcactaactacac 494  Q
    |||||||||||||||    
T  15285699 gctcactaactacac 15285685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 478
Target Start/End: Original strand, 14993804 - 14993845
Alignment:
Q  437 ctattcacacatctctctgcttaaatcatcaaaacactactc 478  Q
    |||||||||| || ||||||||||||||| ||||||||||||    
T  14993804 ctattcacacctccctctgcttaaatcattaaaacactactc 14993845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 21143835 - 21143619
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||     ||||||||||||| ||||  ||  ||||||||||||    
T  21143835 atttataagctctaattgagtttgttaccaatcttttcagattactatatgtcctctag-----gtttgttactaatattttc-agaatactatttgtac 21143742  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
     |||| |||||| || |||||||  | |||||| | ||||| |||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||    
T  21143741 atctagattttgttaatattctttttgtaactataccaccttgctattcacacatcactctgcttaaatcattaaaacaatactcagttcactaactaca 21143642  T
Q  494 catcttttctacctaattttacta 517  Q
    | | ||||||||||||||||||||    
T  21143641 cct-ttttctacctaattttacta 21143619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 380 - 517
Target Start/End: Original strand, 32951762 - 32951898
Alignment:
Q  380 ggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactca 479  Q
    |||||||||||| ||||||| ||| | ||||||||||  | ||||| |  | ||| |||||||||||||| ||||| ||||||||| |||||||||||||    
T  32951762 ggttactatttgcacctctattttggttactattcttgttgtaacttctccgccttgctattcacacatccctctgtttaaatcattaaaacactactca 32951861  T
Q  480 gctcactaactacacatcttttctacctaattttacta 517  Q
     |||||| ||||||| |||||||| || ||||||||||    
T  32951862 tctcact-actacacctcttttcttcccaattttacta 32951898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 430 - 504
Target Start/End: Original strand, 39176711 - 39176785
Alignment:
Q  430 cacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttcta 504  Q
    ||||||||||||||||| || ||| ||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  39176711 cacctagctattcacacctccctccgcttaaatcattaaaacactacccaactcactaactacacatcttttcta 39176785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 402 - 517
Target Start/End: Original strand, 32039884 - 32039999
Alignment:
Q  402 tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatctttt 501  Q
    |||| ||||||| || || |||||||| |  || |||||||||||  | |||| |||||||||| ||| ||||||||| ||  |||||||||||||||||    
T  32039884 tttgttactattatttctataactacaccgtcttgctattcacactcccctctacttaaatcattaaagcactactcatcttgctaactacacatctttt 32039983  T
Q  502 ctacctaattttacta 517  Q
    ||||| ||||||||||    
T  32039984 ctacccaattttacta 32039999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 39436043 - 39435924
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 207  Q
    |||| ||||||||||||||| |||||||||||||||   ||| ||||||||||||||||||||||||||||  |||| || ||||  |||| ||| ||||    
T  39436043 tatggtgaatagagactccc-ccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctctttaga-ttcttcttactatgccttcttg 39435946  T
Q  208 cctcttctctccacaaccctag 229  Q
    | ||||||||||| || |||||    
T  39435945 catcttctctccaaaatcctag 39435924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 517
Target Start/End: Complemental strand, 26758460 - 26758380
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||||||||||  | ||||||||||||||| |||||||||||  | |||| |||||||| ||||| ||||| ||||||||||    
T  26758460 gctattcacacccccctctgcttaaatcattaaaacactacttcgttcacaaactacacctctttcctacc-aattttacta 26758380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 39176448 - 39176520
Alignment:
Q  109 tatgatgaatagagactccctcc-ttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctcc 179  Q
    ||||||||||||||||| || || |||||||||||||  |||| |||||||||| ||| ||||||||||||||    
T  39176448 tatgatgaatagagacttcccccattacctctagttttgcgaaattgatgattttctatggtgaaatctctcc 39176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 506
Target Start/End: Original strand, 26658884 - 26658939
Alignment:
Q  451 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacc 506  Q
    |||| |||||||||| ||| ||||||||| |||||| ||||||| |||||||||||    
T  26658884 ctctacttaaatcattaaagcactactcatctcacttactacacctcttttctacc 26658939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 506
Target Start/End: Original strand, 26930473 - 26930528
Alignment:
Q  451 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacc 506  Q
    |||| |||||||||| ||| ||||||||| |||||| ||||||| |||||||||||    
T  26930473 ctctacttaaatcattaaagcactactcatctcacttactacacctcttttctacc 26930528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 20263607 - 20263394
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    |||||| |||||||||||||||| |||||||||||| || ||||||    ||||| |||     ||||||||||||||||||  |  |||||||||||||    
T  20263607 atttattagctctaattgagtttgttaccaatctttatagattact----gtcctttag-----gtttgttactaatcttttcaaa-ttactatttgtac 20263518  T
Q  395 ctctaa-ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    |||||| ||||| |  ||| |||| | |||||||||||||||||||||||||| || |||||||||| |||| |||||||| ||||||||||||||||||    
T  20263517 ctctaaattttgtttatatacttcttctaactacatcacctagctattcacacctccctctgcttaagtcattaaaacacttctcagctcactaactaca 20263418  T
Q  494 catcttttctacctaattttacta 517  Q
    | ||||||||||| ||||||||||    
T  20263417 cctcttttctacccaattttacta 20263394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 32623504 - 32623287
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||| ||||||| ||||| | || |||||||||| ||||||||||||| |||||     ||||||||||||||||||  |  ||| ||| || ||    
T  32623504 atttataaggtctaattaagtttgtcactaatctttttagattactatatgtcatctag-----gtttgttactaatcttttcaaa-ttattatctgcac 32623411  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||  | |||| ||||||| || || || ||||| |  ||  ||||||||||  | |||| |||||||||| ||| ||||||||| |||||||||||||    
T  32623410 ctcttgaatttgttactattatttctgtagctacaccgtcttactattcacactcccctctacttaaatcattaaagcactactcatctcactaactaca 32623311  T
Q  494 catcttttctacctaattttacta 517  Q
    | ||||||||||||||| ||||||    
T  32623310 cctcttttctacctaatgttacta 32623287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 295 - 514
Target Start/End: Original strand, 16093714 - 16093928
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||     |||| |||| |||||||| ||||| |  ||||||| || ||    
T  16093714 atttataaactctaattgagtttgttacctatctttttaaattactatatgtcc-----tctaagttttttactaat-tttttcaaattactatctgcac 16093807  T
Q  395 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||  | |||| ||||||| || || ||| || | |  || |||||||||||  | |||| ||||| |||| ||| ||||||||| |||| ||||||||    
T  16093808 ctctcgaatttgttactattatttctgtaattataccgtcttgctattcacactcccctctacttaactcattaaagcactactcatctcattaactaca 16093907  T
Q  494 catcttttctacctaatttta 514  Q
    | ||| ||||||| |||||||    
T  16093908 cctctattctacccaatttta 16093928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 517
Target Start/End: Complemental strand, 27386800 - 27386641
Alignment:
Q  358 ggtttgttactaatcttttttaggttactatttgtacctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgc 456  Q
    |||||||||||||||||||  |  ||||||| || |||||| || |||| ||||||| || || ||||||||||  || |||||||||||  | | || |    
T  27386800 ggtttgttactaatcttttcaaa-ttactatctgcacctctcaaatttgttactattatttctgtaactacatcgtcttgctattcacactccccactac 27386702  T
Q  457 ttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||||| || ||| ||||||||| |||||||||||||| || |||||||| ||||||||||    
T  27386701 ttaaattattaaagcactactcatctcactaactacacctcatttctaccaaattttacta 27386641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 16093532 - 16093651
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgc 208  Q
    |||| |||||||||||||||  ||||||||||||||||  || |||||| || |||| ||||||||||||  |||  ||  ||||||||||| || ||||    
T  16093532 tatggtgaatagagactcccctcttacctctagtttgcaaaagtgatgaatttctacagtgaaatctctctctag-gttcctctcgctattcatctttgc 16093630  T
Q  209 ctcttctctccacaaccctag 229  Q
    || ||||||||| ||||||||    
T  16093631 cttttctctccataaccctag 16093651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 27387002 - 27386908
Alignment:
Q  131 cttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaacc 225  Q
    ||||||||||||||  |||| || ||||||| |||||||||||||||||  ||| ||  ||||||| || ||||||||||||||||||||||||||    
T  27387002 cttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttc-ttctcgccatgcctccttgcctcttctctccacaacc 27386908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 32623664 - 32623568
Alignment:
Q  133 tacctctagttt-gccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 229  Q
    |||||||||||| ||  |||||||||||| |||||||||||||||||  |||| || |||||| |||||||| ||||||||||  |||| ||||||||    
T  32623664 tacctctagttttgcaaaattgatgattttctacggtgaaatctctctctaga-ttcttctcgttattcctctttgcctcttcattccataaccctag 32623568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 16093423 - 16093466
Alignment:
Q  39 acacaaatttaacatgaattcattaaaagatcatgaaaaacaat 82  Q
    |||| |||||||||||  ||||||||||||||||||||||||||    
T  16093423 acacgaatttaacatggtttcattaaaagatcatgaaaaacaat 16093466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 20180863 - 20180923
Alignment:
Q  44 aatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 105  Q
    ||||||||||||||||||||||| |||||||||  ||||  |||||| || |||||||||||    
T  20180863 aatttaacatgaattcattaaaa-atcatgaaacccaatagaaaacaaaagctcttcactac 20180923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 20263751 - 20263671
Alignment:
Q  149 aattgatgatttcctacggt-gaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaaccctag 229  Q
    ||||||||| |||||||||| ||||||||||  ||||||  |||||| | | |||||||| ||||| |||||||||||||||    
T  20263751 aattgatgaattcctacggtagaaatctctctttagattc-ttctcggtgtgcctccttgactcttttctccacaaccctag 20263671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 18147530 - 18147320
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||            ||||||||||| ||||||||  || ||||||| || ||    
T  18147530 atttataagctctaattgagtttgttaccaatctttttagattactatat------------aggtttgttaccaatcttttc-agattactatctgcac 18147444  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||| |||||| |||||||||| |  |||||||| |  || |||||||||||  | |||| ||||||| || |||||||||||||||||||| ||||||    
T  18147443 ctctatattttgttactattctttcagtaactacaccgacttgctattcacactcccctctacttaaataattaaaacactactcagctcactcactaca 18147344  T
Q  494 catcttttctacctaattttacta 517  Q
    ||||||||||| | ||||||||||    
T  18147343 catcttttctatccaattttacta 18147320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 295 - 513
Target Start/End: Original strand, 33721432 - 33721639
Alignment:
Q  295 atttataagctctaattga-gtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgta 393  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||| |||     | | || ||||||||||||||||||  || ||| ||||||||    
T  33721432 atttataagctctaatttaagtttattaccaatctttttagattactatgtgt-----attataagtttgttactaatcttttg-agattattatttgta 33721525  T
Q  394 cctctaat-tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactac 492  Q
    |||||||  |||| ||||||        |||||||||||||||||||||||||  ||  ||| |||||||||| |||||||||||||||| |||||||||    
T  33721526 cctctaaaatttgttactatg-------taactacatcacctagctattcacatctccttctacttaaatcattaaaacactactcagcttactaactac 33721618  T
Q  493 acatcttttctacctaatttt 513  Q
    |||||||||||||| ||||||    
T  33721619 acatcttttctacccaatttt 33721639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 359 - 515
Target Start/End: Original strand, 34707315 - 34707473
Alignment:
Q  359 gtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctt-taactacatcacctagc-tattcacacatctctctg 455  Q
    ||||||||||||||||||  ||||||||||||||||||||| || ||| ||||||| ||  || |||||||| ||||| || || |||||| | ||||||    
T  34707315 gtttgttactaatcttttc-aggttactatttgtacctctagatcttgttactatttttttttataactacaccaccttgcgtactcacacctttctctg 34707413  T
Q  456 cttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttac 515  Q
    |||||||||| ||||||||||| |||||||||||||||| ||||||||||  ||||||||    
T  34707414 cttaaatcattaaaacactactgagctcactaactacacttcttttctacaaaattttac 34707473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 295 - 516
Target Start/End: Complemental strand, 11508613 - 11508397
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||     || |||||||||||||||| |||| || ||||||| || ||    
T  11508613 atttataagctctaattgagtttgttaccaatttttttagattactatatgtcc-----tccaggtttgttactaatc-ttttcagattactatctgcac 11508520  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||| || ||| ||||||| || || || ||||| | ||| |||||||||||  |  ||| |||||||||| |||  |||||||  |||||||||||||    
T  11508519 ctctatatattgttactattatttctgtagctacaccgccttgctattcacactcccatctacttaaatcattaaagtactactcgtctcactaactaca 11508420  T
Q  494 catcttttctacctaattttact 516  Q
    | |||||||  || |||||||||    
T  11508419 cctcttttcatcccaattttact 11508397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 295 - 516
Target Start/End: Original strand, 32945499 - 32945715
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||| |||| |||||| ||| |||||||||||  ||| ||||||||||||||      |||||||||||||||||  |  |||||||||| ||    
T  32945499 atttataagctttaatagagtttgttatcaatctttttatgttaatatatgtcctctaga-----tttgttactaatcttttc-atattactatttgcac 32945592  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||| |||||| ||||||| || || ||||||||    || |||||||||||  | |||| |||||||||| |||  |||||||| |||||||||||||    
T  32945593 ctctatattttgttactattatttctgtaactacactgtcttgctattcacactcccctctacttaaatcattaaagtactactcatctcactaactaca 32945692  T
Q  494 catcttttctacctaattttact 516  Q
    | |||||||| || |||||||||    
T  32945693 cctcttttcttcccaattttact 32945715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 354 - 513
Target Start/End: Original strand, 3311162 - 3311321
Alignment:
Q  354 tctaggtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctct 452  Q
    ||||||||||||||||||| |||  |  ||||||||||||| |||| |||||| |||||||||| || |||||||||||| | ||||||||||| ||  |    
T  3311162 tctaggtttgttactaatcatttcaaa-ttactatttgtacttctagattttgctactattctttctgtaactacatcactttgctattcacacctcctt 3311260  T
Q  453 ctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaatttt 513  Q
    ||||||||||||| |||| |||| ||| || |||||||| || | ||||||||| ||||||    
T  3311261 ctgcttaaatcattaaaatactattcatctaactaactataccttttttctacccaatttt 3311321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 436 - 516
Target Start/End: Complemental strand, 11799864 - 11799784
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttact 516  Q
    ||||||||||| |||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||| |||||||||    
T  11799864 gctattcacacctctctctgcttaaatcattaaaacaatactcatctcactaactacacctcttttctacccaattttact 11799784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 513
Target Start/End: Original strand, 3312834 - 3313041
Alignment:
Q  302 agctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacctcta-a 400  Q
    ||||||| |||||||| |||| |||||||||| |||||||| | | |     |||| |||||||||||||| |||  |  ||||||||||||| |||| |    
T  3312834 agctctatttgagtttgttactaatctttttagattactatgtttacc----tctatgtttgttactaatcatttcaaa-ttactatttgtacttctaga 3312928  T
Q  401 ttttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 500  Q
    ||||| |||||||||| || |||||||||||  | ||||||||||| ||  |||| ||||||||| |||| |||| ||||||||| ||||| || | |||    
T  3312929 ttttgctactattctttctgtaactacatcaatttgctattcacacctccttctgattaaatcattaaaatactattcagctcacgaactataccttttt 3313028  T
Q  501 tctacctaatttt 513  Q
    |||| | ||||||    
T  3313029 tctatccaatttt 3313041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 32945355 - 32945463
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 207  Q
    ||||||||||| | |||||| |||||||||||||||  |||| |||||||||||||||| ||||||||||| |   | || |||| |||||||||| |||    
T  32945355 tatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctcta---agttcttctggctattcctctttg 32945450  T
Q  208 cctcttctctcca 220  Q
    |||||||||||||    
T  32945451 cctcttctctcca 32945463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 3310877 - 3311014
Alignment:
Q  43 aaatttaacatgaattcattaaaagatcatgaaaaaca--atgtaaaacacaaactcttca--ctacacgtatgatgaatagagactccctccttacctc 138  Q
    ||||||||||| |||||||||||||||| ||||||  |  | | ||||||||||| |||||  | || | ||| |||||||||||||||| |||||||||    
T  3310877 aaatttaacataaattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcatacaacccttat-atgaatagagactccc-ccttacctc 3310974  T
Q  139 tagtttgccgaattgatgatttcctacggtgaaatctctc 178  Q
    ||||||| ||||||||||| ||||||| ||  ||||||||    
T  3310975 tagtttgtcgaattgatgacttcctactgttgaatctctc 3311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 3312651 - 3312715
Alignment:
Q  113 atgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctc 178  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||  ||||||||    
T  3312651 atgaatagagactccc-ccttatctctagtttgccgaattgatgacttcctacggttgaatctctc 3312715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 502
Target Start/End: Original strand, 11315763 - 11315822
Alignment:
Q  443 acacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttc 502  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||||||||  |||||||    
T  11315763 acacatccctctacttaaatcattaaaacactactcagctcactaactacatttcttttc 11315822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 21859885 - 21859820
Alignment:
Q  39 acacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactac 105  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||  ||||| ||||||||||||||    
T  21859885 acacaaatttaacacaaattcattaaaaaatcatgaaaaacaatg-gaaacaaaaactcttcactac 21859820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 18147691 - 18147571
Alignment:
Q  109 tatgatgaatagagactccctcc-ttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 206  Q
    |||||||||||||||||||| || |||||||||||| |  ||| ||||||| ||||||||| ||||||||||  |||| || |||||| | | ||| |||    
T  18147691 tatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctctctaga-ttcttctcggtgtgcct-ctt 18147594  T
Q  207 gcctcttctctccacaaccctag 229  Q
    | ||||| |||||||||||||||    
T  18147593 gactcttttctccacaaccctag 18147571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 13695873 - 13695920
Alignment:
Q  121 agactccctccttacctctagtttgccgaattgatgatttcctacggt 168  Q
    |||||| | |||||||||||||||||||||||||||| || |||||||    
T  13695873 agactctccccttacctctagtttgccgaattgatgaatttctacggt 13695920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 13696071 - 13696128
Alignment:
Q  111 tgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggt 168  Q
    ||||||| | |||||| | |||| ||||||||||||||||||||||| || |||||||    
T  13696071 tgatgaagatagactctccccttccctctagtttgccgaattgatgaatttctacggt 13696128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 302 - 502
Target Start/End: Complemental strand, 13884187 - 13883992
Alignment:
Q  302 agctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacctctaat 401  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||||     |||| |||  ||||||||  || ||||||||||||||||||||    
T  13884187 agctctaattgagtttgttaccaaactttttagattactatatgtcctctag-----gtttattaacaatcttttc-agattactatttgtacctctaat 13884094  T
Q  402 ttt-gatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 500  Q
    ||| | |||||||||||   |||||||| |||||  || ||||||| |  |||| |||||||||| |||||||||||||| ||||||||||||  |||||    
T  13884093 ttttgttactattcttctcgtaactacaccacctttcttttcacaccttcctctacttaaatcattaaaacactactcagttcactaactacaattcttt 13883994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 359 - 517
Target Start/End: Original strand, 18873787 - 18873944
Alignment:
Q  359 gtttgttactaatcttttttaggttactatttgtacctctaattttgatactattcttcctttaactacatcacctagctattcacacatctctctgctt 458  Q
    |||||||| |||||||||  || ||||||| ||||||||||| |||| ||||| |||| ||  | ||||| | |||  |||||| ||| || |||| |||    
T  18873787 gtttgttattaatcttttc-agattactatatgtacctctaagtttgttactaatctttctgcagctacaccgcctttctattctcacctccctctactt 18873885  T
Q  459 aaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18873886 aaatcattaaaacactactcagctcactaactacacctcttttctacctaattttacta 18873944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 295 - 517
Target Start/End: Original strand, 14645942 - 14646159
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    |||||||| |||||||||||||| |||||||| |||||| ||| |||||||| ||||||     ||||||||||||||||||  |  ||||||| || ||    
T  14645942 atttataatctctaattgagtttgttaccaatttttttagatttctatatgttctctag-----gtttgttactaatcttttcaaa-ttactatatgcac 14646035  T
Q  395 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    |||| || |||| ||||||| || || |||||| | |  || |||||||||||  |  ||| |||||||||| ||| ||||||||| |||||||||||||    
T  14646036 ctctcaaatttgttactattatttctgtaactataccgtcttgctattcacactcccatctacttaaatcattaaagcactactcatctcactaactaca 14646135  T
Q  494 catcttttctacctaattttacta 517  Q
    | ||||||||||| ||||||||||    
T  14646136 cctcttttctacccaattttacta 14646159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 23974129 - 23974249
Alignment:
Q  109 tatgatgaatagagactccctcc-ttacctctagtttgccgaattgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 207  Q
    ||||||||||| | |||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||  |||  || ||||||||||||||| |||    
T  23974129 tatgatgaataaaaactccccccattacctctagtttgcagaattgatgatttcctacggtgaaatctttctctag-gttcttctcgctattcctctttg 23974227  T
Q  208 cctcttctctccacaaccctag 229  Q
     |||||||||||| ||||||||    
T  23974228 tctcttctctccataaccctag 23974249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 19612003 - 19611888
Alignment:
Q  114 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 212  Q
    ||||||||||||||| || |||||||| |||  |||| ||||||||| |||||| |||||||||||  ||| ||  |||||||||| |||||||||||||    
T  19612003 tgaatagagactccccccatacctctaattttgcgaaattgatgattccctacgatgaaatctctctctaggttc-ttctcgctatccctccttgcctct 19611905  T
Q  213 tctctccacaaccctag 229  Q
    |||| ||||||||||||    
T  19611904 tctccccacaaccctag 19611888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 506
Target Start/End: Original strand, 11153979 - 11154177
Alignment:
Q  296 tttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtacc 395  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||            ||||||||||| ||||||||  || ||| ||| || |||    
T  11153979 tttataagctctaattgagtttgttaccaatctttttagattagtatat------------aggtttgttaccaatcttttc-agattattatctgcacc 11154065  T
Q  396 tcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacac 494  Q
    |||| |||||| || ||||||| |  ||| |||| | ||| |||||||||||  | |||| || |||| || ||||||||||||| ||||||||||||||    
T  11154066 tctatattttgttattattctttcagtaattacaccgccttgctattcacactcccctctactaaaataattaaaacactactcaactcactaactacac 11154165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 438 - 516
Target Start/End: Complemental strand, 19611669 - 19611591
Alignment:
Q  438 tattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttact 516  Q
    |||||||||  | ||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| |||||||||||    
T  19611669 tattcacactcccctctgcttaaatcattaaagcactactcatctcactaactacacctcttttctatctaattttact 19611591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 25126318 - 25126202
Alignment:
Q  113 atgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctc 211  Q
    |||||||||||||||| || ||||||||||||  |||| |||||||||||||||| | |||| ||||  ||| ||  ||||||||||||||| |||||||    
T  25126318 atgaatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttc-ttctcgctattcctctttgcctc 25126220  T
Q  212 ttctctccacaaccctag 229  Q
    ||||| ||| ||||||||    
T  25126219 ttctcaccataaccctag 25126202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 15706694 - 15706808
Alignment:
Q  114 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 212  Q
    ||||||||||||||| | |||||||||||||  |||| ||||||||||| |||| ||||||||| |  ||||||  ||||||||||||||| ||| || |    
T  15706694 tgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctccctttagattc-ttctcgctattcctctttgtctat 15706792  T
Q  213 tctctccacaacccta 228  Q
    |||||||| |||||||    
T  15706793 tctctccataacccta 15706808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 21415092 - 21415009
Alignment:
Q  432 cctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttac 515  Q
    |||||||||||| || || || || ||||||||| ||||||||||||| |||||||||||||| |||||||| || ||||||||    
T  21415092 cctagctattcatacctccctatgtttaaatcattaaaacactactcatctcactaactacacctcttttcttcccaattttac 21415009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 15706954 - 15707035
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||||| || || |||||||||||  ||||||||||| | |||| ||||||||| ||||||||||| ||||||||||    
T  15706954 gctattcacacctccctatgcttaaatcaataaaacactacttaactcattaactacacctcttttctacccaattttacta 15707035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 19611824 - 19611749
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttt 375  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||  ||||||||||     |||||||||||||||||||||    
T  19611824 atttataagctttaattgagtttgttaccaatctttttagatttatatatgtcct-----ctaggtttgttactaatcttt 19611749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 517
Target Start/End: Original strand, 23974432 - 23974547
Alignment:
Q  402 tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatctttt 501  Q
    |||| |||||||||| |  |||||||| |  || |||||||||||  | || ||||||||| || ||||||||||||| ||||||||| |||| ||||||    
T  23974432 tttgttactattctttcagtaactacaccgtcttgctattcacactcccctatgcttaaataattaaaacactactcaactcactaaccacacctctttt 23974531  T
Q  502 ctacctaattttacta 517  Q
    ||| | ||||||||||    
T  23974532 ctaaccaattttacta 23974547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 25126135 - 25126063
Alignment:
Q  298 tataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatctttt 376  Q
    |||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||     ||||||||||||||||||    
T  25126135 tataagctctaattgagtttgttac-aatctttttagattactaaatgtcctctag-----gtttgttactaatctttt 25126063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 15706862 - 15706918
Alignment:
Q  297 ttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 353  Q
    ||||||||||||||||||||| |||| |||||||| | |||||||||||| ||||||    
T  15706862 ttataagctctaattgagtttgttacaaatcttttcacattactatatgttctctag 15706918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 11153820 - 11153890
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctc 178  Q
    |||||||||||||||||||| | |||||||||||| |  ||| ||||||| ||| ||||||||||||||||    
T  11153820 tatgatgaatagagactcccccattacctctagttcgaagaatttgatgaattcatacggtgaaatctctc 11153890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 14645763 - 14645810
Alignment:
Q  114 tgaatagagactccctccttacctctagtttgccgaattgatgatttcc 162  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  14645763 tgaatagagactccc-ccttacctctagttttccgaattgatgacttcc 14645810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 18552479 - 18552412
Alignment:
Q  44 aatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacacaaactcttcactacacgtatg 112  Q
    |||| ||||||||||| |||||||| |||| |||||||| ||||||| | |||||||||||| ||||||    
T  18552479 aattaaacatgaattcgttaaaagaacatgcaaaacaatataaaaca-acactcttcactacccgtatg 18552412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 23974315 - 23974388
Alignment:
Q  297 ttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttt 375  Q
    ||||||| | ||||||||||| ||||| ||| ||||| |||||||||| |||     ||||||||||||||||||||||    
T  23974315 ttataagttgtaattgagtttgttaccgatcgttttagattactatatttcc-----tctaggtttgttactaatcttt 23974388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 25126002 - 25125956
Alignment:
Q  471 cactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  25126002 cactactcatctcattaaatacacatcttttctacccaattttacta 25125956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 437 - 517
Target Start/End: Original strand, 21499016 - 21499096
Alignment:
Q  437 ctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  21499016 ctattcacacatctctctgcttaaatcattaaaacactacttagctccctaactacacctcttttctacctaattttacta 21499096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 295 - 517
Target Start/End: Original strand, 12786428 - 12786645
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||      ||||||||||||||||||| |||| |  ||||||| || ||    
T  12786428 atttataagctctaattgagtttgttaccaatctttttatattactatatgtc-----ttctaggtttgttactaatc-ttttcaaattactatctgcac 12786521  T
Q  395 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatct-ctctgcttaaatcatcaaaacactactcagctcactaactac 492  Q
    ||||  | |||| ||||||  ||  | ||| ||||||  || ||||||||||| ||| ||||  ||||||| | ||| ||||||||| ||||||||||||    
T  12786522 ctctcgaatttgttactatcatttatgtaattacatcgtcttgctattcacac-tctcctctagttaaatctttaaagcactactcatctcactaactac 12786620  T
Q  493 acatcttttctacctaattttacta 517  Q
    || ||||||||||| ||||||||||    
T  12786621 acctcttttctacccaattttacta 12786645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 354 - 517
Target Start/End: Original strand, 52274557 - 52274720
Alignment:
Q  354 tctaggtttgttactaatcttttttaggttactatttgtacct-ctaattttgatactattcttcctttaactacatcacctagctattcacacatctct 452  Q
    ||||||||||||||||||| ||||||| ||||||| || |||| |  |||||| ||||||| || || |||||||| ||  | | |||||||||  | ||    
T  52274557 tctaggtttgttactaatc-tttttagattactatctgcacctccgtattttgttactattatttctgtaactacaccattttgttattcacactcccct 52274655  T
Q  453 ctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    || |||||||||| ||| ||||||||| ||||| |||||||| | ||||||||| ||||||||||    
T  52274656 ctacttaaatcattaaagcactactcatctcaccaactacacctattttctacccaattttacta 52274720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 18513722 - 18513506
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    ||||||||  |||||| |||||| ||||| || |||||| ||||||||||||||||||      ||||||||||||||||||  |  ||||||| || ||    
T  18513722 atttataacttctaatcgagtttgttaccgatttttttagattactatatgtcctctaa-----gtttgttactaatcttttcaaa-ttactatctgcac 18513629  T
Q  395 ctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    ||||  | |||  || |||| || || |||||||| |  || |||||||||||  | |||| ||||| |||| ||||||||||||| |||||||| ||||    
T  18513628 ctcttgaatttattattattatttctgtaactacaccgtcttgctattcacactccactctacttaa-tcattaaaacactactcatctcactaattaca 18513530  T
Q  494 catcttttctacctaattttacta 517  Q
    | ||||||||||| ||||||||||    
T  18513529 cctcttttctacccaattttacta 18513506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 12786243 - 12786364
Alignment:
Q  109 tatgatgaatagagactccctcc-ttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctccatagatttattctcgctattcctcctt 206  Q
    |||||||||||||||||||| || ||||||||||||||  ||||| ||||| ||||||||||||||||||||   ||  || ||||  |||| || ||||    
T  12786243 tatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctcttcag-gttcttctttctatgccacctt 12786341  T
Q  207 gcctcttctctccacaaccctag 229  Q
    |||| ||||||||||||||||||    
T  12786342 gccttttctctccacaaccctag 12786364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 9131584 - 9131527
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctcta 352  Q
    ||||||||||| ||||||||||| ||||||||| ||||| |||||| |||||||||||    
T  9131584 atttataagctttaattgagtttgttaccaatcgttttagattactctatgtcctcta 9131527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 18513906 - 18513786
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttg 207  Q
    |||| |||||||||||| || |||||||| ||||||  |||| |||||||||||||| | | |||||||||  ||| ||  ||||| ||||||||| | |    
T  18513906 tatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttc-ttctcactattcctcttgg 18513808  T
Q  208 cctcttctctccacaaccctag 229  Q
    ||||||||||||| ||||||||    
T  18513807 cctcttctctccataaccctag 18513786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 517
Target Start/End: Original strand, 91928 - 91996
Alignment:
Q  449 ctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||| ||| | ||||| ||||||||||    
T  91928 ctctctacttaaatcattaaaacactactcatctcactaaatacacctctatactacccaattttacta 91996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 23632244 - 23632181
Alignment:
Q  116 aatagagactccctccttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctc 178  Q
    |||||| |||||| |||||||||||||||  |||||| ||||| ||||||||||||||||||||    
T  23632244 aatagaaactccccccttacctctagtttttcgaatttgatgagttcctacggtgaaatctctc 23632181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 517
Target Start/End: Complemental strand, 9131439 - 9131373
Alignment:
Q  451 ctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||| |||||||||| ||| |||| |||| |||||||||||||  ||||||||||| ||||||||||    
T  9131439 ctctacttaaatcattaaagcactgctcatctcactaactacatctcttttctacccaattttacta 9131373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 9131772 - 9131648
Alignment:
Q  104 acacgtatgatgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcct 202  Q
    |||| |||| |||||||||||||| |||||||||| |||||  |||| |||||||||||||||    |||||||||  ||||||  |||| |||||||||    
T  9131772 acacttatggtgaatagagactcc-tccttacctcgagttttgcgaaattgatgatttcctacaacaaaatctctctttagattc-ttcttgctattcct 9131675  T
Q  203 ccttgcctcttctctccacaaccctag 229  Q
    | || | ||||||||||| ||||||||    
T  9131674 ctttacttcttctctccataaccctag 9131648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 517
Target Start/End: Complemental strand, 12484142 - 12483983
Alignment:
Q  359 gtttgttactaatcttttttaggttactatttgtacctcta-attttgatactattcttcctttaactacatcacctagctattcacacatctctctgct 457  Q
    |||||||||||||| |||| || ||||||| || ||||||| |||||| ||||||||||  | ||||||||  | || |||||| |||| || | |  ||    
T  12484142 gtttgttactaatc-ttttcagattactatctgcacctctagattttgttactattctttttgtaactacacaatcttgctatttacacctcccccaact 12484044  T
Q  458 taaatcatcaaaacactactcagctcactaactacacatc-ttttctacctaattttacta 517  Q
    |||||||| |||||||||| ||  ||||||  ||||| || ||||||||||| ||||||||    
T  12484043 taaatcattaaaacactacacatatcactatttacacctctttttctacctagttttacta 12483983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 517
Target Start/End: Complemental strand, 23632012 - 23631896
Alignment:
Q  402 tttgatactattcttcctttaactacatcacctagctattcacacatctc-tctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 500  Q
    |||| |||||||||| || |||||||| |  || |||||||||||  ||| ||| |||||||||| ||| |||| || | |||| ||||||||| |||||    
T  23632012 tttgttactattctttctgtaactacaccgtcttgctattcacactcctcatctacttaaatcattaaagcactgctaatctcattaactacacctcttt 23631913  T
Q  501 tctacctaattttacta 517  Q
    |||| | ||||||||||    
T  23631912 tctatccaattttacta 23631896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 12484161 - 12484114
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactat 342  Q
    ||||||||||||||||||||||| |||| |||||||| | ||||||||    
T  12484161 atttataagctctaattgagtttgttactaatcttttcagattactat 12484114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 18513992 - 18513958
Alignment:
Q  43 aaatttaacatgaattcattaaaagatcatgaaaa 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  18513992 aaatttaacatgaatttattaaaagatcatgaaaa 18513958  T

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Target: scaffold0005 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 171348 - 171131
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctagtctaggtttgttactaatcttttttaggttactatttgtac 394  Q
    |||||||| |||||||||||||| |||||||| |||||| ||| |||||||| ||||||     ||||||||||||||||||  |  ||||||| || ||    
T  171348 atttataatctctaattgagtttgttaccaatttttttagatttctatatgttctctag-----gtttgttactaatcttttcaaa-ttactatatgcac 171255  T
Q  395 ctct-aattttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactaca 493  Q
    |||| || |||| ||||||| || || |||||| | |  || |||||||||||  |  ||| |||||||||| ||| ||||||||| |||||||||||||    
T  171254 ctctcaaatttgttactattatttctgtaactataccgtcttgctattcacactcccatctacttaaatcattaaagcactactcatctcactaactaca 171155  T
Q  494 catcttttctacctaattttacta 517  Q
    | ||||||||||| ||||||||||    
T  171154 cctcttttctacccaattttacta 171131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 171527 - 171480
Alignment:
Q  114 tgaatagagactccctccttacctctagtttgccgaattgatgatttcc 162  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  171527 tgaatagagactccc-ccttacctctagttttccgaattgatgacttcc 171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 354 - 513
Target Start/End: Original strand, 183149 - 183311
Alignment:
Q  354 tctaggtttgttactaatcttttttaggttactatttgtacctctaattttgatactattcttccttt----aactacatcacctagctattcacacatc 449  Q
    |||| ||||||||||||||||||  || ||||||| ||||||||||  |||| ||||| |||| ||||    |||||||     | ||||||||||||||    
T  183149 tctaagtttgttactaatcttttc-agattactatatgtacctctaggtttgttactaatctttctttttttaactacactgttttgctattcacacatc 183247  T
Q  450 tctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaatttt 513  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||| ||||||    
T  183248 tctctgcttaaatcattaaaacactactaagcttactaactacacctcttttctacccaatttt 183311  T

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Target: scaffold0019; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 182966 - 183070
Alignment:
Q  125 tccctccttacctctagtttgccgaatt-gatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctcttctctccacaa 223  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||   ||   ||  |||| |||| ||||||||||||||||||||||||    
T  182966 tccccccttacctctagtttgcagaatttgatgattttctacggtgaaatctctatcta-cgttcctctccctatgcctccttgcctcttctctccacaa 183064  T
Q  224 ccctag 229  Q
    ||||||    
T  183065 ccctag 183070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 1859 - 1921
Alignment:
Q  116 aatagagactccctccttacctctagtttgccgaattgatgatttcctacggtgaaatctctc 178  Q
    ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  1859 aatagagactccccccatacctctagtttgcagaattgatgatttcctacggtgaaatctctc 1921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 402 - 517
Target Start/End: Original strand, 2113 - 2228
Alignment:
Q  402 tttgatactattcttcctttaactacatcacctagctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatctttt 501  Q
    |||| |||||||||| | ||||||||| |  || |  ||||||||  | |||||||||||| || ||||||||||||| |||||||||||||| ||||||    
T  2113 tttgttactattctttcattaactacaccgtcttgaaattcacactcccctctgcttaaataattaaaacactactcacctcactaactacacctctttt 2212  T
Q  502 ctacctaattttacta 517  Q
    ||||| ||||||||||    
T  2213 ctacccaattttacta 2228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 1994 - 2051
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctcta 352  Q
    ||||||||| | ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  1994 atttataagttataattgagtttgttaccaatctttttagattactatatttcctcta 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 35571 - 35456
Alignment:
Q  114 tgaatagagactccctccttacctctagtttgccgaa-ttgatgatttcctacggtgaaatctctccatagatttattctcgctattcctccttgcctct 212  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||  ||   ||  ||| ||||| ||| ||||||| |    
T  35571 tgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctcta-cgttcctcttgctatgccttcttgccttt 35473  T
Q  213 tctctccacaaccctag 229  Q
    |||||||||||||||||    
T  35472 tctctccacaaccctag 35456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 517
Target Start/End: Complemental strand, 35330 - 35214
Alignment:
Q  402 tttgatactattcttcctttaactacatcacctagctattcacacatctc-tctgcttaaatcatcaaaacactactcagctcactaactacacatcttt 500  Q
    |||| |||||||||| || |||| ||| |  || ||||||||||| || | ||| ||||| |||| ||| || |||||| ||||||||||||||||||||    
T  35330 tttgttactattctttctgtaaccacaccgtcttgctattcacacttcccatctacttaactcattaaagcattactcatctcactaactacacatcttt 35231  T
Q  501 tctacctaattttacta 517  Q
    |||||| || |||||||    
T  35230 tctacccaaatttacta 35214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 48262 - 48321
Alignment:
Q  109 tatgatgaatagagactccctccttacctctagtttgccgaattgatgatttcctacggt 168  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  48262 tatggtgaatagagactccccccttacctctagttttccgaattgatgaattcctacggt 48321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 3089 - 3170
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    ||||||| ||| || ||||||||||||||  ||| ||||||||| |||||||||||||| ||||||| ||| ||||||||||    
T  3089 gctattcgcacctccctctgcttaaatcaataaagcactactcaactcactaactacacctcttttcaacccaattttacta 3170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 2995 - 3053
Alignment:
Q  295 atttataagctctaattgagtttattaccaatctttttaaattactatatgtcctctag 353  Q
    ||||||||||||||||||||||| |||| | |||||| | |||||||||||| ||||||    
T  2995 atttataagctctaattgagtttgttacaactcttttcagattactatatgttctctag 3053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 16589 - 16670
Alignment:
Q  436 gctattcacacatctctctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||||||||||  | || ||||||||| |  ||||||||||||| |||||||||||||| |||||| |||| ||||||||||    
T  16589 gctattcacactcccctttgcttaaataagtaaaacactactcaactcactaactacacctcttttatacccaattttacta 16670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 517
Target Start/End: Complemental strand, 7247 - 7183
Alignment:
Q  452 tctgcttaaatcatcaaaacactactcagctcactaactacacatcttttctacctaattttacta 517  Q
    |||||||||||||| |||||| ||||| | |||| |||||||| ||||| ||||| ||||||||||    
T  7247 tctgcttaaatcattaaaacattactccgttcacaaactacacctctttcctacc-aattttacta 7183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 1279 - 1311
Alignment:
Q  50 acatgaattcattaaaagatcatgaaaaacaat 82  Q
    |||| ||||||||||||||||||||||||||||    
T  1279 acattaattcattaaaagatcatgaaaaacaat 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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