View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_27 (Length: 406)
Name: NF11571_high_27
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 143 - 392
Target Start/End: Original strand, 52270987 - 52271236
Alignment:
| Q |
143 |
gttatcataatctcaaagcctgattggtgtacattgcataggttttgtcaatttcgtgaaatactaaaattaatagatcttacatggagttcttcctttt |
242 |
Q |
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| T |
52270987 |
gttatcataatctcaaagcctgattggtgtacattgcataggttttgtcaatttcgtgaaatactaaaattaatagatcttacatggaattcttcctttt |
52271086 |
T |
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| Q |
243 |
atcctggtatcaggaacaacatttaatttctttatgagattgaaaactcctctgctgctttcatcttcagccggtgaaaagaattgagcgttcttctcct |
342 |
Q |
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| T |
52271087 |
atcctggtatcaggaacaacatttaatttctttatgagattgaaaactcccctgctgctttcatcttcagccggtgaaaagaattgagcgttcttctcct |
52271186 |
T |
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| Q |
343 |
gttacacattacaattttgatataaaaacaaaaataatcatcatttcatc |
392 |
Q |
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| T |
52271187 |
gttacacattacaattttgatataaaaacaaaaataatcatcatttcatc |
52271236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 52270819 - 52270988
Alignment:
| Q |
1 |
gataaaggagcacttcatcaggtaaaatagctatgttctagcagttcaaagtatattacctttgatgatttagttatgttttggccaatgtgtggcatat |
100 |
Q |
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| T |
52270819 |
gataaaggagcacttcatcaggtaaaatagctatgttctagcagttcaaagtatattacctttgatgatttagttatgttttggccaatgtgtggcatat |
52270918 |
T |
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| Q |
101 |
caaatatggctgcagcatacaataatggaacaaaccgttagcgttatcataatctcaaagcctgattggt |
170 |
Q |
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| T |
52270919 |
caaatatggctgcagcatacaataatggaacaaaccgttagcgttatcataatctcaaagcctgattggt |
52270988 |
T |
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