View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_high_2 (Length: 885)

Name: NF11571_high_2
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_high_2
NF11571_high_2
[»] chr8 (11 HSPs)
chr8 (382-754)||(6580461-6580837)
chr8 (298-545)||(6616348-6616590)
chr8 (357-541)||(6757681-6757861)
chr8 (357-541)||(6659686-6659866)
chr8 (357-541)||(6740088-6740268)
chr8 (749-874)||(6581019-6581144)
chr8 (27-252)||(6616141-6616351)
chr8 (826-874)||(6612385-6612433)
chr8 (565-619)||(35793178-35793232)
chr8 (561-600)||(5945357-5945396)
chr8 (565-619)||(22786554-22786608)
[»] scaffold0470 (3 HSPs)
scaffold0470 (298-545)||(5634-5876)
scaffold0470 (27-252)||(5427-5637)
scaffold0470 (826-874)||(1673-1721)
[»] chr4 (2 HSPs)
chr4 (565-615)||(9116266-9116316)
chr4 (561-615)||(40202280-40202334)
[»] chr3 (5 HSPs)
chr3 (565-615)||(39994200-39994250)
chr3 (565-615)||(4037150-4037200)
chr3 (565-615)||(10688617-10688667)
chr3 (565-615)||(11233515-11233565)
chr3 (565-615)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (564-615)||(36436058-36436109)
chr7 (565-615)||(16876748-16876798)
chr7 (565-615)||(18867959-18868009)
chr7 (565-615)||(23185934-23185984)
chr7 (565-615)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (565-615)||(6139327-6139377)
chr6 (565-615)||(7506641-7506691)
chr6 (565-615)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (565-615)||(3496810-3496860)
chr2 (565-615)||(11226155-11226205)
chr2 (565-615)||(15141889-15141939)
chr2 (565-615)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (565-619)||(26478571-26478625)
chr1 (565-615)||(27032331-27032381)
chr1 (565-615)||(27907712-27907762)
chr1 (565-615)||(51748561-51748611)
chr1 (566-615)||(24671166-24671215)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 382 - 754
Target Start/End: Original strand, 6580461 - 6580837
Alignment:
Q  382 gttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttc 481  Q
    ||||||||||| |||||||||| |||||||| | ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | | |||||||||    
T  6580461 gttaactttatctcttagtaagcgaaatctcctttcaacatgcttgctttttccatggttaattgataattttctaaatcaattgttagcgagaagtttc 6580560  T
Q  482 attcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttgacaagcaacaaatgtatcatttcatatctctcttttaacta 581  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6580561 attcaagcaatctcagtaatcttcaattcttcaagcaacattttaatccatagtgcttgacaagcaacaaatgtatcatttcatatttctcttttaacta 6580660  T
Q  582 ctcattctctctcatttaattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtcgatgataaccaaaatgagattcttt 681  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6580661 ctcattctctctcatataattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtagatgatagccaaaatgagattcttt 6580760  T
Q  682 ttat--tctatttttctcacaacatggtgttaatgtttttgtcctttgtgg--tctgtcactcttgttttctaggtt 754  Q
    ||||  |||||||||||||||||||||||| |||| ||||||||||  |||  ||||||||||||||||| ||||||    
T  6580761 ttattctctatttttctcacaacatggtgtcaatgcttttgtccttcctggtctctgtcactcttgttttttaggtt 6580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 298 - 545
Target Start/End: Original strand, 6616348 - 6616590
Alignment:
Q  298 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgttacgttaactttatatctt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||    
T  6616348 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgtta-----actttatctctt 6616442  T
Q  398 agtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttcattcaagcaatctcag 497  Q
    ||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  6616443 agtaagtgaaatctcctttcaacatgcttgctttttccatggttaattgataatttgctaaatgaattgttaacaagaagtttcattcaagcaatctcag 6616542  T
Q  498 taatcttcaattcttcaagcaacatttcaatccttagtgcttgacaag 545  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  6616543 taatattcaattcttcaagcaacatttcaatccatagtgcttgacaag 6616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 357 - 541
Target Start/End: Original strand, 6757681 - 6757861
Alignment:
Q  357 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgct 456  Q
    |||||||| |||||||||||||||     |||| || |||||| |||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||    
T  6757681 taaagttcgaaactatctttgtta-----acttgatctcttaggaagtgaaatctcctttcaacatgcttgcttcttccatggttaattgctaatttgct 6757775  T
Q  457 aaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagc-aacatttcaatccttagtgcttga 541  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||    
T  6757776 aaatcaattgtcaaaaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaaacatttcaatccatagtgcttga 6757861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 357 - 541
Target Start/End: Original strand, 6659686 - 6659866
Alignment:
Q  357 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattga-taatttgc 455  Q
    |||||||| |||||||||||||||     |||| || || ||| |||| ||||||  | ||||||||||| |||||||||||||||||||| ||||||||    
T  6659686 taaagttcgaaactatctttgtta-----acttgatctcgtaggaagtcaaatctactttcaacatgcttgcttcttccatggttaattgagtaatttgc 6659780  T
Q  456 taaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttga 541  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  6659781 taaatcaattgtcaacaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaacatttcaatccatagtacttga 6659866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 357 - 541
Target Start/End: Original strand, 6740088 - 6740268
Alignment:
Q  357 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattga-taatttgc 455  Q
    |||||||| |||||||||||||||     |||| || || ||| |||| ||||||  | ||||||||||| |||||||||||||||||||| ||||||||    
T  6740088 taaagttcgaaactatctttgtta-----acttgatctcgtaggaagtcaaatctactttcaacatgcttgcttcttccatggttaattgagtaatttgc 6740182  T
Q  456 taaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttga 541  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  6740183 taaatcaattgtcaacaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaacatttcaatccatagtacttga 6740268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 749 - 874
Target Start/End: Original strand, 6581019 - 6581144
Alignment:
Q  749 taggtttaagtgaaagagttgaagttgtggtcccttgtgtctctttccttaaaacatctacgatgtcggttcttttatacgtctactatatatgcctcat 848  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||| ||||||||| ||||    
T  6581019 taggtttacttgaaagagttgaagttgtggtcccttgtatctctttccttaaaaaatcttcgatgtgggttcttttatacatctattatatatgcttcat 6581118  T
Q  849 atttctctccttatcccctcctctct 874  Q
    ||||||||||||||||||||||||||    
T  6581119 atttctctccttatcccctcctctct 6581144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 27 - 252
Target Start/End: Original strand, 6616141 - 6616351
Alignment:
Q  27 gatgaatggactaatgctgatatacatagtcatttcaatctctaactaccataataacttgttccacaagtcatgaaactaccataactaccaatactaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||         |||||||||||    
T  6616141 gatgaatggactaatgctgatatacatagtcatttcaatctctaact------------tgttccataagtcatgaaact---------accaatactaa 6616219  T
Q  127 ctatactaatcgactaactttc---ataacaaacaagaaagttacttaacaacatagataactggt----tcaacaagtaatcattatctaatcatgaat 219  Q
    || |||||||||||||||||||   ||||||||| |||| |||| |||||||||||||||||| ||    | |||||||||||| |||||||||||||||    
T  6616220 ctgtactaatcgactaactttcataataacaaactagaatgttagttaacaacatagataacttgtttaattaacaagtaatcagtatctaatcatgaat 6616319  T
Q  220 tacaacacttcacacctcctaattcatgattgc 252  Q
    ||||||| |||| ||||||||||||||||||||    
T  6616320 tacaaca-ttcagacctcctaattcatgattgc 6616351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 826 - 874
Target Start/End: Original strand, 6612385 - 6612433
Alignment:
Q  826 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 874  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612385 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 6612433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 619
Target Start/End: Original strand, 35793178 - 35793232
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 619  Q
    ||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||    
T  35793178 tatctctctcttaactactcattatctctcatttaaataatttattttaattatt 35793232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 561 - 600
Target Start/End: Complemental strand, 5945396 - 5945357
Alignment:
Q  561 ttcatatctctcttttaactactcattctctctcatttaa 600  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  5945396 ttcatatctctcttttaactaatcattctctctcatttaa 5945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 619
Target Start/End: Original strand, 22786554 - 22786608
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 619  Q
    ||||||||||||||| | ||||||||| |||||||| | ||||| ||||||||||    
T  22786554 tatctctcttttaaccattcattctctttcatttaaataatttactttaattatt 22786608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 298 - 545
Target Start/End: Original strand, 5634 - 5876
Alignment:
Q  298 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgttacgttaactttatatctt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||    
T  5634 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgtta-----actttatctctt 5728  T
Q  398 agtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttcattcaagcaatctcag 497  Q
    ||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  5729 agtaagtgaaatctcctttcaacatgcttgctttttccatggttaattgataatttgctaaatgaattgttaacaagaagtttcattcaagcaatctcag 5828  T
Q  498 taatcttcaattcttcaagcaacatttcaatccttagtgcttgacaag 545  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  5829 taatattcaattcttcaagcaacatttcaatccatagtgcttgacaag 5876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 27 - 252
Target Start/End: Original strand, 5427 - 5637
Alignment:
Q  27 gatgaatggactaatgctgatatacatagtcatttcaatctctaactaccataataacttgttccacaagtcatgaaactaccataactaccaatactaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||         |||||||||||    
T  5427 gatgaatggactaatgctgatatacatagtcatttcaatctctaact------------tgttccataagtcatgaaact---------accaatactaa 5505  T
Q  127 ctatactaatcgactaactttc---ataacaaacaagaaagttacttaacaacatagataactggt----tcaacaagtaatcattatctaatcatgaat 219  Q
    || |||||||||||||||||||   ||||||||| |||| |||| |||||||||||||||||| ||    | |||||||||||| |||||||||||||||    
T  5506 ctgtactaatcgactaactttcataataacaaactagaatgttagttaacaacatagataacttgtttaattaacaagtaatcagtatctaatcatgaat 5605  T
Q  220 tacaacacttcacacctcctaattcatgattgc 252  Q
    ||||||| |||| ||||||||||||||||||||    
T  5606 tacaaca-ttcagacctcctaattcatgattgc 5637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 826 - 874
Target Start/End: Original strand, 1673 - 1721
Alignment:
Q  826 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 874  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1673 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 1721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 9116316 - 9116266
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  9116316 tatctcttttttaacaactcattctctctcatttaaataatttattttaat 9116266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 561 - 615
Target Start/End: Complemental strand, 40202334 - 40202280
Alignment:
Q  561 ttcatatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||| ||||||||||| ||||||||||| |||| ||| | ||||||||||||    
T  40202334 ttcatatgtctcttttaaccactcattctctttcatctaaataatttattttaat 40202280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 39994200 - 39994250
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||||||||| |||||||||||||||| ||| | ||||||||||||    
T  39994200 tatctctcttttaacaactcattctctctcatctaaataatttattttaat 39994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 4037150 - 4037200
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  4037150 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 4037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 10688617 - 10688667
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  10688617 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 10688667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 11233515 - 11233565
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11233515 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11233565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 49279498 - 49279548
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  49279498 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 49279548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 615
Target Start/End: Complemental strand, 36436109 - 36436058
Alignment:
Q  564 atatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||||| |||||| ||||||||||||||  || ||||||||||||||    
T  36436109 atatctctcttctaactaatcattctctctcatcaaaatgatttattttaat 36436058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 16876798 - 16876748
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  16876798 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 16876748  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 18868009 - 18867959
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  18868009 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 18867959  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 23185984 - 23185934
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  23185984 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 23185934  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 46425399 - 46425349
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  46425399 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 46425349  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 6139327 - 6139377
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||||||||| | |||||||||||||| ||| | ||||||||||||    
T  6139327 tatctctcttttaaccattcattctctctcatctaaataatttattttaat 6139377  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 7506641 - 7506691
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 7506691  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 9928270 - 9928320
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  9928270 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 9928320  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 3496860 - 3496810
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  3496860 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 3496810  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 11226155 - 11226205
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11226155 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11226205  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 15141889 - 15141939
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||||||||| ||| |||||||||||| ||| | ||||||||||||    
T  15141889 tatctctcttttaacaacttattctctctcatctaaataatttattttaat 15141939  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 19037128 - 19037078
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 19037078  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 619
Target Start/End: Original strand, 26478571 - 26478625
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 619  Q
    ||||| ||||||||| | ||||| ||| |||||||| ||||||||||||||||||    
T  26478571 tatctttcttttaacaattcattatctttcatttaaatgatttattttaattatt 26478625  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 27032381 - 27032331
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27032381 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27032331  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 27907712 - 27907762
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27907712 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27907762  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 615
Target Start/End: Original strand, 51748561 - 51748611
Alignment:
Q  565 tatctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    ||||| ||||||||| |||||||||||||||| ||| | ||||||||||||    
T  51748561 tatctttcttttaacaactcattctctctcatctaaataatttattttaat 51748611  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 615
Target Start/End: Original strand, 24671166 - 24671215
Alignment:
Q  566 atctctcttttaactactcattctctctcatttaattgatttattttaat 615  Q
    |||| ||| ||||| |||||||||||||||||||| | ||||||||||||    
T  24671166 atctttctcttaaccactcattctctctcatttaaataatttattttaat 24671215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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