View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_high_17 (Length: 479)

Name: NF11571_high_17
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_high_17
NF11571_high_17
[»] chr1 (15 HSPs)
chr1 (1-461)||(7740816-7741270)
chr1 (27-219)||(15581519-15581704)
chr1 (15-219)||(42365839-42366032)
chr1 (5-192)||(41404048-41404228)
chr1 (3-127)||(48046435-48046560)
chr1 (82-217)||(50678182-50678314)
chr1 (1-217)||(34969739-34969938)
chr1 (50-154)||(16302721-16302826)
chr1 (82-154)||(42934226-42934301)
chr1 (182-219)||(48046405-48046442)
chr1 (82-154)||(19551225-19551297)
chr1 (234-298)||(46205370-46205434)
chr1 (82-154)||(49764907-49764979)
chr1 (80-154)||(23473769-23473843)
chr1 (4-68)||(39793674-39793738)
[»] chr3 (20 HSPs)
chr3 (15-219)||(27011134-27011331)
chr3 (3-219)||(39439827-39440041)
chr3 (27-219)||(42029276-42029466)
chr3 (16-219)||(25045315-25045521)
chr3 (35-146)||(2230102-2230209)
chr3 (168-219)||(32278316-32278367)
chr3 (119-216)||(44713184-44713273)
chr3 (27-154)||(25909352-25909480)
chr3 (86-154)||(40026083-40026151)
chr3 (182-219)||(2230242-2230279)
chr3 (35-154)||(14567854-14567974)
chr3 (82-154)||(29765266-29765337)
chr3 (234-298)||(52286126-52286190)
chr3 (394-461)||(1758407-1758473)
chr3 (179-218)||(23407925-23407964)
chr3 (5-150)||(23420240-23420389)
chr3 (362-468)||(14623757-14623863)
chr3 (32-150)||(23466708-23466829)
chr3 (384-461)||(25395274-25395350)
chr3 (182-218)||(23466643-23466679)
[»] chr7 (11 HSPs)
chr7 (5-219)||(36657571-36657779)
chr7 (15-219)||(23417195-23417387)
chr7 (16-217)||(19625367-19625566)
chr7 (5-154)||(261718-261867)
chr7 (71-154)||(5925167-5925250)
chr7 (380-458)||(41423768-41423846)
chr7 (5-154)||(12633429-12633587)
chr7 (234-298)||(25029729-25029793)
chr7 (115-154)||(29428919-29428958)
chr7 (367-447)||(16374747-16374827)
chr7 (377-461)||(18207262-18207346)
[»] chr5 (11 HSPs)
chr5 (3-219)||(11617182-11617396)
chr5 (27-219)||(4943475-4943665)
chr5 (50-154)||(7505998-7506103)
chr5 (12-154)||(9159446-9159589)
chr5 (16-154)||(30084910-30085049)
chr5 (15-128)||(29293199-29293312)
chr5 (10-154)||(5247867-5248005)
chr5 (185-219)||(30084858-30084892)
chr5 (362-448)||(31009084-31009170)
chr5 (182-219)||(41483507-41483544)
chr5 (380-448)||(33149574-33149642)
[»] scaffold0022 (2 HSPs)
scaffold0022 (4-219)||(44087-44300)
scaffold0022 (4-219)||(77808-78021)
[»] chr4 (16 HSPs)
chr4 (3-216)||(35292001-35292207)
chr4 (5-213)||(50859126-50859327)
chr4 (65-218)||(3121182-3121328)
chr4 (27-154)||(22405046-22405174)
chr4 (21-148)||(31227714-31227841)
chr4 (4-154)||(46944056-46944207)
chr4 (87-219)||(41223714-41223838)
chr4 (16-219)||(35033797-35033998)
chr4 (48-216)||(48084633-48084799)
chr4 (223-345)||(18895213-18895337)
chr4 (82-154)||(21263630-21263702)
chr4 (82-154)||(4292687-4292759)
chr4 (168-211)||(13779289-13779332)
chr4 (116-154)||(4342109-4342147)
chr4 (5-154)||(41809861-41810016)
chr4 (384-461)||(47104627-47104704)
[»] chr2 (11 HSPs)
chr2 (3-219)||(10354208-10354417)
chr2 (27-154)||(28219028-28219156)
chr2 (82-219)||(7444724-7444858)
chr2 (5-150)||(1499191-1499338)
chr2 (21-153)||(44246347-44246475)
chr2 (16-218)||(28199194-28199393)
chr2 (5-123)||(17999917-18000035)
chr2 (182-219)||(6476769-6476806)
chr2 (182-217)||(18000080-18000115)
chr2 (182-217)||(44246301-44246336)
chr2 (400-461)||(17819960-17820021)
[»] chr8 (8 HSPs)
chr8 (1-219)||(38679689-38679904)
chr8 (82-219)||(42025397-42025526)
chr8 (87-218)||(34924794-34924922)
chr8 (82-219)||(14112385-14112520)
chr8 (76-150)||(30800196-30800270)
chr8 (82-150)||(28873761-28873829)
chr8 (362-448)||(42354506-42354592)
chr8 (380-448)||(34012232-34012300)
[»] scaffold0127 (1 HSPs)
scaffold0127 (5-192)||(30107-30287)
[»] scaffold0110 (1 HSPs)
scaffold0110 (15-219)||(38552-38739)
[»] scaffold0039 (2 HSPs)
scaffold0039 (82-152)||(56928-56998)
scaffold0039 (182-219)||(56864-56901)
[»] scaffold0224 (1 HSPs)
scaffold0224 (82-154)||(12470-12545)
[»] scaffold0227 (1 HSPs)
scaffold0227 (82-154)||(238-310)
[»] chr6 (3 HSPs)
chr6 (362-468)||(31952948-31953054)
chr6 (255-301)||(33870203-33870249)
chr6 (429-462)||(9379697-9379730)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 7741270 - 7740816
Alignment:
Q  1 aaagttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggttaa-tggatgg-tattggaaggaatg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||||||||||    
T  7741270 aaagttgtgattgtattatcaatgttttccatttcattggattcacttcaaattggatgaaatgaaaatttggttaaatggatgggtattggaaggaatg 7741171  T
Q  99 ggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||        ||||||| ||||||||||||||||||||||||||||    
T  7741170 ggttccatcacactctattccattccatttattttttacaaaactaaacaatggaa--------catggttacatcccactctattccattccaccactc 7741079  T
Q  199 tccatcaatccaaacatagccgaagaggtgcactctggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 298  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7741078 tccatcaatccaaacatagccgaagaggtgcactctagctattttttaattccttttcaatttctaattgtcgccactttttcaccatattctcaaatgc 7740979  T
Q  299 cacaaaattgtgtgaggcatgttgtattttctgcaatctctcccaaaacaccaatattggtagggaagatgtcacatggataccctttattctcgtacat 398  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7740978 cacaaaattgtgtgaggcatgttgtattttgtgcaatctctcccaaaacaccaatattagtagggaagatgtcacatggataccctttattctcgtacat 7740879  T
Q  399 ctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    |||||||||  |||||||||| |||| |||||||| |||||||| ||||||||| ||||||||    
T  7740878 ctttgtacatcccatgcaacaggaagagagaagaggagatgaaaaagaaaatatatttgtgtg 7740816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 15581704 - 15581519
Alignment:
Q  27 ttccatttcattggattcactccaaattgggtggaatg-aaaatttggttaatggatggtattggaaggaatgggttccatcacactctattccattcca 125  Q
    ||||||| |||||||| ||| |||||||||| |||||| |||||| ||  |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15581704 ttccattccattggatacaccccaaattggggggaatggaaaattgggagaatggatggtattggatggaatgggttccatcacactccattccattcca 15581605  T
Q  126 tttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 219  Q
    ||| ||||||||||||||||||||||||   |||     ||| |  ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15581604 tttcttttttacaaaaccaaacaatgga---atg-----tggatatatcccactccattccattccatcactctccatcaatccaaacatagcc 15581519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 42366032 - 42365839
Alignment:
Q  15 attatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactc 113  Q
    ||||| ||||| ||||||| |||||||| ||| ||||||| | ||||||||||| ||||   |||| ||||||||||| |||||||||||||||||||||    
T  42366032 attattaatgtgttccattccattggatacaccccaaattagatggaatgaaaaattggaagaatgaatggtattggatggaatgggttccatcacactc 42365933  T
Q  114 tattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaac 213  Q
     ||||||||||||| |||||||| ||||||||       ||  |||||||||||||||||     || ||||||||||| ||||||||||||||||||||    
T  42365932 cattccattccattcattttttataaaaccaa-------aacaatggaacatggttccat-----tccattccattccatcactctccatcaatccaaac 42365845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 41404228 - 41404048
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttc 103  Q
    |||| ||||| |||| ||||| |||||||||||||||| ||| |||||||||| |||||| ||| |||| | ||||  ||||||  || |||||||||||    
T  41404228 ttgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttc 41404129  T
Q  104 catcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattcca 192  Q
    ||||||| || |||||||||||||  |||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||    
T  41404128 catcacattccattccattccattatttttttacaaaaccaaacaat--------ggaacatggctccatcccactccattccattcca 41404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 48046560 - 48046435
Alignment:
Q  3 agttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgggt 101  Q
    |||||| ||||||||||  |||| ||||||| |||||||| ||| ||||||| || ||||||||||||||| ||||||| |||||||||| |||||| ||    
T  48046560 agttgtcattgtattatttatgtattccattccattggatacaccccaaattagggggaatgaaaatttggcttaatgggtggtattggatggaatgagt 48046461  T
Q  102 tccatcacactctattccattccatt 127  Q
    |||||||||||| |||||||||||||    
T  48046460 tccatcacactccattccattccatt 48046435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 50678182 - 50678314
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactc- 180  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||  |||||||||||||||||||        ||||||||||||||||||||||||     
T  50678182 tggtattggatagaatgggttccatcacactccattccattccattccttttttacaaaaccaaaca--------atggaacatggttccatcccactca 50678273  T
Q  181 ----tattccattccaccactctccatcaatccaaacatag 217  Q
         ||||||||||| ||||||||||||||||||||||||    
T  50678274 atttcattccattccatcactctccatcaatccaaacatag 50678314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 34969938 - 34969739
Alignment:
Q  1 aaagttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgg 99  Q
    ||||||||  ||||||||| ||||| ||| ||| |||| ||| ||| |||||||||  ||||||||||||||  ||||||  |||||||||| |||||||    
T  34969938 aaagttgtctttgtattattaatgtattctattccatttgatacaccccaaattgga-ggaatgaaaatttgacttaatgagtggtattggatggaatgg 34969840  T
Q  100 gttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactct 199  Q
    ||||||||||||     | ||||||||| ||||||||||||| |||||||||||       ||||||||| ||||||||     ||||||||| ||||||    
T  34969839 gttccatcacac-----ttcattccattcattttttacaaaatcaaacaatgga-------aacatggtttcatcccac-----tccattccatcactct 34969757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 16302721 - 16302826
Alignment:
Q  50 aaattgggtggaatgaaaat-ttggttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaaca 148  Q
    |||||||| ||||||||||  ||| | ||||||||  |||||| |||||| |||||||||||||| |||||||||||||  |||||||||||||||||||    
T  16302721 aaattggggggaatgaaaaaattgataaatggatgacattggatggaatgagttccatcacactccattccattccattccttttttacaaaaccaaaca 16302820  T
Q  149 atggaa 154  Q
    ||||||    
T  16302821 atggaa 16302826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 42934301 - 42934226
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattcc---atttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| ||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||||||    
T  42934301 tggtattggatggaatgggttccatcacactccattccattccattattttttttttacaaaaccaaacaatggaa 42934226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 48046442 - 48046405
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatagcc 219  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48046442 attccattccaccactctccatcaatccaaacatagcc 48046405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 19551225 - 19551297
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| |||||| |||||||||   |||||| |||||||||  |||||||||||||||||| ||||||    
T  19551225 tggtattggatggaatgagttccatcatgttctatttcattccattacttttttacaaaaccaaacgatggaa 19551297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 46205434 - 46205370
Alignment:
Q  234 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 298  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  46205434 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 46205370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 49764979 - 49764907
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| | |||| ||||||||| |||| ||||||| | ||| ||||||| ||||| ||||||||||||    
T  49764979 tggtattggatgaaatgagttccatcatactccattccatcctattcattttttgcaaaatcaaacaatggaa 49764907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 23473843 - 23473769
Alignment:
Q  80 gatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||| ||| ||||||| ||||||||   || ||||||||||||| | |||||||| | |||||||||||||    
T  23473843 gatggtatgggatggaatggattccatcatgttccattccattccattcaatttttacacatccaaacaatggaa 23473769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 39793738 - 39793674
Alignment:
Q  4 gttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaa 68  Q
    ||||| |||||||||| ||||| |||||||||||||||| ||| | ||||| |  ||||||||||    
T  39793738 gttgtaattgtattattaatgtgttccatttcattggatacaccctaaattagaaggaatgaaaa 39793674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 27011331 - 27011134
Alignment:
Q  15 attatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactc 113  Q
    ||||| ||||| || |||| |||||||| ||| ||||||||| ||||||||||| ||||   ||||  |||||||||| |||||||||||||||||||||    
T  27011331 attattaatgtgtttcattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 27011232  T
Q  114 tattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaac 213  Q
     |||||||||||||  |||||||||||||||||||||        |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  27011231 cattccattccattccttttttacaaaaccaaacaat--------ggaacatggttccatcccactccattccattccatcactctccatcaatccaaac 27011140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 39439827 - 39440041
Alignment:
Q  3 agttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggt 101  Q
    |||||| ||| ||||||  |||| ||||||| |||||||| ||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||| ||    
T  39439827 agttgtcattatattatttatgtattccattccattggatacaccccaaattggggggaatgaaaatttggtttaatgggtggtattggatggaatgagt 39439926  T
Q  102 tccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcc 201  Q
    |||||||||||| |||||||||||||  |||||| |||||||||||||||||| |||||    |  | |||  ||| || ||||||||||||||||||||    
T  39439927 tccatcacactccattccattccattctttttttgcaaaaccaaacaatggaa-tatgg--ttttatcccactccattccattccattccaccactctcc 39440023  T
Q  202 atcaatccaaacatagcc 219  Q
    ||||||||||||||||||    
T  39440024 atcaatccaaacatagcc 39440041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 42029276 - 42029466
Alignment:
Q  27 ttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattcca 125  Q
    ||||||| |||||||| ||| ||||||||||||||||||||| |||    ||||  |||||||||| |||||||||||||||| |||| |||||||||||    
T  42029276 ttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccatcatactccattccattcca 42029375  T
Q  126 tttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattc-----cattccaccactctccatcaatccaaacatagcc 219  Q
    |   |||||||||||||||||||||||||   ||     ||| |||||||||||| ||||     ||||||||||||| ||| ||||||||||||||||    
T  42029376 tcccttttttacaaaaccaaacaatggaa---tg-----tggctccatcccactccattccattccattccaccactcaccaccaatccaaacatagcc 42029466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 25045521 - 25045315
Alignment:
Q  16 ttatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactct 114  Q
    |||| ||||| ||||||| |||||||| ||| |||| ||||| |||||| ||| |||| | ||||  |||||||||| |||||| ||||||||||| ||     
T  25045521 ttattaatgtgttccattccattggatacacaccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttccatcacattcc 25045422  T
Q  115 attccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcc-----cactctattccattccaccactctccatcaatcc 209  Q
    |||||||||||||    |||| |||||||||||||||||   ||  |||    ||||||||     || || ||||||||||||||||||||||||||||    
T  25045421 attccattccattacaattttgcaaaaccaaacaatgga---atctaactctattccatcccatttcattccattccattccaccactctccatcaatcc 25045325  T
Q  210 aaacatagcc 219  Q
    ||||||||||    
T  25045324 aaacatagcc 25045315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 2230102 - 2230209
Alignment:
Q  35 cattggattcactccaaattgggtggaatgaaaatttg-gttaatggatggtattggaaggaatgggttccatcacactctattccattccatttatttt 133  Q
    |||||||| |||||||||||| |  ||||||||| ||| || |||||||||||||||| | |||||||||||||||     |||||||| |||| |||||    
T  2230102 cattggatacactccaaattgaggagaatgaaaaattgagtgaatggatggtattggatgcaatgggttccatcac-----attccatttcattcatttt 2230196  T
Q  134 ttacaaaaccaaa 146  Q
    |||||||||||||    
T  2230197 ttacaaaaccaaa 2230209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 32278367 - 32278316
Alignment:
Q  168 ttccatcccactctattccattccaccactctccatcaatccaaacatagcc 219  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  32278367 ttccatcccattccattccattccaccactctccatcaatccaaacatagcc 32278316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 44713273 - 44713184
Alignment:
Q  119 cattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacata 216  Q
    ||||||||| |||||||||||||| |||||||||||   ||     ||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  44713273 cattccattaattttttacaaaactaaacaatggaa---tg-----tggctccatccctctccattccattccaccactctccatcaatccaaacata 44713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 25909480 - 25909352
Alignment:
Q  27 ttccatttcattggattcactccaaattgggtggaatgaaaatttggt-taatggatggtattggaaggaatgggttccatcacactctattccattcca 125  Q
    ||||||||||||| || ||| ||||||||||  ||||||||| ||||  || ||| |||||||||| |||||| ||||||| | | |  ||| |||||||    
T  25909480 ttccatttcattgcatacaccccaaattggggagaatgaaaaattggaatagtgggtggtattggatggaatgagttccattatatttcatttcattcca 25909381  T
Q  126 tttattttttacaaaaccaaacaatggaa 154  Q
    || | || |||||||||||||||||||||    
T  25909380 ttcacttattacaaaaccaaacaatggaa 25909352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 40026083 - 40026151
Alignment:
Q  86 attggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||| ||||| |||||| ||||| || ||||||||| ||| ||||||||||||| ||||||||||||    
T  40026083 attggatggaataggttccttcacattccattccattctattcattttttacaaaatcaaacaatggaa 40026151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 2230242 - 2230279
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatagcc 219  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2230242 attccattccaccactctccatcaatccaagcatagcc 2230279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 14567974 - 14567854
Alignment:
Q  35 cattggattcactccaaattgggtggaatgaaaatttg---gttaatggatggtattggaaggaatgggttccatcacactctattccattccatttatt 131  Q
    |||||||| ||| |||||||||| |||||||||| |||   |||  |||||||||||||| |||||| |||||||   | || |||||| |||||| | |    
T  14567974 cattggatacaccccaaattggggggaatgaaaaattgaaggtt--tggatggtattggatggaatgagttccattgtattccattccactccattcact 14567877  T
Q  132 ttttacaaaaccaaacaatggaa 154  Q
    |||| |||| |||||||||||||    
T  14567876 ttttgcaaatccaaacaatggaa 14567854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 29765266 - 29765337
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| ||||| | ||||||||  ||| ||||||||||| |||| ||||||||| |||||||||||||    
T  29765266 tggtattggatggaattgattccatcatgctccattccattcca-ttatgttttacaaagccaaacaatggaa 29765337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 52286126 - 52286190
Alignment:
Q  234 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 298  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  52286126 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 52286190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 461
Target Start/End: Original strand, 1758407 - 1758473
Alignment:
Q  394 tacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    |||| |||||||||| |||||||  | |||| |||||||| |||||||||||||||| ||||||||||    
T  1758407 tacacctttgtacac-ccatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtg 1758473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 23407964 - 23407925
Alignment:
Q  179 tctattccattccaccactctccatcaatccaaacatagc 218  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  23407964 tctattccattccaccactctctaccaatccaaacatagc 23407925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 23420389 - 23420240
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaat--gaaaatttggttaatggatggtattggaaggaatgggtt 102  Q
    |||| ||||| |||| ||||| || |||||||||| || ||| ||| | |||| |||||  ||||||| | | ||| | |||||||||| | |||| |||    
T  23420389 ttgtaattgtgttattaatgtgtttcatttcattgcatacaccccacaatgggaggaattggaaaattggttaaataggtggtattggatgtaatgagtt 23420290  T
Q  103 ccatcacactctattccattccatt--tattttttacaaaaccaaacaat 150  Q
    |||| |||||| | ||||||| |||  | |||||||||||||||||||||    
T  23420289 ccattacactccactccattctattccttttttttacaaaaccaaacaat 23420240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 14623757 - 14623863
Alignment:
Q  362 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    |||| |||| |||| || ||| ||||||||| |||||| || |||||  ||||||  |  ||| ||||||||||||||||||||||| | || |||||||    
T  14623757 ggaaaatgttacatagacaccatttattctcatacatccttctacacctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtgtg 14623856  T
Q  462 atgtcca 468  Q
    | |||||    
T  14623857 aggtcca 14623863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 23466829 - 23466708
Alignment:
Q  32 tttcattggattcactccaaattgggtggaa-tgaaaatttggttaa-tggatggtattggaaggaatgggttccatcacactctattccattccattta 129  Q
    |||||||| || ||| |||||||||| |||| || ||| |||||||| | | |||||||||| | |||| ||||||| |||||  ||||||||| |||      
T  23466829 tttcattgcatacaccccaaattgggaggaactggaaaattggttaaataggtggtattggatgcaatgagttccattacactacattccattctattcc 23466730  T
Q  130 tttttt-acaaaaccaaacaat 150  Q
    |||||| |||||||||||||||    
T  23466729 tttttttacaaaaccaaacaat 23466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 25395274 - 25395350
Alignment:
Q  384 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    ||||| ||| ||||||||||||||| ||||| |  |  ||| || |||||||||||||||||||||| ||||||||||    
T  25395274 tttatcctcatacatctttgtacac-ccatgtactagaaagagaaaagagaagatgaaagagaaaatgtgtttgtgtg 25395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 23466679 - 23466643
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatagc 218  Q
    ||||||||||||||||||| | |||||||||||||||    
T  23466679 attccattccaccactctctaccaatccaaacatagc 23466643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 36657571 - 36657779
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttc 103  Q
    |||||||||||||| |||| ||||| ||| |||||||| ||| |||||||||||||| ||||||| ||||| |||| ||||||||||| |||||||||||    
T  36657571 ttgtgattgtattaacaatattttcgattccattggatacaccccaaattgggtggattgaaaatctggttaaatgaatggtattggatggaatgggttc 36657670  T
Q  104 catcacactctattccattcca-tttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 202  Q
    |||||||||   || ||||||| ||| |||||||||||||||||||        |||||||||||||||||||||| | ||||||||||| |||||||||    
T  36657671 catcacacttcttttcattccatttttttttttacaaaaccaaaca--------atggaacatggttccatcccaccccattccattccatcactctcca 36657762  T
Q  203 tcaatccaaacatagcc 219  Q
    |||||||||| ||||||    
T  36657763 tcaatccaaatatagcc 36657779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 23417195 - 23417387
Alignment:
Q  15 attatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactc 113  Q
    ||||| ||||| ||||||| |||||||| ||| ||||||||| ||||||||||| ||||   ||||  |||||||||| |||||||||||||||| ||||    
T  23417195 attattaatgtgttccattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcatactc 23417294  T
Q  114 tattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaac 213  Q
     || ||||||||||  |||||||||||||||||||        ||||||||||||||||||||||     ||||||||| ||||||||||||||||||||    
T  23417295 catgccattccattccttttttacaaaaccaaaca--------atggaacatggttccatcccac-----tccattccatcactctccatcaatccaaac 23417381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 19625566 - 19625367
Alignment:
Q  16 ttatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactct 114  Q
    |||| ||||| ||||||  |||||||| |||  ||| ||||| |||||| ||| |||| | ||||  |||||||||| |||||  ||||||||||| ||     
T  19625566 ttattaatgtgttccatcccattggatacaccacaatttgggaggaatggaaaattggatgaatgagtggtattggatggaattagttccatcacattcc 19625467  T
Q  115 attccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaaca 214  Q
    |||||||||||||   ||||| ||||||||||||||| || | ||  ||    |||||||||| || |||||||||||||||||||||||||||||||||    
T  19625466 attccattccattacatttttgcaaaaccaaacaatgaaa-tctg--actctattccatcccattccattccattccaccactctccatcaatccaaaca 19625370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 261718 - 261867
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaat-gaaaatttggttaatggatggtattggaaggaatgggttc 103  Q
    |||| ||||| |||| ||||| |||||||||||||||| ||| |||||||| | ||||| |||||||  || ||||  | ||||| || ||||||| |||    
T  261718 ttgtaattgtgttattaatgtgttccatttcattggatacaccccaaattgaggggaatggaaaattgagtaaatgagttgtatttgatggaatggattc 261817  T
Q  104 catcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||  | |||||||||||| | |||||||||||| ||||||||||||    
T  261818 catcacatcccattccattccatct-ttttttacaaaatcaaacaatggaa 261867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 5925167 - 5925250
Alignment:
Q  71 tggttaatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||| |||| ||| ||||||| ||||||| |||||||| | |||||||||| |||| || ||||||||||||||||||||||||    
T  5925167 tggtgaatgaatgatattggatggaatggattccatcatattctattccataccatatactttttacaaaaccaaacaatggaa 5925250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 41423846 - 41423768
Alignment:
Q  380 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgt 458  Q
    ||||||||||||| |||| |||||||||| |||||||  | |||| |||||||| ||||||||||||||||||| ||||    
T  41423846 accctttattctcatacacctttgtacaccccatgcactaggaagagagaagaggagatgaaagagaaaatatgcttgt 41423768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 12633587 - 12633429
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggttaatgga-tggtattgg---aaggaatggg 100  Q
    |||| |||||||||| ||||| || |||| |||||||| ||| | || ||||| |||||| ||| |||| |||  || |||||||||   | |||||| |    
T  12633587 ttgtaattgtattattaatgtatttcattccattggatacaccctaatttgggaggaatggaaaattggctaaatgagtggtattggtcgatggaatgag 12633488  T
Q  101 ttccatcacactctattccattccat----ttattt-tttacaaaaccaaacaatggaa 154  Q
    ||||||||||||| | ||||||||||    |||||| ||||||||||||||||||||||    
T  12633487 ttccatcacactccactccattccattccattatttgtttacaaaaccaaacaatggaa 12633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 25029729 - 25029793
Alignment:
Q  234 tggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgc 298  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||||| || ||||||||    
T  25029729 tggctatttttgaattccttttcagtctctaattgtcgccacttgtttaccattttttcaaatgc 25029793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 29428958 - 29428919
Alignment:
Q  115 attccattccatttattttttacaaaaccaaacaatggaa 154  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  29428958 attccattccattcattttttacaaatccaaacaatggaa 29428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 447
Target Start/End: Original strand, 16374747 - 16374827
Alignment:
Q  367 atgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaa 447  Q
    |||| |||| || ||||||||||||| |||| ||||||||||||||| ||  | |||| ||||| |  |||||||||||||    
T  16374747 atgttacatagacaccctttattctcatacacctttgtacactccatacattaggaagagagaaaaagagatgaaagagaa 16374827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 18207346 - 18207262
Alignment:
Q  377 gataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    ||||||||||||| || |||| | |||||||||| || ||  | |||| |||||||| |||||||||||||| | || |||||||    
T  18207346 gataccctttattatcatacacccttgtacactctatccactaggaagagagaagaggagatgaaagagaaagtgtgcttgtgtg 18207262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 11617396 - 11617182
Alignment:
Q  3 agttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgggt 101  Q
    |||||| ||||||||||  |||| ||||||| |||||||| ||| | || ||||| ||||||||||||||| ||||||| |||||||||| |||||| ||    
T  11617396 agttgtcattgtattatttatgtattccattccattggatacacactaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagt 11617297  T
Q  102 tccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcc 201  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||    |  | |||  ||| || ||||||||||||||||||||    
T  11617296 tccatcacactccattccattccattcattttttgcaaaaccaaacaatggaa-tatgg--ttttatcccactccattccattccattccaccactctcc 11617200  T
Q  202 atcaatccaaacatagcc 219  Q
    ||||||||||||||||||    
T  11617199 atcaatccaaacatagcc 11617182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 4943665 - 4943475
Alignment:
Q  27 ttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattcca 125  Q
    ||||||| |||||||  ||| ||||||||||||||||| ||| |||    ||||  |||||||||| ||||||||||||||||||||| |||||||||||    
T  4943665 ttccattccattggaaacaccccaaattgggtggaatggaaaattgaaggaatgagtggtattggatggaatgggttccatcacactccattccattcca 4943566  T
Q  126 tttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacatagcc 219  Q
    |   ||||||||||||||||||||||||| |||||  |    | |||  ||| |||||||||||||||||||| ||| ||||||||||||||||    
T  4943565 tcccttttttacaaaaccaaacaatggaa-tatgg--ctccatcccactccattctattccattccaccactcaccaccaatccaaacatagcc 4943475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 7505998 - 7506103
Alignment:
Q  50 aaattgggtggaatgaaaatttggttaatgga-tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaaca 148  Q
    |||||||| |||||| ||| ||||||||  || |||||||||| ||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  7505998 aaattggggggaatggaaaattggttaaatgagtggtattggatggaattgattccatcacactctatttcattccattaattttttacaaaaccaaaca 7506097  T
Q  149 atggaa 154  Q
    ||||||    
T  7506098 atggaa 7506103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 9159589 - 9159446
Alignment:
Q  12 tgtattatcaatgttttccatttcattggattcactcc--aaattgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggttccatca 108  Q
    |||||||||||||| |||||||  ||||||| ||| ||  ||||| || |||||| ||  |||| ||| ||| |||||||||| ||||||||||||||||    
T  9159589 tgtattatcaatgtgttccattctattggatgcacacctcaaattagggggaatggaagattggataaatgggtggtattggatggaatgggttccatca 9159490  T
Q  109 cactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    || || ||||| |||||||  |||||||||||||||||||||||||    
T  9159489 cattccattcctttccatt--ttttttacaaaaccaaacaatggaa 9159446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 30085049 - 30084910
Alignment:
Q  16 ttatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactct 114  Q
    |||| ||||| ||||||| |||||||| ||| |||| ||||| |||||| ||| |||| | ||||  |||||||||| |||||| ||||||||||| ||     
T  30085049 ttattaatgtgttccattccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttccatcacattcc 30084950  T
Q  115 attccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||||||    |||| ||||||||||||||||||    
T  30084949 attccattccattacaattttgcaaaaccaaacaatggaa 30084910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 29293312 - 29293199
Alignment:
Q  15 attatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactc 113  Q
    ||||| ||||| ||||||| || ||||| | | |||||||||| |||||||||||||| || |||| |||| |||||| ||| ||||||||||| |||||    
T  29293312 attattaatgtattccattccactggataccc-ccaaattggggggaatgaaaatttgatttaatgaatggcattggatggagtgggttccatcccactc 29293214  T
Q  114 tattccattccattt 128  Q
      |||||||||||||    
T  29293213 cgttccattccattt 29293199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 5247867 - 5248005
Alignment:
Q  10 attgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatca 108  Q
    |||||||||| ||||| |||||||  ||||| | |||   ||||||| ||||||| ||| |||||| ||||  ||||||||||  |||||||||||||||    
T  5247867 attgtattattaatgtgttccattctattgggtacaccttaaattggatggaatggaaaattggttgaatgagtggtattggattgaatgggttccatca 5247966  T
Q  109 cactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |     ||||||||   ||| |||||||||||||||||||||||||    
T  5247967 c-----attccatt--tttttttttttacaaaaccaaacaatggaa 5248005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 30084892 - 30084858
Alignment:
Q  185 ccattccaccactctccatcaatccaaacatagcc 219  Q
    |||||||||||||||||||||||||||||||||||    
T  30084892 ccattccaccactctccatcaatccaaacatagcc 30084858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 448
Target Start/End: Complemental strand, 31009170 - 31009084
Alignment:
Q  362 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaa 448  Q
    |||| |||| |||| || ||||||||||||| |||| |||||||||| |||||||  | |||| |||||||||||| |||| |||||    
T  31009170 ggaaaatgttacatagacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagagaagaggaaatagaaa 31009084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 41483544 - 41483507
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatagcc 219  Q
    |||||||||||||||  |||||||||||||||||||||    
T  41483544 attccattccaccacattccatcaatccaaacatagcc 41483507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 448
Target Start/End: Original strand, 33149574 - 33149642
Alignment:
Q  380 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaa 448  Q
    |||||||||||||||||| | |||||||| |||||||  | |||| |||||||| |||  |||||||||    
T  33149574 accctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaa 33149642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 44087 - 44300
Alignment:
Q  4 gttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggtt 102  Q
    ||||| ||||| |||| ||||| || |||| ||||||   |||  ||||||||| |||||| ||| |||||||| ||| |||||||||| ||||||||||    
T  44087 gttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 44186  T
Q  103 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 202  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |    | |||  ||| || |||||||||||||||||||||    
T  44187 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaa-tatggatc--tatcccactccattccattccattccaccactctcca 44283  T
Q  203 tcaatccaaacatagcc 219  Q
    |||||||||||||||||    
T  44284 tcaatccaaacatagcc 44300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 77808 - 78021
Alignment:
Q  4 gttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggtt 102  Q
    ||||| ||||| |||| ||||| || |||| ||||||   |||  ||||||||| |||||| ||| |||||||| ||| |||||||||| ||||||||||    
T  77808 gttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 77907  T
Q  103 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcca 202  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |    | |||  ||| || |||||||||||||||||||||    
T  77908 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaa-tatggatc--tatcccactccattccattccattccaccactctcca 78004  T
Q  203 tcaatccaaacatagcc 219  Q
    |||||||||||||||||    
T  78005 tcaatccaaacatagcc 78021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 35292207 - 35292001
Alignment:
Q  3 agttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgggt 101  Q
    |||||| ||||||||||  |||| ||||||| |||||||| ||| |||||||||  | ||||||||||||| ||||||| ||||||||||  ||||| ||    
T  35292207 agttgtcattgtattatttatgtattccattccattggatacaccccaaattggaggaaatgaaaatttggcttaatgggtggtattggattgaatgagt 35292108  T
Q  102 tccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcc 201  Q
    | |||||||||| |||||||||||||  |||||| ||||||||||||||        |||| ||||||  ||||||||| ||||||||||||||||||||    
T  35292107 tacatcacactccattccattccattccttttttgcaaaaccaaacaat--------ggaatatggttttatcccactccattccattccaccactctcc 35292016  T
Q  202 atcaatccaaacata 216  Q
    |||||||||||||||    
T  35292015 atcaatccaaacata 35292001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 50859327 - 50859126
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggttaa-tggatggtattggaaggaatgggttc 103  Q
    |||| |||||||||| ||||| ||||||| |||||||| ||| |||||||||| ||||||| ||||||| ||| ||| |||||||||| ||||||  |||    
T  50859327 ttgtaattgtattattaatgtgttccattccattggatacaccccaaattgggaggaatgacaatttggctaaatgggtggtattggatggaatgaattc 50859228  T
Q  104 catcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccat 203  Q
    |||||||||| ||||||| ||| |  |||||||||||||||||||||        |||||||| ||||||||||||| |||||||||||||||||| |||    
T  50859227 catcacactccattccatcccactctttttttacaaaaccaaacaat--------ggaacatgcttccatcccactccattccattccaccactcttcat 50859136  T
Q  204 caatccaaac 213  Q
    ||||| ||||    
T  50859135 caatcaaaac 50859126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 3121328 - 3121182
Alignment:
Q  65 aaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaac 163  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||  |||||| ||||||||||||||        ||||     
T  3121328 aaaatttggtttaatggatggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaat--------ggaat 3121237  T
Q  164 atggttccatcccactctattccattccaccactctccatcaatccaaacatagc 218  Q
    ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3121236 atggttttatcccactccattccattccaccactctccatcaatccaaacatagc 3121182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 22405174 - 22405046
Alignment:
Q  27 ttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattcca 125  Q
    ||||||| |||||||| ||||||||||||||||||||| ||| |||    ||||  |||||||||| |||||| |||||||||||||| |||||||||||    
T  22405174 ttccattccattggatacactccaaattgggtggaatggaaaattgaaggaatgattggtattggatggaatgagttccatcacactccattccattcca 22405075  T
Q  126 tttattttttacaaaaccaaacaatggaa 154  Q
    |   |||||||||||||||||||||||||    
T  22405074 tcctttttttacaaaaccaaacaatggaa 22405046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 31227841 - 31227714
Alignment:
Q  21 aatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggttaatgga-tggtattggaaggaatgggttccatcacactctattcc 119  Q
    ||||| ||||||| |||||||| |||||||| ||||| |||||||||| ||||||||  || |||||||||| ||||||  ||||||||||||  |||||    
T  31227841 aatgtattccattccattggatacactccaatttggg-ggaatgaaaaattggttaaatgagtggtattggatggaatgatttccatcacacttcattcc 31227743  T
Q  120 attccatttattttttacaaaaccaaaca 148  Q
    |||||||| ||||||||||||||||||||    
T  31227742 attccattcattttttacaaaaccaaaca 31227714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 46944207 - 46944056
Alignment:
Q  4 gttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggttaatgga-tggtattggaaggaatgggtt 102  Q
    ||||| ||| |||||| |||||  | |||| |||||||| ||| ||||||||||||||||| ||| |||   ||  || |||||||||| |||||| |||    
T  46944207 gttgtaattatattattaatgtgctacattccattggatacaccccaaattgggtggaatggaaaattgacaaaatgagtggtattggatggaatgagtt 46944108  T
Q  103 ccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  46944107 ccatcacactccattccattccattcattttttacataaccaaacaatggaa 46944056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 41223714 - 41223838
Alignment:
Q  87 ttggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattcc 186  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||   | |||     ||| |  ||||||||| |||||    
T  41223714 ttggatggaatgggttccatcacactccattccattccattcattttttacataaccaaacaatg---ggatg-----tggatatatcccactccattcc 41223805  T
Q  187 attccaccactctccatcaatccaaacatagcc 219  Q
    |||||| ||||||||||||||||||||||||||    
T  41223806 attccatcactctccatcaatccaaacatagcc 41223838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 35033797 - 35033998
Alignment:
Q  16 ttatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactct 114  Q
    |||| ||||| ||||||| |||||||| ||  | || ||||| |||||| ||| |||| | ||||  |||||||||| |||||| ||||||||||| ||     
T  35033797 ttattaatgtgttccattccattggatacatcctaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttccatcacattcc 35033896  T
Q  115 attccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaaca 214  Q
    |||||||||||||    |||| |||||||||||||||||| | ||  || |  ||||| |||| || |||||||||||||||||||||||||||||||||    
T  35033897 attccattccattacaattttgcaaaaccaaacaatggaa-tctg--actttattccaacccattccattccattccaccactctccatcaatccaaaca 35033993  T
Q  215 tagcc 219  Q
    |||||    
T  35033994 tagcc 35033998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 216
Target Start/End: Complemental strand, 48084799 - 48084633
Alignment:
Q  48 ccaaattgggtggaatgaaaatttggttaatgga-tggtattggaaggaatgggttccatcacactctattccattccattt-----attttttacaaaa 141  Q
    |||||||||| |||||||||| ||||||||  || |||||||||| | |||| ||||||| | |||| ||||||||| |||      |||||||||||||    
T  48084799 ccaaattggggggaatgaaaaattggttaaatgagtggtattggatgaaatgagttccataagactccattccattcaattctattaattttttacaaaa 48084700  T
Q  142 ccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaacata 216  Q
    |||||||||||||   ||     ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  48084699 ccaaacaatggaa---tg-----tggtttcatcccactccattccattccaccactctccatcaatccaaacata 48084633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 18895213 - 18895337
Alignment:
Q  223 gaggtgcactctggctattttttaattccttttcaatttctaattgtggccactttttcaccatattctcaaatgccac--aaaattgtgtgaggcatgt 320  Q
    |||| |||||||| |||||||| ||||| || ||||  ||||||||| ||||| || ||||||| ||||||||||||||  ||||||||||||| |||||    
T  18895213 gaggcgcactctgactatttttgaattcgttctcaacctctaattgtcgccaccttctcaccatcttctcaaatgccactaaaaattgtgtgagacatgt 18895312  T
Q  321 tgtattttctgcaatctctcccaaa 345  Q
    ||| ||| ||||||| |||||||||    
T  18895313 tgtttttcctgcaatatctcccaaa 18895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 21263630 - 21263702
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| ||||||||||||||||||||| || |||||||||   |||||||||||||||||||||||||    
T  21263630 tggtattggatggaatgggttccatcacactccatcccattccatcccttttttacaaaaccaaacaatggaa 21263702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 4292687 - 4292759
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| |||||| |||||||||||| | |||||||||||||  |||||| ||||||||||||||||||    
T  4292687 tggtattggatggaatgagttccatcacacaccattccattccattacttttttgcaaaaccaaacaatggaa 4292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 13779332 - 13779289
Alignment:
Q  168 ttccatcccactctattccattccaccactctccatcaatccaa 211  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  13779332 ttccatcccattccattccattccaccactctccatcaatccaa 13779289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 4342109 - 4342147
Alignment:
Q  116 ttccattccatttattttttacaaaaccaaacaatggaa 154  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  4342109 ttccattccattacttttttacaaaaccaaacaatggaa 4342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 41809861 - 41810016
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttc 103  Q
    |||| ||||| |||| ||||  ||||||| ||||| || ||  |||||||||| |||||| ||| |||| | ||||  ||||||   | |||||||||||    
T  41809861 ttgtaattgtcttattaatgcgttccattccattgaatacatcccaaattggggggaatggaaaattggatgaatgagtggtatatcatggaatgggttc 41809960  T
Q  104 catcacactctattccattccatt----ta-ttttttacaaaaccaaacaatggaa 154  Q
    ||||||| || ||||||||| |||    || |||||||||||||||||||||||||    
T  41809961 catcacattccattccattcaattccactatttttttacaaaaccaaacaatggaa 41810016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 461
Target Start/End: Complemental strand, 47104704 - 47104627
Alignment:
Q  384 tttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    |||||||||||||||  | ||||||  ||||||  | |||| |||||||| |||||||||||||| | ||||||||||    
T  47104704 tttattctcgtacattctagtacacctcatgcattaagaagagagaagaggagatgaaagagaaagtgtgtttgtgtg 47104627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 10354417 - 10354208
Alignment:
Q  3 agttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgggt 101  Q
    |||||| ||||||||||  |||| ||||||| |||||||| |||   || ||||| ||||||||||||||| ||||||| |||||||||| |||||| ||    
T  10354417 agttgtcattgtattatttatgtattccattccattggatacaccttaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagt 10354318  T
Q  102 tccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctcc 201  Q
    | |||| ||||| |||||||||||||  |||||| ||||| ||||||        || ||| ||||||  |||| |||| ||||||||||||||||||||    
T  10354317 ttcatcgcactccattccattccattccttttttgcaaaatcaaaca--------atagaatatggttttatcctactccattccattccaccactctcc 10354226  T
Q  202 atcaatccaaacatagcc 219  Q
    ||||||||||||||||||    
T  10354225 atcaatccaaacatagcc 10354208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 28219156 - 28219028
Alignment:
Q  27 ttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattccattcca 125  Q
    ||||||| |||||||| ||| ||||||||||||||||||||| |||    ||||  |||||||||| ||||||||||||||||||||| |||||||||||    
T  28219156 ttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccatcacactccattccattcca 28219057  T
Q  126 tttattttttacaaaaccaaacaatggaa 154  Q
    |   |||||||||||||||||||||||||    
T  28219056 tcccttttttacaaaaccaaacaatggaa 28219028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 7444724 - 7444858
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 181  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| | ||| | ||  | |||  ||| ||     
T  7444724 tggtattggatggaatgggttccatcacactccattccattccattcattttttagaaaaccaaacaatggaa-tgtgg-atat-atcccactccattcc 7444820  T
Q  182 attccattccaccactctccatcaatccaaacatagcc 219  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  7444821 attccattccatcactctccatcaatccaaacaaagcc 7444858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 1499191 - 1499338
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttc 103  Q
    |||| |||||||||| ||||  ||||||| |||||||| |||  ||||||||| | ||| |||| |||||| ||||  |||||||||| ||||||  |||    
T  1499191 ttgtaattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtattggatggaatgaattc 1499290  T
Q  104 catcacactctattccattccatttattttt-tacaaaaccaaacaat 150  Q
    |||||||||  |||||||||||||| ||||| ||||||| ||||||||    
T  1499291 catcacactgcattccattccatttttttttatacaaaagcaaacaat 1499338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 44246475 - 44246347
Alignment:
Q  21 aatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactctattcc 119  Q
    ||||| ||||||| |||||||| ||| ||||||||| ||||||||||| |||    ||||  |||||||||| |||||| |||||||||||||| |||||    
T  44246475 aatgtgttccattccattggatacaccccaaattggatggaatgaaaaattgaaagaatgagtggtattggatggaatgagttccatcacactccattcc 44246376  T
Q  120 attccatttattttttacaaaaccaaacaatgga 153  Q
    |||||     |||| |||||||||||||||||||    
T  44246375 attcc-----ttttatacaaaaccaaacaatgga 44246347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 28199194 - 28199393
Alignment:
Q  16 ttatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactct 114  Q
    |||| ||||| ||||||  |||||||| ||| |||| ||||| |||||| ||| |||  | ||||  |||||||||| |||||  ||||||||||| ||     
T  28199194 ttattaatgtgttccatcccattggatacaccccaatttgggaggaatggaaaattgaatgaatgagtggtattggatggaataagttccatcacattcc 28199293  T
Q  115 attccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaaca 214  Q
    |||| ||||||||    |||| |||||||||||||||||| | ||  ||    |||||||||| || |||||||||||||||||| ||||||||||||||    
T  28199294 attcgattccattacaattttccaaaaccaaacaatggaa-tctg--actctattccatcccattccattccattccaccactct-catcaatccaaaca 28199389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 17999917 - 18000035
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgggttc 103  Q
    |||| ||||| |||| ||||| ||||||| ||| |||| ||| |||||||||  ||| ||||||||||| ||||||  ||||||||||  |||||| |||    
T  17999917 ttgtcattgttttattaatgtattccattccatcggatacaccccaaattggaggga-tgaaaatttggcttaatgagtggtattggatagaatggattc 18000015  T
Q  104 catcacactctattccattc 123  Q
    |||||||||| |||||||||    
T  18000016 catcacactccattccattc 18000035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 6476806 - 6476769
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatagcc 219  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6476806 attccattccaccactctccatcaatccaaacatagcc 6476769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 18000080 - 18000115
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatag 217  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18000080 attccattccatcactctccatcaatccaaacatag 18000115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 44246336 - 44246301
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatag 217  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44246336 attccattccatcactctccatcaatccaaacatag 44246301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 17819960 - 17820021
Alignment:
Q  400 tttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    |||||||||  ||||||  | |||| |||||||| |||||||||||||||| ||||||||||    
T  17819960 tttgtacacctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtg 17820021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38679904 - 38679689
Alignment:
Q  1 aaagttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttgg-ttaatggatggtattggaaggaatgg 99  Q
    |||||||| |||||| ||| ||||| |||||||  ||||||| ||| ||||||| || ||||||||||||||| ||||||  | |||||| | ||||||     
T  38679904 aaagttgtcattgtactattaatgtattccattcaattggatacaccccaaatttgg-ggaatgaaaatttggcttaatgagtagtattgaatggaatga 38679806  T
Q  100 gttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactct 199  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||  |||  |  |  |  ||  |||||| ||||||||||| ||||||    
T  38679805 gttccatcacactccattccattctattcattttttacaaaaccaaacaatggaa-catg--attttatctcactccactccattccattccatcactct 38679709  T
Q  200 ccatcaatccaaacatagcc 219  Q
    ||||||||||||||||||||    
T  38679708 ccatcaatccaaacatagcc 38679689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 42025397 - 42025526
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactct 181  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||       |  |||||||||     
T  42025397 tggtattggatggaatgggttccatcacactccattcaattccattcattttttacaaaaccaaacaatggaa-tatgga-------tatatcccactcc 42025488  T
Q  182 attccattccaccactctccatcaatccaaacatagcc 219  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42025489 attccattccatcactctccatcaatccaaacaaagcc 42025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 34924794 - 34924922
Alignment:
Q  87 ttggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattcc 186  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| | | ||| | ||  | |||  ||| || |||||    
T  34924794 ttggatggaatgggttccatcacactccattccattccattcattttttacataaccaaacaatggga-tgtgg-atat-atcccactccattccattcc 34924890  T
Q  187 attccaccactctccatcaatccaaacatagc 218  Q
    |||||| |||||||||||||||||||||||||    
T  34924891 attccatcactctccatcaatccaaacatagc 34924922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 14112385 - 14112520
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttac-aaaaccaaacaatggaagtatggaacatggttccatcccactc 180  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| | | ||| | ||  | |||  ||| ||    
T  14112385 tggtattggatggaatcggttccatcacactctattccattccattcattttttactataaccaaacaatggga-tgtgg-atat-atcccactccattc 14112481  T
Q  181 tattccattccaccactctccatcaatccaaacatagcc 219  Q
     ||||||||||| ||||||||||||||||||||||||||    
T  14112482 cattccattccatcactctccatcaatccaaacatagcc 14112520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 30800270 - 30800196
Alignment:
Q  76 aatggatggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaat 150  Q
    |||| ||||||||||| |||||| |||||||||||||||||| ||||||| |  ||||||||||||| |||||||    
T  30800270 aatgaatggtattggatggaatgagttccatcacactctatttcattccactccttttttacaaaactaaacaat 30800196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 28873761 - 28873829
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaat 150  Q
    |||||||||| ||||| ||||||||||||| | |||||||| ||||  |||||||||||||||||||||    
T  28873761 tggtattggatggaataggttccatcacacaccattccatttcattccttttttacaaaaccaaacaat 28873829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 448
Target Start/End: Original strand, 42354506 - 42354592
Alignment:
Q  362 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaa 448  Q
    |||| |||| |||| || ||| ||||||||| |||| | || ||||| |||||||  | |||| |||||||||||||||||||||||    
T  42354506 ggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaa 42354592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 448
Target Start/End: Original strand, 34012232 - 34012300
Alignment:
Q  380 accctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaa 448  Q
    |||||||||||||||||| | |||||||| |||||||  | |||| |||||||| |||  |||||||||    
T  34012232 accctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaa 34012300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 30107 - 30287
Alignment:
Q  5 ttgtgattgtattatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttc 103  Q
    |||| ||||| |||| ||||| |||||||||||||||| ||| |||||||||| |||||| ||| |||| | ||||  ||||||  || |||||||||||    
T  30107 ttgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttc 30206  T
Q  104 catcacactctattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattcca 192  Q
    ||||||| || |||||||||||||  |||||||||||||||||||        ||||||||||| |||||||||||| |||||||||||    
T  30207 catcacattccattccattccattatttttttacaaaaccaaaca--------atggaacatggctccatcccactccattccattcca 30287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 38552 - 38739
Alignment:
Q  15 attatcaatgttttccatttcattggattcactccaaattgggtggaatgaaaatttggtt-aatggatggtattggaaggaatgggttccatcacactc 113  Q
    ||||| ||||| ||||||| |||||||| ||  ||||||||  ||||||||||| ||||   ||||  |||||||||| |||||||||||||||||||||    
T  38552 attattaatgtgttccattccattggatacatcccaaattgaatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 38651  T
Q  114 tattccattccatttattttttacaaaaccaaacaatggaagtatggaacatggttccatcccactctattccattccaccactctccatcaatccaaac 213  Q
     ||||||||||     |||||||||||||||||||        ||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||    
T  38652 cattccattcc-----ttttttacaaaaccaaaca--------atggaacatggttccatcccac-----tccattccatcactctccatcaatcaaaac 38733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 56998 - 56928
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatgg 152  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  56998 tggtattggatggaattggttccatcacactctattccattccattcattttttacataaccaaacaatgg 56928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 56901 - 56864
Alignment:
Q  182 attccattccaccactctccatcaatccaaacatagcc 219  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  56901 attcccttccatcactctccatcaatccaaacatagcc 56864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 12470 - 12545
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattcc---atttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| ||||||||||||||||||||| ||||||||||   |||| |||||||||||||||||||||||||    
T  12470 tggtattggatggaatgggttccatcacactccattccattccattattttttttttacaaaaccaaacaatggaa 12545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 238 - 310
Alignment:
Q  82 tggtattggaaggaatgggttccatcacactctattccattccatttattttttacaaaaccaaacaatggaa 154  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||    
T  238 tggtattggatggaatgggttccatcacactccattccattccatcccatttttacaaaaccaaacaatggaa 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 31952948 - 31953054
Alignment:
Q  362 ggaagatgtcacatggataccctttattctcgtacatctttgtacactccatgcaacacgaagtgagaagagaagatgaaagagaaaatatgtttgtgtg 461  Q
    |||| |||| |||| || ||| ||||||||| |||||| || ||||| |||||||  | |||| ||||||||||||||||||||||| | ||||||||||    
T  31952948 ggaaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgtgtg 31953047  T
Q  462 atgtcca 468  Q
    | |||||    
T  31953048 aggtcca 31953054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 33870249 - 33870203
Alignment:
Q  255 tcaatttctaattgtggccactttttcaccatattctcaaatgccac 301  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||    
T  33870249 tcaacttctaattgtcgccactttttcaccattttctcaaatgccac 33870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 462
Target Start/End: Original strand, 9379697 - 9379730
Alignment:
Q  429 aagagaagatgaaagagaaaatatgtttgtgtga 462  Q
    |||||||||||||||||||||| |||||||||||    
T  9379697 aagagaagatgaaagagaaaatgtgtttgtgtga 9379730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University