View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_high_19 (Length: 459)
Name: NF11571_high_19
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 151 - 367
Target Start/End: Complemental strand, 1316434 - 1316218
Alignment:
| Q |
151 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316434 |
ttaggctctggacaatatgtttatgtaaaattgcatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
1316335 |
T |
|
| Q |
251 |
tcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgac |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316334 |
tcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgac |
1316235 |
T |
|
| Q |
351 |
agagtaaattggtacaa |
367 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1316234 |
agagtaaattggtacaa |
1316218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 1316627 - 1316474
Alignment:
| Q |
1 |
aaaactggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316627 |
aaaactggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtg |
1316528 |
T |
|
| Q |
101 |
cccgggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
154 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316527 |
cctgggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
1316474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 1049963 - 1050041
Alignment:
| Q |
363 |
tacaacacatgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacactacctaca |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1049963 |
tacaacacatgagaaatctcttgagtctcattttctaacaattttttccaactataatatttagggtacactagctaca |
1050041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 1090685 - 1090764
Alignment:
| Q |
363 |
tacaacacatgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctaca |
441 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1090685 |
tacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctaca |
1090764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 1076879 - 1076952
Alignment:
| Q |
363 |
tacaacacatgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacacta |
435 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076879 |
tacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacacta |
1076952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 1300141 - 1300068
Alignment:
| Q |
363 |
tacaacacatgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacacta |
435 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300141 |
tacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacacta |
1300068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 1107089 - 1107152
Alignment:
| Q |
371 |
atgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacact |
434 |
Q |
| |
|
|||||||| | |||||||||| ||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
1107089 |
atgagaaaacccttgagtctctttttctaacaattttttctaactataaaatttagggtacact |
1107152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 43486758 - 43486621
Alignment:
| Q |
1 |
aaaactggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagt- |
99 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43486758 |
aaaattggattaggatttggcatataccatgaaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtg |
43486659 |
T |
|
| Q |
100 |
-gcccgggaggcagggagataatgctggaaaaactagt |
136 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||| |
|
|
| T |
43486658 |
ggaccaggaggcagggagataatgctggaaaaactagt |
43486621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 43483871 - 43483760
Alignment:
| Q |
241 |
ttgaactcgttcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaa |
340 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43483871 |
ttgaactcattcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaagaaatacaacaagaattaattttaataagtaaa |
43483772 |
T |
|
| Q |
341 |
agcatgtgacag |
352 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43483771 |
agcatgtgacag |
43483760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 43486549 - 43486463
Alignment:
| Q |
151 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43486549 |
ttaggctctggacaatatgtttatgtaaaattgcaatgtttgtttgattttaatgtcaagtcaaatacattaattgcttcaatagtc |
43486463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University