View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_high_18 (Length: 462)
Name: NF11571_high_18
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 16605682 - 16606105
Alignment:
| Q |
18 |
atcaagacacactctacgcacactcaaatcgccaattctatcgcgaatgcaacatatacggaacagtcgatttcattttcggaaactcagccgttgtatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16605682 |
atcaagacacactctacgcacactcaaatcgccaattctaccgcgaatgcaacatatacggaacagtcgatttcattttcggaaactcagccgtcgtatt |
16605781 |
T |
|
| Q |
118 |
acaaaactgcaacattttaccaagacaacctatgccaggacagcagaacacaataacagcacaaggcaaaactgatcctaacatgaacacaggaatttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16605782 |
acaaaactgcaacattttaccaagacaacctatgccaggacagcagaacacaataacagcacaaggcaaaactgatcctaacatgaacacaggaatttca |
16605881 |
T |
|
| Q |
218 |
attcaaaattgcaatgtttcgccttttggaaacttgagttctgttaaaacatatttaggtagaccttggaagaattactcaacaacagtgtttatgcaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16605882 |
attcaaaattgcaatgtttcgccttttggaaacttgagttctgttaaaacatatttaggtagaccttggaagaattactcaacaacagtgtttatgcaat |
16605981 |
T |
|
| Q |
318 |
cgaacttgggaaattttattagtccaaatggatggttaccttgggttggagattctgcaccagatactatattctatgctgaatttcagaatgttggagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16605982 |
cgaacttgggaaattttattagtccaaatggatggttaccttgggttggagattctgcaccagatactatattctatgctgaatttcagaatgttggagg |
16606081 |
T |
|
| Q |
418 |
tggtgcttccatgaagaatagggt |
441 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16606082 |
tggtgcttccatgaagaatagggt |
16606105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 16608214 - 16608156
Alignment:
| Q |
170 |
ataacagcacaaggcaaaactgatcctaacatgaacacaggaatttcaattcaaaattg |
228 |
Q |
| |
|
|||||||||||||| | ||||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
16608214 |
ataacagcacaaggtagaactgatccaaatcagaacacaggaatttcaatacaaaattg |
16608156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 2578607 - 2578415
Alignment:
| Q |
18 |
atcaagacacactctacgcacactcaaatcgccaattctatcgcgaatgcaacatatacggaacagtcgatttcattttcggaaactcagccgttgtatt |
117 |
Q |
| |
|
|||||||||| || || || || || ||||||||||| ||| | ||||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| | |
|
|
| T |
2578607 |
atcaagacactctttatgctcattccaatcgccaattttatagagaatgcaacatttatggaacagttgatttcatttttggaaattcagctgttgtgat |
2578508 |
T |
|
| Q |
118 |
acaaaactgcaacattttaccaagacaacctatgccaggacagcagaacacaataacagcacaaggcaaaactgatcctaacatgaacacagg |
210 |
Q |
| |
|
||||||||||||||| | || | |||||||| ||||| |||| ||| || ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
2578507 |
tcaaaactgcaacattatgcctaagttacctatgcatggacaacagatcactatcacagcacaaggaaaaactgaccctaacatgaacacagg |
2578415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 415
Target Start/End: Complemental strand, 2577794 - 2577585
Alignment:
| Q |
206 |
acaggaatttcaattcaaaattgcaatgtttcgccttttggaaacttgagttctgttaaaacatatttaggtagaccttggaagaattactcaacaacag |
305 |
Q |
| |
|
||||| || ||||||||| |||| || |||| |||| ||||||||||||| ||||||| |||| | || ||||| ||||||||||||||||| |||| |
|
|
| T |
2577794 |
acaggtatctcaattcaatattgtaacatttcaccttatggaaacttgagtaatgttaaagtatatcttggaagaccatggaagaattactcaaccacag |
2577695 |
T |
|
| Q |
306 |
tgtttatgcaatcgaacttgggaaattttattagtccaaatggatggttaccttgggttggagattctgcaccagatactatattctatgctgaatttca |
405 |
Q |
| |
|
| | ||| | | | ||| |||||||| ||||||||| |||||||||||||| ||| | || ||||||||||| || || ||||| |||||||| |
|
|
| T |
2577694 |
tttacatgagaacaagaatggatggttttattaatccaaatggttggttaccttgggtaggaaactcagcaccagatacaattttttatgcagaatttca |
2577595 |
T |
|
| Q |
406 |
gaatgttgga |
415 |
Q |
| |
|
|||||||||| |
|
|
| T |
2577594 |
gaatgttgga |
2577585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 8731606 - 8731491
Alignment:
| Q |
20 |
caagacacactctacgcacactcaaatcgccaattctatcgcgaatgcaacatatacggaacagtcgatttcattttcggaaactcagccgttgtattac |
119 |
Q |
| |
|
||||||||||| |||| ||||| || || |||||||| ||||| || |||||||||||||| |||||||||| ||||| || ||||||| || |||| |
|
|
| T |
8731606 |
caagacacactttacgtccactcgaaccgacaattctaccgcgactgtcacatatacggaacaatcgatttcatcttcggcgacgcagccgtcgtgttac |
8731507 |
T |
|
| Q |
120 |
aaaactgcaacatttt |
135 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
8731506 |
aaaactgcgacatttt |
8731491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University