View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_high_20 (Length: 451)

Name: NF11571_high_20
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_high_20
NF11571_high_20
[»] chr4 (51 HSPs)
chr4 (17-437)||(49680164-49680588)
chr4 (313-426)||(43444318-43444429)
chr4 (313-426)||(53616703-53616815)
chr4 (319-426)||(29965565-29965671)
chr4 (313-426)||(2115640-2115752)
chr4 (308-426)||(56194519-56194637)
chr4 (307-427)||(9283830-9283948)
chr4 (313-426)||(51317911-51318021)
chr4 (307-418)||(50766570-50766679)
chr4 (313-426)||(8009414-8009523)
chr4 (307-423)||(20569171-20569288)
chr4 (313-426)||(38706763-38706874)
chr4 (307-425)||(34024491-34024606)
chr4 (319-426)||(25273811-25273919)
chr4 (307-426)||(4643777-4643894)
chr4 (315-426)||(9528930-9529040)
chr4 (307-426)||(31381725-31381841)
chr4 (313-426)||(10389807-10389917)
chr4 (307-364)||(47416803-47416860)
chr4 (307-426)||(9645602-9645719)
chr4 (329-426)||(868105-868198)
chr4 (313-426)||(37188647-37188756)
chr4 (328-427)||(1531847-1531945)
chr4 (313-426)||(6972734-6972846)
chr4 (313-366)||(35351271-35351324)
chr4 (314-426)||(14183729-14183839)
chr4 (313-425)||(21090078-21090187)
chr4 (319-366)||(43154132-43154179)
chr4 (328-366)||(2624438-2624476)
chr4 (313-423)||(10359603-10359710)
chr4 (307-363)||(27593952-27594008)
chr4 (307-366)||(35261110-35261170)
chr4 (313-361)||(49072873-49072921)
chr4 (313-366)||(35965085-35965139)
chr4 (328-365)||(46991242-46991279)
chr4 (385-426)||(47417657-47417698)
chr4 (325-358)||(52978744-52978777)
chr4 (314-358)||(1008221-1008265)
chr4 (307-366)||(12265374-12265434)
chr4 (313-365)||(32952858-32952910)
chr4 (308-366)||(18139023-18139082)
chr4 (376-427)||(43154066-43154117)
chr4 (308-366)||(49126236-49126295)
chr4 (315-361)||(21405440-21405486)
chr4 (332-366)||(44947353-44947387)
chr4 (307-352)||(5333656-5333701)
chr4 (325-358)||(29120519-29120552)
chr4 (326-358)||(26091070-26091102)
chr4 (330-358)||(27651872-27651900)
chr4 (318-358)||(31891445-31891485)
chr4 (330-358)||(52944236-52944264)
[»] chr1 (44 HSPs)
chr1 (307-426)||(5701168-5701287)
chr1 (313-426)||(7997704-7997817)
chr1 (313-427)||(20266219-20266331)
chr1 (313-426)||(35584671-35584785)
chr1 (313-426)||(14545437-14545547)
chr1 (313-426)||(28035056-28035167)
chr1 (313-426)||(30878992-30879104)
chr1 (307-426)||(51868698-51868815)
chr1 (307-426)||(19715948-19716067)
chr1 (307-426)||(51871775-51871891)
chr1 (335-426)||(31836745-31836835)
chr1 (313-411)||(50148289-50148387)
chr1 (313-425)||(27872656-27872765)
chr1 (313-428)||(30818397-30818509)
chr1 (308-427)||(25406336-25406453)
chr1 (307-425)||(9919300-9919416)
chr1 (328-426)||(11453868-11453963)
chr1 (308-366)||(25728070-25728128)
chr1 (313-426)||(45426119-45426226)
chr1 (329-426)||(3871342-3871436)
chr1 (317-426)||(34519054-34519160)
chr1 (313-426)||(50272193-50272304)
chr1 (331-423)||(19723268-19723358)
chr1 (313-426)||(40881065-40881177)
chr1 (313-366)||(18569421-18569474)
chr1 (307-426)||(9172399-9172518)
chr1 (307-426)||(9180381-9180500)
chr1 (313-401)||(40646605-40646692)
chr1 (315-426)||(50166152-50166261)
chr1 (328-426)||(33291471-33291567)
chr1 (313-426)||(5324611-5324721)
chr1 (313-421)||(38520592-38520697)
chr1 (376-426)||(7342700-7342750)
chr1 (325-426)||(44637351-44637449)
chr1 (376-426)||(9687257-9687307)
chr1 (316-364)||(45805922-45805970)
chr1 (313-366)||(7312209-7312262)
chr1 (325-358)||(16161734-16161767)
chr1 (325-358)||(34413247-34413280)
chr1 (325-358)||(48750091-48750124)
chr1 (334-366)||(9687324-9687356)
chr1 (314-358)||(15492182-15492226)
chr1 (318-358)||(36775873-36775913)
chr1 (384-420)||(45805875-45805911)
[»] chr2 (39 HSPs)
chr2 (307-426)||(30420588-30420706)
chr2 (307-426)||(27249204-27249321)
chr2 (307-426)||(36233916-36234036)
chr2 (307-426)||(45128115-45128232)
chr2 (307-437)||(4192750-4192877)
chr2 (307-427)||(21570459-21570578)
chr2 (307-427)||(6173543-6173661)
chr2 (307-426)||(2808525-2808640)
chr2 (307-426)||(7015764-7015880)
chr2 (313-420)||(32680640-32680746)
chr2 (319-426)||(32913165-32913269)
chr2 (307-426)||(40626081-40626197)
chr2 (328-426)||(40659985-40660080)
chr2 (307-426)||(41430939-41431056)
chr2 (313-426)||(3270282-3270392)
chr2 (307-426)||(8971680-8971798)
chr2 (313-426)||(34598905-34599015)
chr2 (313-426)||(8805784-8805894)
chr2 (331-426)||(9986395-9986491)
chr2 (313-425)||(27949340-27949453)
chr2 (319-424)||(22421659-22421761)
chr2 (313-426)||(26025463-26025573)
chr2 (308-365)||(31581831-31581888)
chr2 (318-366)||(42949637-42949685)
chr2 (308-425)||(3725093-3725207)
chr2 (307-365)||(27477066-27477124)
chr2 (325-426)||(4228061-4228161)
chr2 (313-426)||(20047135-20047246)
chr2 (313-423)||(41712821-41712929)
chr2 (313-366)||(39641970-39642023)
chr2 (383-426)||(25087022-25087065)
chr2 (383-426)||(31580642-31580685)
chr2 (338-426)||(3269164-3269251)
chr2 (338-426)||(3269723-3269810)
chr2 (325-358)||(3308848-3308881)
chr2 (318-362)||(18694970-18695014)
chr2 (318-358)||(23933778-23933818)
chr2 (325-358)||(10237370-10237403)
chr2 (377-426)||(39310935-39310984)
[»] chr6 (27 HSPs)
chr6 (313-426)||(25064148-25064260)
chr6 (313-426)||(7876097-7876209)
chr6 (313-426)||(7881155-7881267)
chr6 (307-426)||(8496872-8496991)
chr6 (313-426)||(8196460-8196571)
chr6 (307-426)||(4468466-4468582)
chr6 (307-426)||(17237338-17237454)
chr6 (313-426)||(17334688-17334802)
chr6 (313-426)||(23947371-23947481)
chr6 (307-426)||(12652847-12652968)
chr6 (307-426)||(33740631-33740748)
chr6 (313-426)||(8028171-8028282)
chr6 (313-426)||(16419071-16419182)
chr6 (313-366)||(33109747-33109800)
chr6 (328-426)||(12165769-12165864)
chr6 (316-426)||(35001506-35001614)
chr6 (328-426)||(4088388-4088484)
chr6 (376-426)||(4984620-4984670)
chr6 (319-358)||(4984697-4984736)
chr6 (317-364)||(9508829-9508876)
chr6 (307-426)||(10228586-10228703)
chr6 (383-425)||(7027815-7027857)
chr6 (318-364)||(13436705-13436751)
chr6 (329-366)||(25337499-25337536)
chr6 (313-366)||(25398479-25398532)
chr6 (313-361)||(33543734-33543783)
chr6 (318-358)||(28981070-28981110)
[»] chr3 (32 HSPs)
chr3 (307-427)||(32607372-32607491)
chr3 (307-426)||(44907451-44907569)
chr3 (307-426)||(35499251-35499371)
chr3 (313-426)||(36906032-36906143)
chr3 (313-440)||(4172477-4172602)
chr3 (313-420)||(14464418-14464525)
chr3 (313-426)||(17237713-17237826)
chr3 (313-426)||(29503373-29503483)
chr3 (307-443)||(38855072-38855207)
chr3 (314-426)||(25631579-25631690)
chr3 (307-422)||(2342396-2342509)
chr3 (313-426)||(25162347-25162457)
chr3 (313-426)||(12116004-12116119)
chr3 (307-423)||(50611473-50611587)
chr3 (307-426)||(46934547-46934663)
chr3 (313-426)||(4178475-4178586)
chr3 (315-423)||(38440634-38440739)
chr3 (313-425)||(39917451-39917560)
chr3 (307-366)||(3850566-3850625)
chr3 (336-426)||(30648772-30648860)
chr3 (307-426)||(49552277-49552393)
chr3 (308-366)||(22802927-22802986)
chr3 (328-363)||(31794005-31794040)
chr3 (348-426)||(51202307-51202385)
chr3 (385-426)||(42719497-42719538)
chr3 (307-366)||(46178481-46178541)
chr3 (383-426)||(3848972-3849015)
chr3 (313-364)||(21488022-21488073)
chr3 (330-365)||(33579772-33579807)
chr3 (330-358)||(7546516-7546544)
chr3 (318-366)||(42719436-42719484)
chr3 (325-357)||(51923629-51923661)
[»] chr5 (43 HSPs)
chr5 (307-426)||(30371634-30371752)
chr5 (313-426)||(26578165-26578278)
chr5 (307-426)||(7246868-7246985)
chr5 (307-424)||(2057893-2058008)
chr5 (307-426)||(7241692-7241809)
chr5 (307-426)||(18677518-18677636)
chr5 (307-426)||(27266912-27267030)
chr5 (307-426)||(7150388-7150505)
chr5 (307-366)||(10649363-10649422)
chr5 (319-426)||(30298130-30298234)
chr5 (313-423)||(43261875-43261981)
chr5 (313-426)||(781305-781415)
chr5 (313-426)||(19280998-19281108)
chr5 (313-426)||(21060335-21060445)
chr5 (308-426)||(16981201-16981316)
chr5 (328-426)||(42579811-42579914)
chr5 (316-426)||(19259864-19259974)
chr5 (328-419)||(27751857-27751945)
chr5 (307-426)||(36344544-36344659)
chr5 (376-426)||(3271455-3271505)
chr5 (316-366)||(20257805-20257855)
chr5 (307-426)||(28235495-28235611)
chr5 (319-426)||(34881631-34881744)
chr5 (307-425)||(7886992-7887107)
chr5 (376-426)||(41184493-41184543)
chr5 (376-426)||(43148707-43148757)
chr5 (328-365)||(35475448-35475485)
chr5 (328-364)||(1696979-1697015)
chr5 (314-358)||(14211118-14211162)
chr5 (313-426)||(42886395-42886504)
chr5 (329-365)||(10148730-10148766)
chr5 (313-365)||(27576461-27576513)
chr5 (313-352)||(11767723-11767762)
chr5 (330-364)||(3271521-3271555)
chr5 (326-364)||(31802587-31802625)
chr5 (325-358)||(2979469-2979502)
chr5 (313-366)||(7613167-7613220)
chr5 (325-358)||(28541069-28541102)
chr5 (325-358)||(39567194-39567227)
chr5 (329-365)||(1582233-1582269)
chr5 (329-365)||(1602546-1602582)
chr5 (376-426)||(10649623-10649670)
chr5 (328-364)||(35631803-35631839)
[»] chr8 (37 HSPs)
chr8 (313-426)||(2655789-2655901)
chr8 (307-426)||(4808878-4808995)
chr8 (307-426)||(9498652-9498772)
chr8 (313-426)||(14906976-14907088)
chr8 (307-426)||(9619410-9619528)
chr8 (307-426)||(43890177-43890295)
chr8 (308-443)||(44577951-44578084)
chr8 (325-426)||(11464102-11464202)
chr8 (313-426)||(35580378-35580488)
chr8 (307-426)||(11725596-11725712)
chr8 (307-426)||(33895995-33896113)
chr8 (307-426)||(42448080-42448198)
chr8 (328-426)||(11196825-11196920)
chr8 (313-426)||(19876132-19876242)
chr8 (307-426)||(44099987-44100102)
chr8 (328-426)||(34611739-34611835)
chr8 (328-426)||(37565932-37566028)
chr8 (319-426)||(43192399-43192503)
chr8 (307-426)||(9072631-9072749)
chr8 (376-426)||(29777200-29777250)
chr8 (319-365)||(32724601-32724647)
chr8 (329-366)||(15597277-15597314)
chr8 (307-363)||(17949161-17949217)
chr8 (331-366)||(33298794-33298829)
chr8 (313-366)||(28239753-28239807)
chr8 (383-426)||(32724534-32724577)
chr8 (318-357)||(41896405-41896444)
chr8 (313-366)||(16794213-16794267)
chr8 (328-365)||(12184220-12184257)
chr8 (328-365)||(12428648-12428685)
chr8 (313-366)||(17427329-17427382)
chr8 (313-366)||(17430979-17431032)
chr8 (329-366)||(39153256-39153293)
chr8 (330-358)||(14585606-14585634)
chr8 (325-357)||(18890861-18890893)
chr8 (330-358)||(26469351-26469379)
chr8 (331-366)||(33342375-33342411)
[»] chr7 (38 HSPs)
chr7 (307-420)||(2843288-2843397)
chr7 (313-426)||(21266305-21266414)
chr7 (307-426)||(46338960-46339078)
chr7 (307-426)||(46821921-46822039)
chr7 (307-426)||(48207809-48207925)
chr7 (307-426)||(23425425-23425541)
chr7 (313-426)||(1485310-1485420)
chr7 (313-426)||(35496228-35496339)
chr7 (313-426)||(35667285-35667395)
chr7 (313-426)||(22927923-22928034)
chr7 (313-426)||(42408275-42408386)
chr7 (307-426)||(26492272-26492389)
chr7 (307-426)||(26583621-26583738)
chr7 (307-423)||(42311187-42311301)
chr7 (339-426)||(17223052-17223136)
chr7 (307-426)||(23085428-23085545)
chr7 (376-423)||(34773685-34773732)
chr7 (313-426)||(1448883-1448993)
chr7 (313-366)||(20116496-20116549)
chr7 (313-366)||(32684598-32684651)
chr7 (313-426)||(45199085-45199195)
chr7 (307-366)||(31235902-31235962)
chr7 (313-426)||(433744-433856)
chr7 (328-426)||(42067114-42067209)
chr7 (308-426)||(14627932-14628048)
chr7 (376-425)||(6558851-6558900)
chr7 (315-363)||(3860867-3860915)
chr7 (313-366)||(36143779-36143832)
chr7 (318-358)||(1749300-1749340)
chr7 (318-358)||(5546277-5546317)
chr7 (318-358)||(24351000-24351040)
chr7 (331-366)||(7640893-7640928)
chr7 (385-423)||(23786558-23786596)
chr7 (377-426)||(7640825-7640874)
chr7 (325-358)||(22742839-22742872)
chr7 (325-358)||(28476122-28476155)
chr7 (328-361)||(32522042-32522075)
chr7 (325-358)||(48930681-48930714)
[»] scaffold0146 (1 HSPs)
scaffold0146 (313-426)||(16373-16486)
[»] scaffold0014 (1 HSPs)
scaffold0014 (314-426)||(201425-201534)
[»] scaffold0311 (1 HSPs)
scaffold0311 (313-411)||(8633-8728)
[»] scaffold0264 (1 HSPs)
scaffold0264 (383-426)||(20449-20492)
[»] scaffold0495 (1 HSPs)
scaffold0495 (307-426)||(5305-5422)
[»] scaffold0003 (1 HSPs)
scaffold0003 (328-426)||(361852-361945)
[»] scaffold0426 (1 HSPs)
scaffold0426 (307-357)||(6245-6295)
[»] scaffold0888 (1 HSPs)
scaffold0888 (325-358)||(1831-1864)
[»] scaffold0113 (1 HSPs)
scaffold0113 (313-358)||(36804-36849)
[»] scaffold0002 (1 HSPs)
scaffold0002 (318-358)||(453851-453891)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 49680164 - 49680588
Alignment:
Q  17 agaattggccatggttctaaaatcattgcgttattgcaatctatagatagattggtgggtttagacaaatcttgtgaagtaggttttggatcggaatatg 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49680164 agaattggccatggttctaaaatcattgcgttattgcgatctatagatagattggtgggtttagacaaatcttgtgaagtaggttttggatcggaatatg 49680263  T
Q  117 tttctatcactttttctttacgtggccacaaaaagactcactcatttcttaatcaatcacttgcattctct--tatgagttatgaacacatctactgatg 214  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  49680264 tttctatcactttttctttacgtggccagaaaaagactcactcatttcttaatcaatcacttgcattctcttatatgagttatgaacacatctactgatg 49680363  T
Q  215 tttttggtggaaatctatctaatgaatgtaaatatgcaatgcgaactaaataatagctgaacgctgctcctaatctctccatctccaacaagccctcctc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||    
T  49680364 tttttggtggaaatctatctaatgaatgtaaatatgcaatgcgaactaaataatagctgaacgttgctcctaatctctccctctccaacaagccctcttc 49680463  T
Q  315 atctttttcgctttatttcaatctaaataagtgattttcacatagatctagg--nnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||           |||||||||||||||||||||||||||||||||||||    
T  49680464 atctttttctctttatttcaatccaaataagtgattttcacatggatctaggtttttttttttctttgtaatttcatcatctaagtgtggtgatttgtta 49680563  T
Q  413 ttcgtcgtcttgtgttttgttgttt 437  Q
    |||||||||||||||| ||||||||    
T  49680564 ttcgtcgtcttgtgttgtgttgttt 49680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 43444318 - 43444429
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||     
T  43444318 tcatctttttctctttatttcaatctaaataagtgattttcacatatatctaggttttttt--ctttgtaatttcatcatctaagtgtggtgatttgttg 43444415  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  43444416 ttcgtcgtcttgtg 43444429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 53616815 - 53616703
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||     
T  53616815 tcatcgttttctctttatttcaatctaaataagtgattttcacatagatctaggtttttttt-ctttgtaatttcatcatctaagtgtggtgatttgttg 53616717  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  53616716 ttcgtcgtcttgtg 53616703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 319 - 426
Target Start/End: Original strand, 29965565 - 29965671
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtc 418  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||| ||||||    
T  29965565 ttttctctttatttcaatctaaataagtgattttcacatagatctaggtttttttt-ctttgtaatttcatcatctaagtgtggtgatttgttgttcgtc 29965663  T
Q  419 gtcttgtg 426  Q
    ||||||||    
T  29965664 gtcttgtg 29965671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 2115752 - 2115640
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||||||||||||     
T  2115752 tcatctttttctctttatttcaatctaaataagtgattttcacatagatttagg-ttttttttctttgtaatttcatcatctaagtgtggtgatttgttg 2115654  T
Q  413 ttcgtcgtcttgtg 426  Q
    || |||||||||||    
T  2115653 tttgtcgtcttgtg 2115640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 308 - 426
Target Start/End: Original strand, 56194519 - 56194637
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatt 407  Q
    |||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| |||||||||||||||||||||| ||    
T  56194519 cctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaggtttttttttctttgtgatttcatcatctaagtgtggtggtt 56194618  T
Q  408 tgttattcgtcgtcttgtg 426  Q
    |||| ||||||||||||||    
T  56194619 tgttgttcgtcgtcttgtg 56194637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 427
Target Start/End: Original strand, 9283830 - 9283948
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||          ||||||||||||||||||||||||||||||    
T  9283830 ccctcttcatcgttttctctttatttcaatctaaataagtgatttttacatagatctaggttttttta--tttgtaatttcatcatctaagtgtggtgat 9283927  T
Q  407 ttgttattcgtcgtcttgtgt 427  Q
    ||||| || ||||||||||||    
T  9283928 ttgttgtttgtcgtcttgtgt 9283948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 51317911 - 51318021
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||||||||||     
T  51317911 tcatctttttctctctatttcaatctaaataagtgattttcacatagatctagg---ttttttctttttgatttcatcatctaagtgtggtgatttgttg 51318007  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  51318008 ttcgtcgtcttgtg 51318021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 50766679 - 50766570
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |         |||||||||||||||||||||||||||||||    
T  50766679 ccctcttcatctttttctctttatttcaatctaaataaatgattttcacatagatctaag--tttttttctttgtaatttcatcatctaagtgtggtgat 50766582  T
Q  407 ttgttattcgtc 418  Q
    ||||| ||||||    
T  50766581 ttgttgttcgtc 50766570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 8009523 - 8009414
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||| ||||||     
T  8009523 tcatctttttctctctatttcaatctaaataagtgattttcacatagatctag----ttttttctttgtgatttcatcatctaagtgtggtggtttgttg 8009428  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  8009427 ttcgtcgtcttgtg 8009414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 20569171 - 20569288
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg-nnnnnnnnnctttgtaatttcatcatctaagtgtggtga 405  Q
    ||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||          |||| |||||||||||||||||||||||||    
T  20569171 ccctcttcatttttttctctttatttcaatctaaataaatgattttcacatagatctaggttttttttttctttataatttcatcatctaagtgtggtga 20569270  T
Q  406 tttgttattcgtcgtctt 423  Q
    |||||| |||||||||||    
T  20569271 tttgttgttcgtcgtctt 20569288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 38706874 - 38706763
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| ||||         |||||| |||||||||||||||||||||| ||||||     
T  38706874 tcatctttttctctctatttcaatctaaataagtgattttcacatagatttagg--tttttttctttgtgatttcatcatctaagtgtggtggtttgttg 38706777  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  38706776 ttcgtcgtcttgtg 38706763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 34024606 - 34024491
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||||         |||| | |||||||||||||||||||||| |    
T  34024606 ccctcttcatctttttctctctatttcaatctaaataagttattttcacatagatctagg---ttttttctttttgatttcatcatctaagtgtggtggt 34024510  T
Q  407 ttgttattcgtcgtcttgt 425  Q
    ||||| |||||||||||||    
T  34024509 ttgttgttcgtcgtcttgt 34024491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 319 - 426
Target Start/End: Original strand, 25273811 - 25273919
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctagg-nnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgt 417  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||| |||||| |||||    
T  25273811 ttttctctctatttcaatctaaataagtgattttcacatagatctaggttttttttttctttgtgatttcatcatctaagtgtggtggtttgttgttcgt 25273910  T
Q  418 cgtcttgtg 426  Q
    |||||||||    
T  25273911 cgtcttgtg 25273919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 4643777 - 4643894
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||| |         |||||| |||||||||||||||||||||| |    
T  4643777 ccctcttcatctttttctctctatttcaatctaaataagtga-tttcacatagatcta-gattttttttctttgtgatttcatcatctaagtgtggtggt 4643874  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  4643875 ttgttgttcgtcgtcttgtg 4643894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 426
Target Start/End: Complemental strand, 9529040 - 9528930
Alignment:
Q  315 atctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttatt 414  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| || |         |||||| ||||||||||||||||||| || |||||| ||    
T  9529040 atctttttctctttatttcaatctaaataagtgattttcacatagatttatg-ttttttttctttgtgatttcatcatctaagtgtgatggtttgttgtt 9528942  T
Q  415 cgtcgtcttgtg 426  Q
    ||||||||||||    
T  9528941 cgtcgtcttgtg 9528930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 31381841 - 31381725
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    |||| |||||||||||| || | ||||||| ||||||||||||||||||||||||||| |         |||||| |||||||||||||||||||||| |    
T  31381841 cccttctcatctttttctctctttttcaatttaaataagtgattttcacatagatctaagtttttt---ctttgtgatttcatcatctaagtgtggtggt 31381745  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  31381744 ttgttgttcgtcgtcttgtg 31381725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 10389917 - 10389807
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         | || | |||||||||||||||||||||| ||||||     
T  10389917 tcatctttttctctctatttcaatctaaataagtgactttcacatagatctagg---ttttttccttttgatttcatcatctaagtgtggtggtttgttg 10389821  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  10389820 ttcgtcgtcttgtg 10389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 47416803 - 47416860
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatcta 364  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47416803 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatcta 47416860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 9645719 - 9645602
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||  || ||||||||||||||||||||| |||||||||||||||||         |||||  |||||||||||||||||||||| |    
T  9645719 ccctcttcatctttttgtctctatttcaatctaaataagtgactttcacatagatctagg--tttttttctttgcgatttcatcatctaagtgtggtggt 9645622  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
     |||| ||||||||||||||    
T  9645621 gtgttgttcgtcgtcttgtg 9645602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 426
Target Start/End: Original strand, 868105 - 868198
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||| ||||||||||||||||||          |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  868105 atttcaatctaaataagttattttcacatagatctag----atttttctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 868198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 37188756 - 37188647
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| ||||||          |||||| |||||||||| ||||||||||| ||||||     
T  37188756 tcatctttttctctatatttcaatctaaataagtgattttcacatatatctag----ttttttctttgtgatttcatcatttaagtgtggtggtttgttg 37188661  T
Q  413 ttcgtcgtcttgtg 426  Q
    |||||||| |||||    
T  37188660 ttcgtcgttttgtg 37188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 427
Target Start/End: Original strand, 1531847 - 1531945
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtgt 427  Q
    ||||||||||||||||||||||||||||||||||||| |         |||||| |||||||||||||||||||||| |||||| |  ||||||||||||    
T  1531847 tatttcaatctaaataagtgattttcacatagatcta-gattttttttctttgtgatttcatcatctaagtgtggtggtttgttgtctgtcgtcttgtgt 1531945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 6972734 - 6972846
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||  || ||||||||||||||||||||| ||| ||||||||| | |         |||||| |||||||||||||||||||||| ||||||     
T  6972734 tcatctttttatctgtatttcaatctaaataagtgacttttacatagatccatgtttttttt-ctttgtgatttcatcatctaagtgtggtggtttgttg 6972832  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  6972833 ttcgtcgtcttgtg 6972846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 35351324 - 35351271
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  35351324 tcatccttttcgctttatttcaatttaaataagtgatattcacatagatctagg 35351271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 426
Target Start/End: Original strand, 14183729 - 14183839
Alignment:
Q  314 catctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttat 413  Q
    |||||||||| || |||||||||||||||||||||||||||||  |||||| |         |||||| |||||| ||||||||||||||| |||||| |    
T  14183729 catctttttctctctatttcaatctaaataagtgattttcacaaggatctaag--tttttttctttgtgatttcaccatctaagtgtggtggtttgttgt 14183826  T
Q  414 tcgtcgtcttgtg 426  Q
    |||| ||||||||    
T  14183827 tcgtagtcttgtg 14183839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 21090078 - 21090187
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||| ||||         ||| || |||||||||||||| | ||||| ||||||     
T  21090078 tcatctttttctctctatttcaatataaataagtgattttcacatagatttagg---ttttttcttcgtgatttcatcatctaaatatggtggtttgttg 21090174  T
Q  413 ttcgtcgtcttgt 425  Q
    |||||||||||||    
T  21090175 ttcgtcgtcttgt 21090187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 43154179 - 43154132
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||    
T  43154179 ttttctctctatttcaatctaaataagtgattttcacatagatctagg 43154132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 2624438 - 2624476
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2624438 tatttcaatctaaataagtgattttcacatagatctagg 2624476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 423
Target Start/End: Complemental strand, 10359710 - 10359603
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||| |||||||||||||||||| ||||| |||||||         ||| || |||||||||||||||||||||| ||||||     
T  10359710 tcatctttttctctctatttcgatctaaataagtgattttaacatatatctagg---ttttttcttcgtgatttcatcatctaagtgtggtggtttgttg 10359614  T
Q  413 ttcgtcgtctt 423  Q
    |||| ||||||    
T  10359613 ttcgccgtctt 10359603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 27594008 - 27593952
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatct 363  Q
    ||||| ||||||||||| || |||||||||||||||||| || ||||||||||||||    
T  27594008 ccctcttcatctttttctctatatttcaatctaaataagcgagtttcacatagatct 27593952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 35261110 - 35261170
Alignment:
Q  307 ccctcctcatctttttcg-ctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||| |||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||    
T  35261110 ccctcttcatctttttcctctttattgcaatctaaataagtgattttcacatagatttagg 35261170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 49072921 - 49072873
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagat 361  Q
    |||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  49072921 tcatatttttctctttatttcaatctatataagtgattttcacatagat 49072873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 35965139 - 35965085
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    ||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||    
T  35965139 tcatctttttctctctatttcaatctgaataagtgatttttcacatagatctagg 35965085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 46991279 - 46991242
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctag 365  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  46991279 tatttcaatctaaatgagtgattttcacatagatctag 46991242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 47417657 - 47417698
Alignment:
Q  385 ttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  47417657 ttcatcatctaaatgtggtgatttgttgttcgtcgtcttgtg 47417698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 52978744 - 52978777
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    ||||||||||||||||||||||||||||||||||    
T  52978744 ctttatttcaatctaaataagtgattttcacata 52978777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 1008221 - 1008265
Alignment:
Q  314 catctttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||||||| || ||||| |||||||||||||||||||||||||    
T  1008221 catctttttctctctattttaatctaaataagtgattttcacata 1008265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 12265374 - 12265434
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    ||||| ||||||||||  |  ||||||||||||||||||||| ||||||||||||||||||    
T  12265374 ccctcttcatctttttatccctatttcaatctaaataagtgatttttcacatagatctagg 12265434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 32952910 - 32952858
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctag 365  Q
    ||||||||||| || ||||||||  |||||||||| |||||||||||||||||    
T  32952910 tcatctttttctctctatttcaaattaaataagtgtttttcacatagatctag 32952858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 18139082 - 18139023
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    |||| ||||| ||||| || ||||||||||||||||||||| |||||||||| |||||||    
T  18139082 cctcttcatcattttctctctatttcaatctaaataagtgatttttcacatacatctagg 18139023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 43154117 - 43154066
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtgt 427  Q
    |||||| |||| ||||| ||||||||||| |||||| |||||||||||||||    
T  43154117 ctttgtgattttatcatttaagtgtggtggtttgttgttcgtcgtcttgtgt 43154066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 49126295 - 49126236
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    |||| ||||| ||||| || ||||||||||||||||||||| |||||||||| |||||||    
T  49126295 cctcttcatcattttctctctatttcaatctaaataagtgatttttcacatacatctagg 49126236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 21405440 - 21405486
Alignment:
Q  315 atctttttcgctttatttcaatctaaataagtgattttcacatagat 361  Q
    ||||||| | || ||||||||||||| ||||||||||||||||||||    
T  21405440 atcttttcctctctatttcaatctaattaagtgattttcacatagat 21405486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 44947353 - 44947387
Alignment:
Q  332 tcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||||||||||||||||||| ||||||||||||    
T  44947353 tcaatctaaataagtgattttcgcatagatctagg 44947387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 5333701 - 5333656
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgatttt 352  Q
    ||||| ||||||||||| || ||||||||| |||||||||||||||    
T  5333701 ccctcttcatctttttctctctatttcaatataaataagtgatttt 5333656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 29120552 - 29120519
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    ||||||||||||||||||||||| ||||||||||    
T  29120552 ctttatttcaatctaaataagtggttttcacata 29120519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 26091102 - 26091070
Alignment:
Q  326 tttatttcaatctaaataagtgattttcacata 358  Q
    |||||||||||||||||||||| ||||||||||    
T  26091102 tttatttcaatctaaataagtggttttcacata 26091070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 358
Target Start/End: Original strand, 27651872 - 27651900
Alignment:
Q  330 tttcaatctaaataagtgattttcacata 358  Q
    |||||||||||||||||||||||||||||    
T  27651872 tttcaatctaaataagtgattttcacata 27651900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 31891485 - 31891445
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| |||| ||||||||||||||||||||||| |||||    
T  31891485 tttttccctttctttcaatctaaataagtgatttttacata 31891445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 358
Target Start/End: Original strand, 52944236 - 52944264
Alignment:
Q  330 tttcaatctaaataagtgattttcacata 358  Q
    |||||||||||||||||||||||||||||    
T  52944236 tttcaatctaaataagtgattttcacata 52944264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 5701168 - 5701287
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  5701168 ccctcttcatctttttctctttatttcaatttaaataagtgattttcacatagatctaggtttttttttctttgtaatttcatcatctaagtgtggtgat 5701267  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  5701268 ttgttgttcgtcgtcttgtg 5701287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 7997704 - 7997817
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||     
T  7997704 tcatctttttctctttatttcaatataaataagtgattttcacatagatctaggtttttttttctttgtaatttcatcatctaagtgtggtgatttgttg 7997803  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  7997804 ttcgtcgtcttgtg 7997817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 313 - 427
Target Start/End: Original strand, 20266219 - 20266331
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||     
T  20266219 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctag--ctttttttctttgtaatttcatcatctaagtgtggtgatttgttg 20266316  T
Q  413 ttcgtcgtcttgtgt 427  Q
    |||||||||||||||    
T  20266317 ttcgtcgtcttgtgt 20266331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 35584785 - 35584671
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg-nnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtt 411  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||          ||||||||||| || |||||||||||||||||||||    
T  35584785 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttttttttctttgtaattttataatctaagtgtggtgatttgtt 35584686  T
Q  412 attcgtcgtcttgtg 426  Q
     ||||||||||||||    
T  35584685 gttcgtcgtcttgtg 35584671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 14545437 - 14545547
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| ||||||     
T  14545437 tcatctttttctctatatttcaatctaaataagtgattttcacatagatctagg---ttttttctttgtgatttcatcatctaagtgtggtggtttgttg 14545533  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  14545534 ttcgtcgtcttgtg 14545547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 28035056 - 28035167
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| ||||||     
T  28035056 tcatctttttctctctatttcaatctaaataagtgattttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtggtttgttg 28035153  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  28035154 ttcgtcgtcttgtg 28035167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 30878992 - 30879104
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |         ||||||||||||||||| ||||||||||||||||||     
T  30878992 tcatctttttctctttattttaatctaaataagtgattttcacatagatctatg-ttttttttctttgtaatttcatcatttaagtgtggtgatttgttg 30879090  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  30879091 ttcgtcgtcttgtg 30879104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 51868815 - 51868698
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| |||||||||||||||||||||| |    
T  51868815 ccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtggt 51868718  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  51868717 ttgttgttcgtcgtcttgtg 51868698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 19716067 - 19715948
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg-nnnnnnnnnctttgtaatttcatcatctaagtgtggtga 405  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||          | ||||||||||||||||||||||||||||    
T  19716067 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatttaggttttttttttcattgtaatttcatcatctaagtgtggtga 19715968  T
Q  406 tttgttattcgtcgtcttgtg 426  Q
     ||||| ||||||||||||||    
T  19715967 -ttgttgttcgtcgtcttgtg 19715948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 51871775 - 51871891
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||          |||||| |||||||||||||||||||||| |    
T  51871775 ccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctag---cttttttctttgtgatttcatcatctaagtgtggtggt 51871871  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  51871872 ttgttgttcgtcgtcttgtg 51871891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 31836745 - 31836835
Alignment:
Q  335 atctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31836745 atctaaataagtgattttcacatagatctaggtttttttt-ctttgtaatttcatcatctaagtgtggtgatttgttgttcgtcgtcttgtg 31836835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 313 - 411
Target Start/End: Original strand, 50148289 - 50148387
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtt 411  Q
    ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||    
T  50148289 tcatccttttctctttattttaatctaaataagtgattttcacatagatctaggtttttttttctttgtaatttcatcttctaagtgtggtgatttgtt 50148387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 27872656 - 27872765
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |         ||| || ||| |||||||||||||||||| ||||||     
T  27872656 tcatctttttcgctctatttcaatctaaataagtgattttcacatagatctaag---ttttttcttcgtgattgcatcatctaagtgtggtggtttgttg 27872752  T
Q  413 ttcgtcgtcttgt 425  Q
    |||||||||||||    
T  27872753 ttcgtcgtcttgt 27872765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 30818509 - 30818397
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| ||||||           ||||| |||||||||||||||||||||| ||||||     
T  30818509 tcatctttttctctctatttcaatctaaataagtgattttcacataaatctag---tttttttttttgtgatttcatcatctaagtgtggtggtttgttg 30818413  T
Q  413 ttcgtcgtcttgtgtt 428  Q
    ||||||||||||||||    
T  30818412 ttcgtcgtcttgtgtt 30818397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 427
Target Start/End: Complemental strand, 25406453 - 25406336
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatt 407  Q
    |||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| ||||| |||||||||||||||| ||    
T  25406453 cctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctagg--tttttttctttgtgatttcgtcatctaagtgtggtggtt 25406356  T
Q  408 tgttattcgtcgtcttgtgt 427  Q
    | || |||||||||||||||    
T  25406355 tattgttcgtcgtcttgtgt 25406336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 307 - 425
Target Start/End: Original strand, 9919300 - 9919416
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||| |         |||||| |||||| ||||||||||||||| |    
T  9919300 ccctcttcatctttttctctctatttcaatctaaataagtgatttttacatagatctatg--tttttttctttgtgatttcaccatctaagtgtggtggt 9919397  T
Q  407 ttgttattcgtcgtcttgt 425  Q
    ||||| |||||||||||||    
T  9919398 ttgttgttcgtcgtcttgt 9919416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 11453868 - 11453963
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  11453868 tatttcaatctaaataagtggttttcacatagatctaggtttttt---ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 11453963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 25728128 - 25728070
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25728128 cctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg 25728070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 45426226 - 45426119
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||||| |          ||||| |||||||||||||||||||||| ||||||     
T  45426226 tcatctttttctctctatttaaatctaaataagtgattttcacatagatctaagtttt------tttgtgatttcatcatctaagtgtggtggtttgttg 45426133  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  45426132 ttcgtcgtcttgtg 45426119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 426
Target Start/End: Original strand, 3871342 - 3871436
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||||||||||||||||| |         |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  3871342 atttcaatctaaataagtgattttcacatagatctaagtttttt---ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 3871436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 426
Target Start/End: Original strand, 34519054 - 34519160
Alignment:
Q  317 ctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcg 416  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||| |||||| ||||    
T  34519054 ctttttctctctatttcaatctaaataagtgattttcacatagatctagg---ttttttctttttgatttcatcatctaagtgtggtggtttgttgttcg 34519150  T
Q  417 tcgtcttgtg 426  Q
    |||| |||||    
T  34519151 tcgttttgtg 34519160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 50272304 - 50272193
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |         |||||| |||||||| ||||||| ||||||||||||     
T  50272304 tcatctttttctctttatttcaatctaaataagtaattttcacatagatctaag--tttttttctttgtgatttcatcttctaagtttggtgatttgttg 50272207  T
Q  413 ttcgtcgtcttgtg 426  Q
    |||||||| |||||    
T  50272206 ttcgtcgttttgtg 50272193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 423
Target Start/End: Original strand, 19723268 - 19723358
Alignment:
Q  331 ttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtctt 423  Q
    ||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| |||||| |||||||||||    
T  19723268 ttcaatctaaataagtgattttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtctt 19723358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 40881177 - 40881065
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||| |||||||||||| ||||||||||          ||||  |||||||||||||||||||||| ||||||     
T  40881177 tcatctttttctctctatttcaatctaaatgagtgattttcacttagatctaggttttttttt-tttgagatttcatcatctaagtgtggtggtttgttg 40881079  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  40881078 ttcgtcgtcttgtg 40881065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 18569474 - 18569421
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  18569474 tcatctttttctctctatttcaatctaaataagtgattttcacatagatctagg 18569421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 9172399 - 9172518
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||| |||||  || ||||||||||||||||||||| |||||||||||||||||          | ||| |||| ||||||||||||||||| |    
T  9172399 ccctcttcatatttttttctctatttcaatctaaataagtgactttcacatagatctaggtttttttctttgtgtgattttatcatctaagtgtggtggt 9172498  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  9172499 ttgttgttcgtcgtcttgtg 9172518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 9180381 - 9180500
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||| |||||  || ||||||||||||||||||||| |||||||||||||||||          | ||| |||| ||||||||||||||||| |    
T  9180381 ccctcttcatatttttttctctatttcaatctaaataagtgactttcacatagatctaggtttttttctttgtgtgattttatcatctaagtgtggtggt 9180480  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  9180481 ttgttgttcgtcgtcttgtg 9180500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 40646605 - 40646692
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtg 401  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||||||||         ||||||||||||||||||||||||||    
T  40646605 tcatctttttctatttatttcaatctaaataagtgattttcacgtagatctagg-ttttttttctttgtaatttcatcatctaagtgtg 40646692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 426
Target Start/End: Complemental strand, 50166261 - 50166152
Alignment:
Q  315 atctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttatt 414  Q
    |||||||||  | ||||||||||||||||||||| |||||||||||| ||||         || ||| |||||||||||||||||||||| |||||| ||    
T  50166261 atctttttctatctatttcaatctaaataagtgaatttcacatagatttaggttttttt--ctatgtgatttcatcatctaagtgtggtggtttgttgtt 50166164  T
Q  415 cgtcgtcttgtg 426  Q
    ||||||||||||    
T  50166163 cgtcgtcttgtg 50166152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 33291567 - 33291471
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||| ||||||||||||||||||||| ||||| |         |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  33291567 tatttcaatataaataagtgattttcacataaatctatgttttttt--ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 33291471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 5324721 - 5324611
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||| || || || |         |||||| |||||||||||||||||||||| ||||||     
T  5324721 tcatctttttctctctatttcaatctaaataagtgattttcacgtaaatttaagtttttc---ctttgtgatttcatcatctaagtgtggtggtttgttg 5324625  T
Q  413 ttcgtcgtcttgtg 426  Q
    |||| |||||||||    
T  5324624 ttcgccgtcttgtg 5324611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 38520697 - 38520592
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||||| |         ||| || ||||||||||||||| |||||| ||||||     
T  38520697 tcatctttttctctctatttcgatctaaataagtgattttcacatagatctatg---ttttttcttcgtgatttcatcatctaagagtggtggtttgttg 38520601  T
Q  413 ttcgtcgtc 421  Q
    |||||||||    
T  38520600 ttcgtcgtc 38520592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 7342700 - 7342750
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  7342700 ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 7342750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 44637351 - 44637449
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttg 424  Q
    ||||||||||||||||||||||||||||||| |||||||| |         |||||| ||||| |||||||| ||||||||| |||| ||||| ||||||    
T  44637351 ctttatttcaatctaaataagtgattttcacgtagatctaag---tttcttctttgtgatttcgtcatctaaatgtggtgatgtgttgttcgtagtcttg 44637447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 9687307 - 9687257
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| |||||||||||||||||||||| |||||| |||||| |||||||    
T  9687307 ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcatcttgtg 9687257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 45805970 - 45805922
Alignment:
Q  316 tctttttcgctttatttcaatctaaataagtgattttcacatagatcta 364  Q
    |||||||| || ||||||||||||||||||||| ||||||||| |||||    
T  45805970 tctttttctctctatttcaatctaaataagtgactttcacataaatcta 45805922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 7312262 - 7312209
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||| || ||||||||  ||||||| |||||||||| ||||||||||    
T  7312262 tcatctttttctctctatttcaaattaaataaatgattttcacgtagatctagg 7312209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 16161734 - 16161767
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    ||||||||||||||||||||||||||| ||||||    
T  16161734 ctttatttcaatctaaataagtgatttccacata 16161767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 34413280 - 34413247
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  34413280 ctttctttcaatctaaataagtgattttcacata 34413247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 48750091 - 48750124
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  48750091 ctttctttcaatctaaataagtgattttcacata 48750124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 9687356 - 9687324
Alignment:
Q  334 aatctaaataagtgattttcacatagatctagg 366  Q
    |||||||||||||||||||||||||||| ||||    
T  9687356 aatctaaataagtgattttcacatagatatagg 9687324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 15492182 - 15492226
Alignment:
Q  314 catctttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    ||||||||||  ||| ||||||||||||||| |||||||||||||    
T  15492182 catctttttccatttctttcaatctaaataaatgattttcacata 15492226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 36775913 - 36775873
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  36775913 tttttccctttctttcaatctaaataaatgattttcacata 36775873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 45805911 - 45805875
Alignment:
Q  384 tttcatcatctaagtgtggtgatttgttattcgtcgt 420  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  45805911 tttcatcatctaagtgtggtggtttgttgttcgtcgt 45805875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 30420588 - 30420706
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  30420588 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg-ttttttttctttgtaatttcatcatctaagtgtggtgat 30420686  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  30420687 ttgttgttcgtcgtcttgtg 30420706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 27249321 - 27249204
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||  ||||||||||||||||    
T  27249321 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg--tttttttctttgtaatttcaagatctaagtgtggtgat 27249224  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  27249223 ttgttgttcgtcgtcttgtg 27249204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 36233916 - 36234036
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctag-gnnnnnnnnnctttgtaatttcatcatctaagtgtggtga 405  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  36233916 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctagattttttttttctttgtaatttcatcatctaagtgtggtga 36234015  T
Q  406 tttgttattcgtcgtcttgtg 426  Q
    ||| || ||||||||||||||    
T  36234016 ttttttgttcgtcgtcttgtg 36234036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 45128115 - 45128232
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||         |||||| |||||||||||||||||||||| |    
T  45128115 ccctcttcatctttttctctttatttcaatctaaataagtgactttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtggt 45128212  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  45128213 ttgttgttcgtcgtcttgtg 45128232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 4192750 - 4192877
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||||||| || ||||         |||||| |||||||||||||||||||||| |    
T  4192750 ccctcttcatctttttctctatatttcaatctaaataagtgattttcacatatatttaggtttttt---ctttgtgatttcatcatctaagtgtggtggt 4192846  T
Q  407 ttgttattcgtcgtcttgtgttttgttgttt 437  Q
    ||||| |||||||||||||||  ||||||||    
T  4192847 ttgttgttcgtcgtcttgtgtggtgttgttt 4192877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 427
Target Start/End: Complemental strand, 21570578 - 21570459
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |          ||||| |||||||||||||||||||||| |    
T  21570578 ccctcttcatctttttctctatatttcaatctaaataagtgattttcacatagatcta-gattttttttttttgtgatttcatcatctaagtgtggtggt 21570480  T
Q  407 ttgttattcgtcgtcttgtgt 427  Q
    ||||| |||||||||||||||    
T  21570479 ttgttgttcgtcgtcttgtgt 21570459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 427
Target Start/End: Original strand, 6173543 - 6173661
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||| |||||||||| |    
T  6173543 ccctcttcatctttttctctctatttcaatctaaataagtgattttcacatagatctagg--tttttttctttgtgatttcatcatcgaagtgtggtggt 6173640  T
Q  407 ttgttattcgtcgtcttgtgt 427  Q
    ||||| ||||| |||||||||    
T  6173641 ttgttgttcgttgtcttgtgt 6173661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 2808640 - 2808525
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||||| |||| || ||||||| |||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| |    
T  2808640 ccctcttcatctatttctctctatttcagtctaaataagtgattttcacatagatctagg----tttttctttgtgatttcatcatctaagtgtggtggt 2808545  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  2808544 ttgttgttcgtcgtcttgtg 2808525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 7015880 - 7015764
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||         | |||| |||||||||||||||||||||| |    
T  7015880 ccctcctaatctttttctctttatttcaatctaaataattgattttcacatagatttagg---ttttttccttgtgatttcatcatctaagtgtggtggt 7015784  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  7015783 ttgttgttcgtcgtcttgtg 7015764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 420
Target Start/End: Complemental strand, 32680746 - 32680640
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| |||||||||||||||||||||| ||||||     
T  32680746 tcatctttttctctctatttcaatctaaataagtgactttcacatagatctagg-ttttttttctttgtgatttcatcatctaagtgtggtggtttgttg 32680648  T
Q  413 ttcgtcgt 420  Q
    ||||||||    
T  32680647 ttcgtcgt 32680640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 426
Target Start/End: Original strand, 32913165 - 32913269
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtc 418  Q
    ||||| || ||||||||| |||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| |||||| ||||||    
T  32913165 ttttctctatatttcaatttaaataagtgattttcacatagatctaggtttttt---ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtc 32913261  T
Q  419 gtcttgtg 426  Q
    ||||||||    
T  32913262 gtcttgtg 32913269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 40626197 - 40626081
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| || |||||||| || |||||||||||||||||| |||||||||||||||||| |         |||||| |||||||||||||||||||||| |    
T  40626197 ccctcttcgtctttttctctctatttcaatctaaataagggattttcacatagatctacgtttttt---ctttgtgatttcatcatctaagtgtggtggt 40626101  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  40626100 ttgttgttcgtcgtcttgtg 40626081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 40660080 - 40659985
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  40660080 tatttcaatctaaataagtgattttcacatagatctag---attttttctttgtgatttcatcatctaagtgtggtgctttgttgttcgtcgtcttgtg 40659985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 41430939 - 41431056
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||| | ||| |||||||||||||         |||||| |||||||||||||||||||||| |    
T  41430939 ccctcttcatctttttctctatatttcaatctaaataagtcacttttacatagatctaggtgttttt--ctttgtgatttcatcatctaagtgtggtggt 41431036  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  41431037 ttgttgttcgtcgtcttgtg 41431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 3270392 - 3270282
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||  |||||     
T  3270392 tcatctttttctttttatttcaatctaaataagtgattttcacatagatctaggttttttt---tttgtgatttcatcatctaagtgtggtggcttgttg 3270296  T
Q  413 ttcgtcgtcttgtg 426  Q
    |||||||| |||||    
T  3270295 ttcgtcgttttgtg 3270282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 8971798 - 8971680
Alignment:
Q  307 ccctcctcatctttttcgct--ttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtg 404  Q
    ||||| ||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||         |||||| |||||||||||||||| |||||    
T  8971798 ccctcttcatctttttctctctttattttaatctaaataagtgattttcacatagatctagg---ttttttctttgtgatttcatcatctaagtatggtg 8971702  T
Q  405 atttgttattcgtcgtcttgtg 426  Q
     |||||| ||||||||||||||    
T  8971701 gtttgttgttcgtcgtcttgtg 8971680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 34598905 - 34599015
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||           ||||| |||||||||||||||||||||| ||||||     
T  34598905 tcatctttttctctctatttcaatctaaataagtgattttcacatagatctag---tttttttttttgtgatttcatcatctaagtgtggtggtttgttg 34599001  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||| ||||||||||    
T  34599002 ttcatcgtcttgtg 34599015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 8805784 - 8805894
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||| |||||| |||||||||||| |||||||||||||||||||| ||||||||         |||||| |||||||||||| ||||||||| ||||||     
T  8805784 tcatatttttctctttatttcaatttaaataagtgattttcacatggatctagg---ttttttctttgtgatttcatcatctgagtgtggtggtttgttg 8805880  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  8805881 ttcgtcgtcttgtg 8805894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 426
Target Start/End: Complemental strand, 9986491 - 9986395
Alignment:
Q  331 ttcaatctaaataagtgattttcacatagatctaggnnnnnnnnn-ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  9986491 ttcaatctaaataagtgattttcacatagatctaggtttattttttctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 9986395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 27949340 - 27949453
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnct-ttgtaatttcatcatctaagtgtggtgatttgtt 411  Q
    ||||| |||||||| | |||||||||||||||||||||||||||||||||||||         || |||  |||||||||||||||||||||| ||| ||    
T  27949340 tcatccttttcgctctgtttcaatctaaataagtgattttcacatagatctaggtttttttttctattgcgatttcatcatctaagtgtggtggtttatt 27949439  T
Q  412 attcgtcgtcttgt 425  Q
     |||||||||||||    
T  27949440 gttcgtcgtcttgt 27949453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 424
Target Start/End: Original strand, 22421659 - 22421761
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtc 418  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| |||||||||||||||||||||| |||||| ||||||    
T  22421659 ttttctctctatttcaatctaaataagtgactttcacatagatctagg---ttttttctttgtgatttcatcatctaagtgtggtggtttgttgttcgtc 22421755  T
Q  419 gtcttg 424  Q
     |||||    
T  22421756 atcttg 22421761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 26025573 - 26025463
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||||||||||         |||||| |||||||||| ||||||||||  ||||||     
T  26025573 tcatctttttctctctatttcaatctaaataagtggttttcacatagatctagg---ttttttctttgtgatttcatcatgtaagtgtggtagtttgttg 26025477  T
Q  413 ttcgtcgtcttgtg 426  Q
     |||||||||||||    
T  26025476 gtcgtcgtcttgtg 26025463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 31581888 - 31581831
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctag 365  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  31581888 cctcttcatctttttctctctatttcaatctaaataagtgattttcacatagatctag 31581831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 42949637 - 42949685
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42949637 tttttctctttatttcaatctaaataagtgattttcacatagatctagg 42949685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 425
Target Start/End: Original strand, 3725093 - 3725207
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatt 407  Q
    |||| ||||||||||| || ||||||||| |||||||||||||||||||||||||| |          |||||| |||||||| ||||||||||||| ||    
T  3725093 cctcttcatctttttctctctatttcaatataaataagtgattttcacatagatcttg---attttttctttgtgatttcatcgtctaagtgtggtggtt 3725189  T
Q  408 tgttattcgtcgtcttgt 425  Q
    |||| ||||| |||||||    
T  3725190 tgttgttcgttgtcttgt 3725207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 27477066 - 27477124
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctag 365  Q
    ||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  27477066 ccctcttcatctttttctctatatttcaatctaaataagtaattttcacatagatctag 27477124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 4228061 - 4228161
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttg 424  Q
    |||||||||||| |||||||||||||| |||||||||||| |         |||||| ||||||||||||||||||| || |||||| ||||||||||||    
T  4228061 ctttatttcaatataaataagtgatttacacatagatctatgtttttttt-ctttgtgatttcatcatctaagtgtgatggtttgttgttcgtcgtcttg 4228159  T
Q  425 tg 426  Q
    ||    
T  4228160 tg 4228161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 20047246 - 20047135
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || | ||||||||||||||||||| ||| |||||||| ||||         | |||| |||||||||||||||||||||| ||||||     
T  20047246 tcatctttttctctctttttcaatctaaataagtgacttttacatagatttaggttttttt--cattgtgatttcatcatctaagtgtggtggtttgttg 20047149  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  20047148 ttcgtcgtcttgtg 20047135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 423
Target Start/End: Complemental strand, 41712929 - 41712821
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||| ||||| || ||||| |||||||||||||||||||||||||||| ||||         || ||| ||||| |||||||||||||||| ||||||     
T  41712929 tcatcattttctctctattttaatctaaataagtgattttcacatagatttagg--tttttttctctgtgatttcctcatctaagtgtggtggtttgttg 41712832  T
Q  413 ttcgtcgtctt 423  Q
    |||||||||||    
T  41712831 ttcgtcgtctt 41712821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 39642023 - 39641970
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||| || ||||||||| ||||||| |||||||||||||||||||||    
T  39642023 tcatctttttctctctatttcaatttaaataaatgattttcacatagatctagg 39641970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 426
Target Start/End: Original strand, 25087022 - 25087065
Alignment:
Q  383 atttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  25087022 atttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 25087065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 31580685 - 31580642
Alignment:
Q  383 atttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  31580685 atttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 31580642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 3269251 - 3269164
Alignment:
Q  338 taaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||  ||||| |||||||| |||||    
T  3269251 taaataagtgattttcacatagatctaggttttttttt-tttgtgatttcatcatctaagtgtggtggcttgttgttcgtcgttttgtg 3269164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 3269810 - 3269723
Alignment:
Q  338 taaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||  ||||| |||||||| |||||    
T  3269810 taaataagtgattttcacatagatctaggttttttttt-tttgtgatttcatcatctaagtgtggtggcttgttgttcgtcgttttgtg 3269723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 3308848 - 3308881
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    ||||||||||||||||||||||||||||||||||    
T  3308848 ctttatttcaatctaaataagtgattttcacata 3308881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 18694970 - 18695014
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacatagatc 362  Q
    |||||| || ||||||||||||||||||||||||| |||||||||    
T  18694970 tttttctctctatttcaatctaaataagtgatttttacatagatc 18695014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 23933818 - 23933778
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  23933818 tttttccctttatttcaatctaaataagtgactttcacata 23933778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 10237403 - 10237370
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  10237403 ctttctttcaatctaaataagtgattttcacata 10237370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 39310984 - 39310935
Alignment:
Q  377 tttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||| |||||||||||||||||||||| | |||| ||| ||||||||||    
T  39310984 tttgtgatttcatcatctaagtgtggtgttgtgttgttcttcgtcttgtg 39310935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 25064148 - 25064260
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||     
T  25064148 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg-ttttttttctttgtaatttcatcatctaagtgtggtgatttgttg 25064246  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  25064247 ttcgtcgtcttgtg 25064260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 7876209 - 7876097
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||||||||||||||     
T  7876209 tcatctttttctctttatttcaatctaaataagtgattttcacatagatcta-gattttttttctttgcaatttcatcatctaagtgtggtgatttgttg 7876111  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  7876110 ttcgtcgtcttgtg 7876097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 7881267 - 7881155
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||||||||||||||     
T  7881267 tcatctttttctctttatttcaatctaaataagtgattttcacatagatcta-gattttttttctttgcaatttcatcatctaagtgtggtgatttgttg 7881169  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  7881168 ttcgtcgtcttgtg 7881155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 8496872 - 8496991
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||| ||||||||| |||||| ||||||    
T  8496872 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggtttttttttctttgtagtttcatcatttaagtgcggtgat 8496971  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| |||||| |||||||    
T  8496972 ttgttgttcgtcatcttgtg 8496991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 8196571 - 8196460
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||| ||||||||||| ||||||     
T  8196571 tcatctttttctctctatttcaatctaaataagtgattttcacatagatctagg--tttttttctttgtgatttcatcatataagtgtggtggtttgttg 8196474  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  8196473 ttcgtcgtcttgtg 8196460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 4468466 - 4468582
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||| ||| || ||||||||||||||||||||||||||| |||||||||||         |||||| |||||||||| ||||||||||| |    
T  4468466 ccctcttcatcttgttctctctatttcaatctaaataagtgattttcatatagatctagg---ttttttctttgtgatttcatcatataagtgtggtggt 4468562  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||||||||||||||||||    
T  4468563 ttgttattcgtcgtcttgtg 4468582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 17237454 - 17237338
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||||         |||||| |||||| ||||||||||||||| |    
T  17237454 ccctcttcatctttttctctatatttcaatctaaataagttattttcacatagatctagg---ttttttctttgtgatttcagcatctaagtgtggtggt 17237358  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  17237357 ttgttgttcgtcgtcttgtg 17237338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 17334688 - 17334802
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatct-aggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtt 411  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| ||          |||||||||||||| |||||||||||||||||||||    
T  17334688 tcatctttttctgtttatttcaatctaaataagtgattttcacatagatctaagttttttttttctttgtaatttcataatctaagtgtggtgatttgtt 17334787  T
Q  412 attcgtcgtcttgtg 426  Q
     | ||||||||||||    
T  17334788 gtacgtcgtcttgtg 17334802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 23947481 - 23947371
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||| ||||||     
T  23947481 tcatcgttttctctctatttcaatctaaataagtgattttcacatagatctagg---ttttttctttttgatttcatcatctaagtgtggtggtttgttg 23947385  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  23947384 ttcgtcgtcttgtg 23947371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 12652847 - 12652968
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctag--gnnnnnnnnnctttgtaatttcatcatctaagtgtggtg 404  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||            |||||| ||||||||||||||||||||||    
T  12652847 ccctcttcatctttttctctctatttcaatctaaataagtgattttcacatagatctagattttttttttcctttgtgatttcatcatctaagtgtggtg 12652946  T
Q  405 atttgttattcgtcgtcttgtg 426  Q
     |||||| ||| ||||||||||    
T  12652947 gtttgttgttcatcgtcttgtg 12652968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 33740748 - 33740631
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||         |||||| |||||||||||||||||||| | |    
T  33740748 ccctcttcatctttttctctctatttcaatctaaataagtgattttcacatagatttagg--tttttttctttgtgatttcatcatctaagtgtggcggt 33740651  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| |||||||| |||||    
T  33740650 ttgttgttcgtcgttttgtg 33740631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 8028282 - 8028171
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||||| |         |||| | |||||||||||||||||||||| ||||||     
T  8028282 tcatctttttctctctgtttcaatctaaataagtgattttcacatagatctaag--tttttttctttatgatttcatcatctaagtgtggtggtttgttg 8028185  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  8028184 ttcgtcgtcttgtg 8028171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 16419071 - 16419182
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||||  |         |||||| |||||||||||||||||||||| ||||||     
T  16419071 tcatctttttctctctatttcaatctaaataagtgactttcacatagatctttg--tttttttctttgtgatttcatcatctaagtgtggtggtttgttg 16419168  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  16419169 ttcgtcgtcttgtg 16419182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 33109747 - 33109800
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33109747 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg 33109800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 12165769 - 12165864
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||||||||||||||| ||||         ||||||  ||| ||||||||||||||||| |||||| ||||||||||||||    
T  12165769 tatttcaatctaaataagtgattttcacatagatttagg---ttttttctttgtggttttatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 12165864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 426
Target Start/End: Original strand, 35001506 - 35001614
Alignment:
Q  316 tctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattc 415  Q
    |||||||| || ||||| ||||||||||||||| ||| ||||||||||| |         |||||| |||||||||||||||||||||| |||||| |||    
T  35001506 tctttttctctctattttaatctaaataagtgacttttacatagatctatgttttttt--ctttgtgatttcatcatctaagtgtggtggtttgttgttc 35001603  T
Q  416 gtcgtcttgtg 426  Q
    |||||||||||    
T  35001604 gtcgtcttgtg 35001614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 4088388 - 4088484
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||| |||||||||||||||||||||||||||||||||          |||| | |||||||||||||||||||||| |||||| ||| ||||||||||    
T  4088388 tattacaatctaaataagtgattttcacatagatctag--ttttttttctttttgatttcatcatctaagtgtggtggtttgttgttcatcgtcttgtg 4088484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 4984670 - 4984620
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  4984670 ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 4984620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 4984736 - 4984697
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  4984736 ttttctctctatttcaatctaaataagtgattttcacata 4984697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 9508876 - 9508829
Alignment:
Q  317 ctttttcgctttatttcaatctaaataagtgattttcacatagatcta 364  Q
    |||||||  |||| |||||||||||||||||||||||||||| |||||    
T  9508876 ctttttctttttaattcaatctaaataagtgattttcacatatatcta 9508829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 10228586 - 10228703
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||||||| || || || |||||||||||||||||| ||| ||||| ||||| |         |||||| |||||||||| |||||||| || |    
T  10228586 ccctcttcatctttctctctctacttcaatctaaataagtgacttttacatatatctatgttttttt--ctttgtgatttcatcatttaagtgtgatggt 10228683  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  10228684 ttgttgttcgtcgtcttgtg 10228703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 7027815 - 7027857
Alignment:
Q  383 atttcatcatctaagtgtggtgatttgttattcgtcgtcttgt 425  Q
    |||||||||| ||||||||||| |||||| |||||||||||||    
T  7027815 atttcatcatttaagtgtggtggtttgttgttcgtcgtcttgt 7027857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 13436705 - 13436751
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacatagatcta 364  Q
    |||||| || ||||||||| ||||||||||||||||||||| |||||    
T  13436705 tttttctctctatttcaatttaaataagtgattttcacataaatcta 13436751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 25337499 - 25337536
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  25337499 atttcaatctaaataaatgattttcacataaatctagg 25337536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 25398479 - 25398532
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||  |||| | ||||||||||||||||||||| || ||||||||||    
T  25398479 tcatctttttatctttgtctcaatctaaataagtgattttaacgtagatctagg 25398532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 33543783 - 33543734
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtga-ttttcacatagat 361  Q
    ||||||||||| || ||||||||||||||||||| | |||||||||||||    
T  33543783 tcatctttttctctatatttcaatctaaataagtaatttttcacatagat 33543734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 28981070 - 28981110
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| |||| |||||||||||||||||||||| ||||||    
T  28981070 tttttccctttctttcaatctaaataagtgatttccacata 28981110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 307 - 427
Target Start/End: Original strand, 32607372 - 32607491
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  32607372 ccctcttcatcattttctctttatttcaatctaaataagtgattttcacatagatctagg-ttttttttctttgtaatttcatcatctaagtgtggtgat 32607470  T
Q  407 ttgttattcgtcgtcttgtgt 427  Q
    ||||| |||||||||||||||    
T  32607471 ttgttgttcgtcgtcttgtgt 32607491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 44907569 - 44907451
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  44907569 ccctcttcatctttttctctttatttcaatctaaacaagtgattttcacatagatctagg-ttttttttctttgtaatttcatcatctaagtgtggtgat 44907471  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  44907470 ttgttgttcgtcgtcttgtg 44907451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 35499371 - 35499251
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg-nnnnnnnnnctttgtaatttcatcatctaagtgtggtga 405  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||    
T  35499371 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggttttttttttctttgtaatttcattatctaagtgtggtga 35499272  T
Q  406 tttgttattcgtcgtcttgtg 426  Q
    |||||| ||||||||||||||    
T  35499271 tttgttgttcgtcgtcttgtg 35499251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 36906032 - 36906143
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||||||||||||     
T  36906032 tcatctttttctctttatttcaatataaataagtgattttcacatagatttaggttttttt--ctttgtaatttcatcatctaagtgtggtgatttgttg 36906129  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  36906130 ttcgtcgtcttgtg 36906143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 313 - 440
Target Start/End: Original strand, 4172477 - 4172602
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| ||||||     
T  4172477 tcatctttttctctctatttcaatctaaataagtgattttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtggtttgttt 4172574  T
Q  413 ttcgtcgtcttgtgttttgttgtttcat 440  Q
    ||||||||||||||   |||||||||||    
T  4172575 ttcgtcgtcttgtgcggtgttgtttcat 4172602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 420
Target Start/End: Original strand, 14464418 - 14464525
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |         |||||| |||||||| ||||||||||||||||||| |    
T  14464418 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctaagtttttttttctttgtgatttcatcttctaagtgtggtgatttgtca 14464517  T
Q  413 ttcgtcgt 420  Q
    ||| ||||    
T  14464518 ttcatcgt 14464525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 17237713 - 17237826
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||||| |||| || |||||||||||||||||||||||||||||||||| ||||         |||||| |||||||||||||||||||||| ||||||     
T  17237713 tcatctgtttctctctatttcaatctaaataagtgattttcacatagatttaggtttttttttctttgtgatttcatcatctaagtgtggtggtttgttg 17237812  T
Q  413 ttcgtcgtcttgtg 426  Q
    || |||||||||||    
T  17237813 tttgtcgtcttgtg 17237826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 29503373 - 29503483
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||| |||||| || ||||||||||||||||| |||||||||||||||||||||         |||||| |||||||||||||||||||||| ||||||     
T  29503373 tcatatttttctctatatttcaatctaaataattgattttcacatagatctaggtttttt---ctttgtgatttcatcatctaagtgtggtggtttgttg 29503469  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  29503470 ttcgtcgtcttgtg 29503483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 307 - 443
Target Start/End: Complemental strand, 38855207 - 38855072
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||| |         |||||| ||||||||||||||||||| || |    
T  38855207 ccctcttcatctttttctctctatatcaatctaaataagtgattttcacatagatcta-gattttttttctttgtgatttcatcatctaagtgtgatggt 38855109  T
Q  407 ttgttattcgtcgtcttgtgttttgttgtttcatctc 443  Q
    ||||| ||||| |||||||||   |||||||||||||    
T  38855108 ttgttgttcgttgtcttgtgtggcgttgtttcatctc 38855072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 426
Target Start/End: Complemental strand, 25631690 - 25631579
Alignment:
Q  314 catctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttat 413  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| |||||| |    
T  25631690 catctttttctctctatttcaatctaaataagtgattttcacatagatctagg-ttttttttctttgtgatttcatcatctaagtgtggtggtttgttgt 25631592  T
Q  414 tcgtcgtcttgtg 426  Q
    ||  |||||||||    
T  25631591 tctccgtcttgtg 25631579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 422
Target Start/End: Original strand, 2342396 - 2342509
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||           |||||| |||||||||||||||||||||| |    
T  2342396 ccctcttcatctttttctctctatttcaatctaaataagtgattttcacatatatcta--tatttttttctttgtgatttcatcatctaagtgtggtggt 2342493  T
Q  407 ttgttattcgtcgtct 422  Q
    ||||||||||| ||||    
T  2342494 ttgttattcgttgtct 2342509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 25162347 - 25162457
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| |||||||||||||||||||||  ||||||     
T  25162347 tcatctttttctctctatttcaatctaaataagtga-tttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtagtttgttg 25162443  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  25162444 ttcgtcgtcttgtg 25162457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 12116004 - 12116119
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg-nnnnnnnnnctttgtaatttcatcatctaagtgtggtga-tttgt 410  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |||||||||          |||||||||||||| ||||||||||||||| |||||    
T  12116004 tcatcttttcctctttatttcaatctaaataagtgattttcacaaagatctaggttttttttttctttgtaatttcattatctaagtgtggtgattttgt 12116103  T
Q  411 tattcgtcgtcttgtg 426  Q
    | ||||| ||||||||    
T  12116104 tgttcgttgtcttgtg 12116119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 50611587 - 50611473
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||         |||||| ||||||||||||||||||| || |    
T  50611587 ccctcttcatctttttctctatatttcaatctaaataagtgattttcatatagatctagg--tttttttctttgtgatttcatcatctaagtgtgatggt 50611490  T
Q  407 ttgttattcgtcgtctt 423  Q
    || || |||||||||||    
T  50611489 ttattgttcgtcgtctt 50611473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 46934547 - 46934663
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||||||| || || ||||||||||||||||||||||||||||||||||| |||         |||  | |||||||||||||||||||||| |    
T  46934547 ccctcttcatctttctctctctatttcaatctaaataagtgattttcacatagatccagg---ttttttcttgttgatttcatcatctaagtgtggtggt 46934643  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  46934644 ttgttgttcgtcgtcttgtg 46934663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 4178475 - 4178586
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||||||||| ||| ||||||          |||||| |||||||||||||||||||||| ||||||     
T  4178475 tcatctttttctctctatttcaatctaaataagtgattttcagataaatctag--ctttttttctttgtgatttcatcatctaagtgtggtggtttgttt 4178572  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||| ||||||||||    
T  4178573 ttcatcgtcttgtg 4178586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 423
Target Start/End: Complemental strand, 38440739 - 38440634
Alignment:
Q  315 atctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttatt 414  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||         |||| | ||||||| ||| |||||||||| |||||| ||    
T  38440739 atctttttctctctatttcaatctaaataagtgattttcacatagatctagg---ttttttctttttgatttcatgatcaaagtgtggtggtttgttgtt 38440643  T
Q  415 cgtcgtctt 423  Q
    |||||||||    
T  38440642 cgtcgtctt 38440634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 39917560 - 39917451
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||| |||||| || || ||||||||||||||||||||||||||||||||||||         | |||| |||||||||||||||||||||| ||||||     
T  39917560 tcatatttttctctctaattcaatctaaataagtgattttcacatagatctagg---ttttttccttgtgatttcatcatctaagtgtggtggtttgttg 39917464  T
Q  413 ttcgtcgtcttgt 425  Q
    ||||| |||||||    
T  39917463 ttcgttgtcttgt 39917451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 3850625 - 3850566
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||||    
T  3850625 ccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctagg 3850566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 426
Target Start/End: Complemental strand, 30648860 - 30648772
Alignment:
Q  336 tctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||||||| ||||||||||||||||          |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  30648860 tctaaataagtgactttcacatagatctag--ttttttttctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 30648772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 49552393 - 49552277
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||| ||||  || ||||||||||||||||||||| ||||||||  |||||||         |||||| |||||||||||||| ||||||| |    
T  49552393 ccctcttcatcattttttctctatttcaatctaaataagtgaatttcacattaatctaggtttttt---ctttgtgatttcatcatctaaatgtggtggt 49552297  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  49552296 ttgttgttcgtcgtcttgtg 49552277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 22802927 - 22802986
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    |||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||    
T  22802927 cctcttcatctttttctctctatttcaatctaaataagtgatttttcacgtagatctagg 22802986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 31794005 - 31794040
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatct 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  31794005 tatttcaatctaaataagtgattttcacatagatct 31794040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 51202385 - 51202307
Alignment:
Q  348 attttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||         |||||| |||||||||||||||||||||| |||||| || |||||||||||    
T  51202385 attttcacatagatctaggtttttttttctttgtgatttcatcatctaagtgtggtggtttgttgtttgtcgtcttgtg 51202307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 42719497 - 42719538
Alignment:
Q  385 ttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  42719497 ttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 42719538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 46178481 - 46178541
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtg-attttcacatagatctagg 366  Q
    ||||| ||||||||||| || || |||||||||||||||||  ||||||||||||||||||    
T  46178481 ccctcttcatctttttctctctaattcaatctaaataagtgctttttcacatagatctagg 46178541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 3849015 - 3848972
Alignment:
Q  383 atttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||    
T  3849015 atttcatcatgtaagtgtggtggtttgttgttcgtcgtcttgtg 3848972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 21488022 - 21488073
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatcta 364  Q
    ||||||||||| ||  |||||||||||||||||||| |||||| ||||||||    
T  21488022 tcatctttttctctccatttcaatctaaataagtgactttcacgtagatcta 21488073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 365
Target Start/End: Original strand, 33579772 - 33579807
Alignment:
Q  330 tttcaatctaaataagtgattttcacatagatctag 365  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33579772 tttcaatctaaataagtgattttcacatatatctag 33579807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 358
Target Start/End: Original strand, 7546516 - 7546544
Alignment:
Q  330 tttcaatctaaataagtgattttcacata 358  Q
    |||||||||||||||||||||||||||||    
T  7546516 tttcaatctaaataagtgattttcacata 7546544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 42719436 - 42719484
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||| || ||||||||| |||||||||||||||||  ||||||||||    
T  42719436 tttttctctctatttcaatttaaataagtgattttcatgtagatctagg 42719484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 51923629 - 51923661
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacat 357  Q
    |||| ||||||||||||||||||||||||||||    
T  51923629 ctttctttcaatctaaataagtgattttcacat 51923661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 30371634 - 30371752
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  30371634 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg-ttttttttctttgtaatttcatcatctaagtgtggtgat 30371732  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| |||||| |||||||    
T  30371733 ttgttgttcgtcatcttgtg 30371752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 26578165 - 26578278
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||| ||||||||||     
T  26578165 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggtttttttttctttgtaatttcatcatctaaatgtagtgatttgttg 26578264  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  26578265 ttcgtcgtcttgtg 26578278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 7246868 - 7246985
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  7246868 ccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtgat 7246965  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  7246966 ttgttgttcgtcgtcttgtg 7246985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 424
Target Start/End: Complemental strand, 2058008 - 2057893
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||| |    
T  2058008 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg--tttttttctttatgatttcatcatctaagtgtggtggt 2057911  T
Q  407 ttgttattcgtcgtcttg 424  Q
    ||||| ||||||||||||    
T  2057910 ttgttgttcgtcgtcttg 2057893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 7241692 - 7241809
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||||         |||||| |||||||||||||| |||||||||    
T  7241692 ccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctagg--tttttttctttgtgatttcatcatctaattgtggtgat 7241789  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  7241790 ttgttgttcgtcgtcttgtg 7241809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 18677636 - 18677518
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| |    
T  18677636 ccctcttcatctttttctctctattttaatctaaataagtgattttcacatagatctagg-ttttttttctttgtgatttcatcatctaagtgtggtggt 18677538  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  18677537 ttgttgttcgtcgtcttgtg 18677518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 27267030 - 27266912
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||| |||||| || |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| |    
T  27267030 ccctcttcatatttttctctctatttcaatctaaataagtgattttcacatagatctagg-ttttttttctttgtgatttcatcatctaagtgtggtggt 27266932  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  27266931 ttgttgttcgtcgtcttgtg 27266912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 7150505 - 7150388
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||| |         ||||||  ||||||||||||||||||||| |    
T  7150505 ccctcttcatctttttctctctatttcaatctaaataagtgactttcacatagatctaag--tttttttctttgtgctttcatcatctaagtgtggtggt 7150408  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  7150407 ttgttgttcgtcgtcttgtg 7150388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 10649363 - 10649422
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10649363 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg 10649422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 426
Target Start/End: Original strand, 30298130 - 30298234
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtc 418  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||| |||||| ||||||    
T  30298130 ttttctctatatttcaatctaaataagtgattttcacatagatctagg---ttttttctttatgatttcatcatctaagtgtggtggtttgttgttcgtc 30298226  T
Q  419 gtcttgtg 426  Q
    ||||||||    
T  30298227 gtcttgtg 30298234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 423
Target Start/End: Complemental strand, 43261981 - 43261875
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||||||||         |||||| |||| ||||||||||||||||| ||||||     
T  43261981 tcatctttttatctctatttcaatctaaataagtgattttcacatagatctagg----ttttcctttgtgattttatcatctaagtgtggtggtttgttg 43261886  T
Q  413 ttcgtcgtctt 423  Q
    |||||||||||    
T  43261885 ttcgtcgtctt 43261875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 781305 - 781415
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||||||||         |||||| |||||||||||||||| ||||| ||||||     
T  781305 tcatctttttctctatatttcaatctaaataagtgattttcagatagatctagg---gtttttctttgtgatttcatcatctaagtatggtggtttgttg 781401  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||| ||||    
T  781402 ttcgtcgtcatgtg 781415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 19281108 - 19280998
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||| ||||||| | |||||||         |||||| |||||||||||||||||||||| ||||||     
T  19281108 tcatctttttctctctatttcaatctaaataagtgactttcacacatatctaggtttttt---ctttgtgatttcatcatctaagtgtggtggtttgttg 19281012  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  19281011 ttcgtcgtcttgtg 19280998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 21060445 - 21060335
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| ||||         ||| || || ||||||||||||||||||| ||||||     
T  21060445 tcatctttttctctatatttcaatctaaataagtgattttcacatagatgtagg---ttttttcttcgtgatgtcatcatctaagtgtggtggtttgttg 21060349  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  21060348 ttcgtcgtcttgtg 21060335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 426
Target Start/End: Original strand, 16981201 - 16981316
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatt 407  Q
    |||| |||| |||||| || |||||||||||||||||||||||| |||||| |||||||         |||||| ||||||||||||||||| |||| ||    
T  16981201 cctcttcatatttttctctctatttcaatctaaataagtgatttacacatatatctagg---ttttttctttgtgatttcatcatctaagtgcggtggtt 16981297  T
Q  408 tgttattcgtcgtcttgtg 426  Q
    |||| ||||||||||||||    
T  16981298 tgttgttcgtcgtcttgtg 16981316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 42579811 - 42579914
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnn-----ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtct 422  Q
    |||||||||||||||||||||||||||||||||| ||||              |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  42579811 tatttcaatctaaataagtgattttcacatagatttaggtttttttgttttttctttgtgatttcatcatctaagtgtggtgatttgttgttcgtcgtct 42579910  T
Q  423 tgtg 426  Q
    ||||    
T  42579911 tgtg 42579914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 19259974 - 19259864
Alignment:
Q  316 tctttttcgctttatttcaatctaaataagtgatttt-cacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttatt 414  Q
    |||||||| || ||||||||||||||||||||||||| |||||||||||| |         || ||| |||||||||||||||||||||| |||||| ||    
T  19259974 tctttttctctctatttcaatctaaataagtgatttttcacatagatctaagtttttttt-ctctgtgatttcatcatctaagtgtggtggtttgttgtt 19259876  T
Q  415 cgtcgtcttgtg 426  Q
    ||||||||||||    
T  19259875 cgtcgtcttgtg 19259864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 27751857 - 27751945
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcg 419  Q
    ||||||||| |||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| |||||| |||||||    
T  27751857 tatttcaatataaataagtgattttcacatagatctagg---ttttttctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcg 27751945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 36344659 - 36344544
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||| |||||||||| |||||| |         |||||| |||| ||||||||||||||||| |    
T  36344659 ccctcttcatctttttctctatatttcaatctaaataagttattttcacatggatctaag---ttttttctttgtgattt-atcatctaagtgtggtggt 36344564  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  36344563 ttgttgttcgtcgtcttgtg 36344544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 3271505 - 3271455
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  3271505 ctttgtgatttcatcatctaagtgtggtggtttgttattcgtcgtcttgtg 3271455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 20257855 - 20257805
Alignment:
Q  316 tctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  20257855 tctttttctctctatttcaatctaaataagtgattttcacatagatctagg 20257805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 28235495 - 28235611
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||||||||||  | |||||| |||||||||||||||||||||||||||||||          |||||| ||||||||||||||||||| || |    
T  28235495 ccctcttcatctttttctttctatttcgatctaaataagtgattttcacatagatctag---attttttctttgtgatttcatcatctaagtgtgatggt 28235591  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| |  |||||||||||    
T  28235592 ttgttgtctgtcgtcttgtg 28235611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 426
Target Start/End: Original strand, 34881631 - 34881744
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctag------gnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||                |||||| |||||||||||||||||||||| ||||||     
T  34881631 ttttctctctatttcaatctaaataagtgattttcacatagatctagtttttttcttttttttctttgtgatttcatcatctaagtgtggtggtttgttg 34881730  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  34881731 ttcgtcgtcttgtg 34881744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 7887107 - 7886992
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| || |||||| | || ||||| ||||||||||||||||||||||||| ||||| |         |||| | |||||||||||||||||||||| |    
T  7887107 ccctcttcgtcttttcctctctattttaatctaaataagtgattttcacataaatctatgtttttt---ctttttgatttcatcatctaagtgtggtggt 7887011  T
Q  407 ttgttattcgtcgtcttgt 425  Q
    ||||| |||||||||||||    
T  7887010 ttgttgttcgtcgtcttgt 7886992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 41184543 - 41184493
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  41184543 ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 41184493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 43148707 - 43148757
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  43148707 ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 43148757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 35475485 - 35475448
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctag 365  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35475485 tatttcaatctaaataagtgattttcacatagatctag 35475448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 1697015 - 1696979
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatcta 364  Q
    |||||||||||||||||||||||||||||||||||||    
T  1697015 tatttcaatctaaataagtgattttcacatagatcta 1696979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 14211118 - 14211162
Alignment:
Q  314 catctttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  14211118 catctttttccctttctttcaatctaaataagtgattttcacata 14211162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 42886395 - 42886504
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||| ||||| || |||||||||| ||||||||| ||||||||||||| ||||         ||| || |||||||||||| ||||||||| | ||||     
T  42886395 tcatccttttctctctatttcaatcaaaataagtgcttttcacatagatttagg----tttttcttcgtgatttcatcatctgagtgtggtggtgtgttg 42886490  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  42886491 ttcgtcgtcttgtg 42886504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 10148730 - 10148766
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctag 365  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10148730 attttaatctaaataagtgattttcacatagatctag 10148766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 27576513 - 27576461
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctag 365  Q
    ||||| ||||| || ||||||||| |||||||||||| |||||||||||||||    
T  27576513 tcatccttttctctctatttcaatgtaaataagtgatattcacatagatctag 27576461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 11767723 - 11767762
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgatttt 352  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  11767723 tcatctttttctctatatttcaatctaaataagtgatttt 11767762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 3271555 - 3271521
Alignment:
Q  330 tttcaatctaaataagtgattttcacatagatcta 364  Q
    |||||||||||||||||||||||||||||| ||||    
T  3271555 tttcaatctaaataagtgattttcacataggtcta 3271521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 31802625 - 31802587
Alignment:
Q  326 tttatttcaatctaaataagtgattttcacatagatcta 364  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  31802625 tttatttcaatctaaataagggattttcacgtagatcta 31802587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 2979502 - 2979469
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  2979502 ctttctttcaatctaaataagtgattttcacata 2979469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 7613220 - 7613167
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||| ||||| || | |||||||||||||||||| |||||| |||||||||||    
T  7613220 tcatccttttctctctgtttcaatctaaataagtgtttttcatatagatctagg 7613167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 28541102 - 28541069
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  28541102 ctttctttcaatctaaataagtgattttcacata 28541069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 39567194 - 39567227
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  39567194 ctttctttcaatctaaataagtgattttcacata 39567227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 1582269 - 1582233
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctag 365  Q
    |||| |||||||||||||||||||||| |||||||||    
T  1582269 attttaatctaaataagtgattttcacgtagatctag 1582233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 1602546 - 1602582
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctag 365  Q
    |||| |||||||||||||||||||||| |||||||||    
T  1602546 attttaatctaaataagtgattttcacgtagatctag 1602582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 10649623 - 10649670
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| ||||||||||||||||||||   |||||| ||||||||||||||    
T  10649623 ctttgtgatttcatcatctaagtgtgg---tttgttgttcgtcgtcttgtg 10649670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 35631839 - 35631803
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatcta 364  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  35631839 tatttcaatctaaataagtgatttttacatatatcta 35631803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 2655789 - 2655901
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||     
T  2655789 tcatctttttctctttatttcaatctaaataagtgattttcacatagatcta-gattttttttctttgtaatttcatcatctaagtgtggtgatttgttg 2655887  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  2655888 ttcgtcgtcttgtg 2655901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 4808878 - 4808995
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  4808878 ccctcttcatctttttttctttatttcaatgtaaataagtgattttcacatagatctag--ctttttttctttgtaatttcatcatctaagtgtggtgat 4808975  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  4808976 ttgttgttcgtcgtcttgtg 4808995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 9498772 - 9498652
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg-nnnnnnnnnctttgtaatttcatcatctaagtgtggtga 405  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| ||||          ||||||||||||||||||||||||||||||    
T  9498772 ccctcttcatctttttatctttatttcaatctaaataagtgattttcacatagatttaggttttttttttctttgtaatttcatcatctaagtgtggtga 9498673  T
Q  406 tttgttattcgtcgtcttgtg 426  Q
    |||||| ||||| ||||||||    
T  9498672 tttgttgttcgttgtcttgtg 9498652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 14907088 - 14906976
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| || ||||||||||||||     
T  14907088 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg-ttctttttctttgtaatttcatcatcaaaatgtggtgatttgttg 14906990  T
Q  413 ttcgtcgtcttgtg 426  Q
    || |||||||||||    
T  14906989 tttgtcgtcttgtg 14906976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 9619528 - 9619410
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |         | |||||||||||||||||| ||||||||||    
T  9619528 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagattta-gattttttttcattgtaatttcatcatctacgtgtggtgat 9619430  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  9619429 ttgttgttcgtcgtcttgtg 9619410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 43890295 - 43890177
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||| |||||||    
T  43890295 ccctcttcatctttttctctttaattcaatctaaataagtgattttgacatagatctag-attttttttctttgtaatttcatcatctaagtatggtgat 43890197  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  43890196 ttgttgttcgtcgtcttgtg 43890177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 443
Target Start/End: Original strand, 44577951 - 44578084
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatt 407  Q
    |||| ||||||||||| || ||||||||||||| |||||||||| ||||||||||||||         ||||||||||||||||||||||||||||| ||    
T  44577951 cctcttcatctttttctctctatttcaatctaactaagtgatttacacatagatctaggttttttt--ctttgtaatttcatcatctaagtgtggtggtt 44578048  T
Q  408 tgttattcgtcgtcttgtgttttgttgtttcatctc 443  Q
    |||| ||||||||||||||    |||||||||||||    
T  44578049 tgttgttcgtcgtcttgtgcggcgttgtttcatctc 44578084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 11464102 - 11464202
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttg 424  Q
    |||||||||||| | ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11464102 ctttatttcaatttgaataagtgattttcacatagatctag-attttttttctttgtaatttcatcatctaagtgtggtgatttgttgttcgtcgtcttg 11464200  T
Q  425 tg 426  Q
    ||    
T  11464201 tg 11464202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 35580378 - 35580488
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||||         ||| || |||||||||||||||||||||| ||||||     
T  35580378 tcatctttttctctctatttcaatttaaataagtgattttcacatagatctagg---ttttttcttcgtgatttcatcatctaagtgtggtggtttgttg 35580474  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  35580475 ttcgtcgtcttgtg 35580488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 11725596 - 11725712
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||         |||| | |||||||||||||||||||||| |    
T  11725596 ccctcttcgtctttttctctttatttcaatctaaataagtgtttttcacatagatctagg---ttttttctttttgatttcatcatctaagtgtggtggt 11725692  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||| ||||||||||    
T  11725693 ttgttgttcatcgtcttgtg 11725712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 33895995 - 33896113
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||| ||||||||||||||| |||||||||||||||||         |||||| |||||||||||||||||||||| |    
T  33895995 ccctcttcatctttttctctctatttaaatctaaataagtgactttcacatagatctagg-ttttttttctttgtgatttcatcatctaagtgtggtggt 33896093  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| |||||| |||||||    
T  33896094 ttgttgttcgtcttcttgtg 33896113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 42448198 - 42448080
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || |||||||||||||||||||||||| || |||||||||||         |||||| |||||||||||||||||||| | |    
T  42448198 ccctcttcatctttttctctctatttcaatctaaataagtgatttacatatagatctagg-ttttgtttctttgtgatttcatcatctaagtgtggaggt 42448100  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  42448099 ttgttgttcgtcgtcttgtg 42448080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 11196825 - 11196920
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||| |||||| ||||||||||||||    
T  11196825 tatttcaatctaaataagtgattttcacatagatctagg---ttttttctttttgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 11196920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 19876132 - 19876242
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||||| |||         |||||| |||||||||||||||||| ||| ||||||     
T  19876132 tcatctttttctcaatatttcaatctaaataagtgattttcacatagatcaagg---ttttttctttgtgatttcatcatctaagtgtagtggtttgttg 19876228  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  19876229 ttcgtcgtcttgtg 19876242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 44100102 - 44099987
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||| |         |||||| |||| ||||||||||||||||| |    
T  44100102 ccctcttcatctttttctctatatttcaatctaaataagttattttcacatagatctaag---ttttttctttgtgattt-atcatctaagtgtggtggt 44100007  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  44100006 ttgttgttcgtcgtcttgtg 44099987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 34611739 - 34611835
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||| ||||||||||||||||||||||| |||||||         |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  34611739 tatttcagtctaaataagtgattttcacataaatctaggttttttt--ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 34611835  T

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Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 37566028 - 37565932
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||||||||||| |||||||||||||||| ||||         |||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  37566028 tatttcaatctaaataattgattttcacatagatttaggttttttt--ctttgagatttcatcatctaagtgtggtggtttgttattcgtcgtcttgtg 37565932  T

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Target: chr8; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 426
Target Start/End: Complemental strand, 43192503 - 43192399
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtc 418  Q
    ||||| || |||||||||||||||||||| |||| |||||||||||||         ||| || |||||||||||||||||||||| |||||| ||||||    
T  43192503 ttttctctctatttcaatctaaataagtggtttttacatagatctaggtttttt---cttcgtgatttcatcatctaagtgtggtggtttgttgttcgtc 43192407  T
Q  419 gtcttgtg 426  Q
    ||||||||    
T  43192406 gtcttgtg 43192399  T

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Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 9072631 - 9072749
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||| ||||||||||| ||||||||| ||||| |         |||||| |||||||||||||||||||||| |    
T  9072631 ccctcttcatctttttctctctatttcaatttaaataagtgactttcacataaatcta-gattttttttctttgtgatttcatcatctaagtgtggtggt 9072729  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||| || |||||||    
T  9072730 ttgttgttcttcatcttgtg 9072749  T

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Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 29777200 - 29777250
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  29777200 ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 29777250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 32724647 - 32724601
Alignment:
Q  319 ttttcgctttatttcaatctaaataagtgattttcacatagatctag 365  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||    
T  32724647 ttttctctctatttcaatctaaataagtgattttcacatagatctag 32724601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 15597314 - 15597277
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15597314 atttcaatctaaataagtgattttcacatagatctagg 15597277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 17949161 - 17949217
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatct 363  Q
    ||||| ||| ||||||| || |||||||||||||||||| |||||||||||||||||    
T  17949161 ccctcttcacctttttctctctatttcaatctaaataagcgattttcacatagatct 17949217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 366
Target Start/End: Original strand, 33298794 - 33298829
Alignment:
Q  331 ttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||||||||||||||||||||||||||||    
T  33298794 ttcaatctaaataagtgattttcacatagatctagg 33298829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 28239753 - 28239807
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtg-attttcacatagatctagg 366  Q
    ||||||||||| || ||||||||||||||||||||  ||||||||||||||||||    
T  28239753 tcatctttttctctctatttcaatctaaataagtgttttttcacatagatctagg 28239807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 32724577 - 32724534
Alignment:
Q  383 atttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  32724577 atttcatcatctaactgtggtggtttgttgttcgtcgtcttgtg 32724534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 41896405 - 41896444
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacat 357  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  41896405 tttttccctttctttcaatctaaataagtgattttcacat 41896444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 16794213 - 16794267
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    ||||||||||| || || |||||||||||||||||| |||||||||| |||||||    
T  16794213 tcatctttttctctctaattcaatctaaataagtgatttttcacataaatctagg 16794267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 12184220 - 12184257
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctag 365  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  12184220 tatttcaatctaaataagtgtttttcacatagctctag 12184257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 12428648 - 12428685
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctag 365  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  12428648 tatttcaatctaaataagtgtttttcacatagctctag 12428685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 17427382 - 17427329
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||| || ||||||| | |||||||||| |||||| |||||||||||    
T  17427382 tcatctttttctctctatttcagtgtaaataagtgcttttcaaatagatctagg 17427329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 17431032 - 17430979
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||||| || || ||| |||||||||||||||| |||||| |||||||||||    
T  17431032 tcatctttctctctctatgtcaatctaaataagtgcttttcagatagatctagg 17430979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 39153293 - 39153256
Alignment:
Q  329 atttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  39153293 atttcaatttaaataagtgattttcacatagatttagg 39153256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 358
Target Start/End: Original strand, 14585606 - 14585634
Alignment:
Q  330 tttcaatctaaataagtgattttcacata 358  Q
    |||||||||||||||||||||||||||||    
T  14585606 tttcaatctaaataagtgattttcacata 14585634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 18890893 - 18890861
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacat 357  Q
    |||| ||||||||||||||||||||||||||||    
T  18890893 ctttctttcaatctaaataagtgattttcacat 18890861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 358
Target Start/End: Complemental strand, 26469379 - 26469351
Alignment:
Q  330 tttcaatctaaataagtgattttcacata 358  Q
    |||||||||||||||||||||||||||||    
T  26469379 tttcaatctaaataagtgattttcacata 26469351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 366
Target Start/End: Original strand, 33342375 - 33342411
Alignment:
Q  331 ttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    |||||||||||||||||| ||||||||||||||||||    
T  33342375 ttcaatctaaataagtgatttttcacatagatctagg 33342411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 420
Target Start/End: Complemental strand, 2843397 - 2843288
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  2843397 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatctaggtttttt----tttgtaatttcatcatctaagtgtggtgat 2843302  T
Q  407 ttgttattcgtcgt 420  Q
    ||||| ||||||||    
T  2843301 ttgttgttcgtcgt 2843288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 21266305 - 21266414
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||| |||||||    
T  21266305 tcatctttttctctttatttcaatctaaataagtgattttcacatagatctagg----gttttctttttgatttcatcatctaagtgtggtggtttgtta 21266400  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  21266401 ttcgtcgtcttgtg 21266414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 46338960 - 46339078
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |         ||||||||||||||||| |||||||||||||    
T  46338960 ccctcttcatctttttctctttatttcaatgtaaataagtgattttcacatagatcta-gcttttttttctttgtaatttcatcatttaagtgtggtgat 46339058  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  46339059 ttgttgttcgtcgtcttgtg 46339078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 46821921 - 46822039
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||| |||||||    
T  46821921 ccctcttcatctttttctctttatttcaatctaaataagtgattttcacatagatcta-gattttttttctttgtaatttcatcatctaagtatggtgat 46822019  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| |||||| |||||||    
T  46822020 ttgttgttcgtcttcttgtg 46822039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 48207809 - 48207925
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||| |         |||||| ||||||||||||||||||||||||    
T  48207809 ccctcttcatctttttctcaatatttcaatctaaataagtgattttcacatagatctatgtttttt---ctttgtgatttcatcatctaagtgtggtgat 48207905  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  48207906 ttgttgttcgtcgtcttgtg 48207925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 426
Target Start/End: Complemental strand, 23425541 - 23425425
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||||         |||||| |||||||||| ||||||||||| |    
T  23425541 ccctcttcatctttttctctatatttcaatctaaataagtgatttttacatagatctagg---ttttttctttgtgatttcatcatttaagtgtggtggt 23425445  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  23425444 ttgttgttcgtcgtcttgtg 23425425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 1485420 - 1485310
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||||||          |||||| |||||||||||||||||||||| ||||||     
T  1485420 tcatctttttctctctatttcaatctaaataagtgactttcacatagatctag---attttttctttgtgatttcatcatctaagtgtggtggtttgttg 1485324  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  1485323 ttcgtcgtcttgtg 1485310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 35496339 - 35496228
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||||||||         |||||| |||||||||||||||||||||| ||||||     
T  35496339 tcatctttttctctctatttcaatctaattaagtgattttcacatagatctagg--tttttttctttgtgatttcatcatctaagtgtggtggtttgttg 35496242  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||| ||||||||||    
T  35496241 ttcatcgtcttgtg 35496228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 35667395 - 35667285
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||||||||         |||| | |||||||||||||||||||||| ||||||     
T  35667395 tcatatttttctctctatttcaatctaaataagtgattttcacatagatctagg---ttttttctttttgatttcatcatctaagtgtggtggtttgttg 35667299  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  35667298 ttcgtcgtcttgtg 35667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 22928034 - 22927923
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||          |||||| |||||||||||||||||||||| ||||||     
T  22928034 tcatctttttctctctatttcaatctaaataagtgactttcacacagatctag--ttttttttctttgtgatttcatcatctaagtgtggtggtttgttg 22927937  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  22927936 ttcgtcgtcttgtg 22927923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 42408275 - 42408386
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| |||||||||||||||||||| || ||||||||| ||||||||         |||||| |||||||||| ||||||||||| ||||||     
T  42408275 tcatctttttctctttatttcaatctaaataattgtttttcacatggatctagg--tttttttctttgtgatttcatcatttaagtgtggtggtttgttg 42408372  T
Q  413 ttcgtcgtcttgtg 426  Q
    ||||||||||||||    
T  42408373 ttcgtcgtcttgtg 42408386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 26492272 - 26492389
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||| |    
T  26492272 ccctcttcatctttttctctctatttcaatttaaataagtgattttcacatagatctag--ttttttttctttgtgatttcatcatctaagtgtggtggt 26492369  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| | || |||||||||    
T  26492370 ttgttgtccgccgtcttgtg 26492389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 26583621 - 26583738
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||||||||  || ||||||||||||||||||||||||||| ||| |||||||         |||||| |||||||||||||||||||||| |    
T  26583621 ccctcttcatctttttatctctatttcaatctaaataagtgattttcatatatatctagg--tttttttctttgtgatttcatcatctaagtgtggtggt 26583718  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||| ||||||||||    
T  26583719 ttgttgttcatcgtcttgtg 26583738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 42311187 - 42311301
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| ||||| ||||| || |||||||||||||||||||||| ||||||||||||||||         |||||| |||||||||| ||||||||| | |    
T  42311187 ccctcttcatcattttctctctatttcaatctaaataagtgatattcacatagatctagg--tttttttctttgtgatttcatcatttaagtgtggcggt 42311284  T
Q  407 ttgttattcgtcgtctt 423  Q
    ||||| |||||||||||    
T  42311285 ttgttgttcgtcgtctt 42311301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 17223136 - 17223052
Alignment:
Q  339 aaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  17223136 aaataagtgattttcacatagatctaggtttttt---ctttgtgatttcatcatctaagtgtggtgatttgttgttcatcgtcttgtg 17223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 23085428 - 23085545
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||||||||||  | ||||||||||||||||| ||| |||||||||||||||||         |||||| |||| ||||||||||||||||| |    
T  23085428 ccctcttcatctttttctttctatttcaatctaaataattgactttcacatagatctagg--tttttttctttgtgattttatcatctaagtgtggtggt 23085525  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||| ||||    
T  23085526 ttgttgttcgtcgtcatgtg 23085545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 34773685 - 34773732
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtctt 423  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34773685 ctttgtaatttgatcatctaagtgtggtgatttgttattcgtcgtctt 34773732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 1448993 - 1448883
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||||||           ||||| |||||||||||||||||||||  ||||||     
T  1448993 tcatctctttctctctatttcaatctaaataagtgattttcacatagatctag---attttttatttgtgatttcatcatctaagtgtggttgtttgttg 1448897  T
Q  413 ttcgtcgtcttgtg 426  Q
    |||||||| |||||    
T  1448896 ttcgtcgtattgtg 1448883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 20116496 - 20116549
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  20116496 tcatctttttctatctatttcaatctaaataagtgattttcacatagatctagg 20116549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 32684598 - 32684651
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  32684598 tcatcgttttctctctatttcaatctaaataagtgattttcacatagatctagg 32684651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 45199195 - 45199085
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    ||||||||||| || ||||| ||| ||||||||||||||||| ||||||||| |         |||||| |||||||||||||||||||||| ||||||     
T  45199195 tcatctttttctctatattttaatttaaataagtgattttcatatagatctaagtttttt---ctttgtgatttcatcatctaagtgtggtggtttgttg 45199099  T
Q  413 ttcgtcgtcttgtg 426  Q
    |||||||| |||||    
T  45199098 ttcgtcgttttgtg 45199085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 31235962 - 31235902
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtga-ttttcacatagatctagg 366  Q
    ||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||    
T  31235962 ccctcttcatctttttctctctatttcaatctaaataagtgatttttcacatagatctagg 31235902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 433856 - 433744
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgt-ggtgatttgtt 411  Q
    ||||||||||| || ||||||||||||||||| ||| ||||||||||||||||          |||||| |||||||||||||||||| |||| ||||||    
T  433856 tcatctttttctctctatttcaatctaaataaatgactttcacatagatctag--atttttttctttgtgatttcatcatctaagtgtgggtggtttgtt 433759  T
Q  412 attcgtcgtcttgtg 426  Q
     ||||| ||||||||    
T  433758 gttcgttgtcttgtg 433744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 42067209 - 42067114
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||||||||||||||| |||          |||| | ||||||||||||||||||| || |||||| ||||||||||||||    
T  42067209 tatttcaatctaaataagtgattttcacatagatatag---attttttctttctgatttcatcatctaagtgtgttggtttgttgttcgtcgtcttgtg 42067114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 426
Target Start/End: Complemental strand, 14628048 - 14627932
Alignment:
Q  308 cctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatt 407  Q
    |||| ||||||||||  || || |||||||||||||||||||||||||||| || ||||         | |||| |||||||||||||||||||||| ||    
T  14628048 cctcttcatctttttttctctaattcaatctaaataagtgattttcacataaatataggttttttt--ccttgtgatttcatcatctaagtgtggtggtt 14627951  T
Q  408 tgttattcgtcgtcttgtg 426  Q
    |||| |||||||| |||||    
T  14627950 tgttgttcgtcgtattgtg 14627932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 6558851 - 6558900
Alignment:
Q  376 ctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgt 425  Q
    |||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  6558851 ctttgtgatttcatcatctaagtgtggtggtttgttgttcgtcgtcttgt 6558900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 3860867 - 3860915
Alignment:
Q  315 atctttttcgctttatttcaatctaaataagtgattttcacatagatct 363  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  3860867 atctttttctctttgtttcaatataaataagtgattttcacatagatct 3860915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 36143779 - 36143832
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||| || || ||||||||||||||||| ||||||| ||||||||||    
T  36143779 tcatctttttctctctaattcaatctaaataagtgtttttcacgtagatctagg 36143832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 1749340 - 1749300
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  1749340 tttttccctttctttcaatctaaataagtgattttcacata 1749300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 5546277 - 5546317
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  5546277 tttttctctctatttcaatctaaataagtgattttcacata 5546317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 24351040 - 24351000
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  24351040 tttttccctttctttcaatctaaataagtgattttcacata 24351000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 366
Target Start/End: Complemental strand, 7640928 - 7640893
Alignment:
Q  331 ttcaatctaaataagtgattttcacatagatctagg 366  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7640928 ttcaatctaaataagtgattttcacatagatatagg 7640893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 23786558 - 23786596
Alignment:
Q  385 ttcatcatctaagtgtggtgatttgttattcgtcgtctt 423  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  23786558 ttcatcatctaagtgtggtggtttgttgttcgtcgtctt 23786596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 7640874 - 7640825
Alignment:
Q  377 tttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||| |||||||||||||||||||||| ||||||  |||||| ||||||    
T  7640874 tttgtgatttcatcatctaagtgtggtggtttgttgctcgtcgccttgtg 7640825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 22742839 - 22742872
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  22742839 ctttctttcaatctaaataagtgattttcacata 22742872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 28476122 - 28476155
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  28476122 ctttctttcaatctaaataagtgattttcacata 28476155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 32522075 - 32522042
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagat 361  Q
    ||||||||| ||||||||||||||||||||||||    
T  32522075 tatttcaatttaaataagtgattttcacatagat 32522042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 48930681 - 48930714
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  48930681 ctttctttcaatctaaataagtgattttcacata 48930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 426
Target Start/End: Complemental strand, 16486 - 16373
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtta 412  Q
    |||||| |||| || |||||||||||||||||||||||||||||||||| ||||         |||||| |||||||||||||||||||||| ||||||     
T  16486 tcatctgtttctctctatttcaatctaaataagtgattttcacatagatttaggtttttttttctttgtgatttcatcatctaagtgtggtggtttgttg 16387  T
Q  413 ttcgtcgtcttgtg 426  Q
    || |||||||||||    
T  16386 tttgtcgtcttgtg 16373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 426
Target Start/End: Complemental strand, 201534 - 201425
Alignment:
Q  314 catctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttat 413  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||          |||||| ||||||||||||||||||| || |||||| |    
T  201534 catctttttctctatatttcaatctaaataagtgattttcacatagatctag---attttttctttgtgatttcatcatctaagtgtgatggtttgttgt 201438  T
Q  414 tcgtcgtcttgtg 426  Q
    |||| ||||||||    
T  201437 tcgtagtcttgtg 201425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 411
Target Start/End: Original strand, 8633 - 8728
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgtt 411  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||| ||||||    
T  8633 tcatctttttatctctatttcaatctaaataagtgattttcacatagatctagg---ttttttctttgtgatttcatcatctaagtgtggtggtttgtt 8728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 20492 - 20449
Alignment:
Q  383 atttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  20492 atttcatcatctaagtgtggtggtttgttgttcgtcgtcttgtg 20449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 5305 - 5422
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgat 406  Q
    ||||| |||||||| || || || |||||||||||||||||| ||| ||||| ||||| |         |||||| |||||||||| |||||||| || |    
T  5305 ccctcttcatctttctctctctacttcaatctaaataagtgacttttacatatatctatgttttttt--ctttgtgatttcatcatttaagtgtgatggt 5402  T
Q  407 ttgttattcgtcgtcttgtg 426  Q
    ||||| ||||||||||||||    
T  5403 ttgttgttcgtcgtcttgtg 5422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 361945 - 361852
Alignment:
Q  328 tatttcaatctaaataagtgattttcacatagatctaggnnnnnnnnnctttgtaatttcatcatctaagtgtggtgatttgttattcgtcgtcttgtg 426  Q
    ||||||||||||||||||| |||||||||||||  ||||          ||||| |||||||||| ||||| ||||| |||||| ||||||||||||||    
T  361945 tatttcaatctaaataagtaattttcacatagagttaggttttt-----tttgtgatttcatcatttaagtatggtggtttgttgttcgtcgtcttgtg 361852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 6245 - 6295
Alignment:
Q  307 ccctcctcatctttttcgctttatttcaatctaaataagtgattttcacat 357  Q
    ||||| ||||||||||  || |||| |||||||||||||||||||||||||    
T  6245 ccctcttcatctttttttctctattccaatctaaataagtgattttcacat 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 1864 - 1831
Alignment:
Q  325 ctttatttcaatctaaataagtgattttcacata 358  Q
    |||| |||||||||||||||||||||||||||||    
T  1864 ctttctttcaatctaaataagtgattttcacata 1831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 36849 - 36804
Alignment:
Q  313 tcatctttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||||||||| | ||||||||| ||||||||||||||| |||||    
T  36849 tcatctttttcgttgtatttcaatataaataagtgatttttacata 36804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 453851 - 453891
Alignment:
Q  318 tttttcgctttatttcaatctaaataagtgattttcacata 358  Q
    |||||| |||||||| ||| |||||||||||||||||||||    
T  453851 tttttctctttattttaatttaaataagtgattttcacata 453891  T

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