View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_high_31 (Length: 362)
Name: NF11571_high_31
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 28030122 - 28029876
Alignment:
| Q |
16 |
ctatttgcatggatgaattcacaaaaggcgagatgattcaatcttttggagtgtgtggccatgaatttcatactgcgtgtctcaactcgtggttacttgg |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28030122 |
ctatttgcgtggatgaattcacaaaaggcgagatgattcaatcttttggagtgtgtggccatgaatttcatactgcgtgtctcaactcgtggttacttgg |
28030023 |
T |
|
| Q |
116 |
aggaaaaactacttgtccagtttgtcgccatgatttgttgtctaactgttaggcatgtaaaagttaagatctcattttctgtccnnnnnnnaatgtttaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28030022 |
aggaaaaactacttgtccagtttgtcgccatgatttgttgtctaactattaggcatgtaaaagttaagatctcattttctgtcc-ttttttaatgtttaa |
28029924 |
T |
|
| Q |
216 |
ttagatctgtacatagtgaacagctgaaagattagttttaaacatgtc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28029923 |
ttagatctgtacatagtgaacagctgaaagattagttttaaacatgtc |
28029876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 33142284 - 33142145
Alignment:
| Q |
16 |
ctatttgcatggatgaattcacaaaaggcgagatgattcaatcttttggagtgtg--tggccatgaatttcatactgcgtgtctcaactcgtggttactt |
113 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||| |||||||| ||||||| || || || |||||||||||| | | || ||||| || ||||||||| |
|
|
| T |
33142284 |
ctatttgcatggaagaatttactaaaggggagttgattcaaccttttggggtttgggtgctcatgaatttcattcatcatgcctcaattcttggttactt |
33142185 |
T |
|
| Q |
114 |
ggaggaaaaactacttgtccagtttgtcgccatgatttgt |
153 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || ||||||| |
|
|
| T |
33142184 |
ggaggaaaaacaacttgtccaatttgtcgtcaagatttgt |
33142145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 28029847 - 28029811
Alignment:
| Q |
292 |
ctatttgattaatgaaatccctctgtcgagaattttc |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28029847 |
ctatttgattaatgaaatccctctgtcgagaattttc |
28029811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 33143474 - 33143337
Alignment:
| Q |
16 |
ctatttgcatggatgaattcacaaaaggcgagatgattcaatcttttggagtgtgtggccatgaatttcatactgcgtgtctcaactcgtggttacttgg |
115 |
Q |
| |
|
||||||||||||| |||| | ||||| ||| |||||||| |||||| |||||| |||||||||||| | | || ||||| || ||||||||||| |
|
|
| T |
33143474 |
ctatttgcatggaacaatttaagaaaggggagttgattcaaccttttgatttgtgtgttcatgaatttcattcctcttgcctcaattcttggttacttgg |
33143375 |
T |
|
| Q |
116 |
aggaaaaactacttgtccagtttgtcgccatgatttgt |
153 |
Q |
| |
|
|||||||| ||||| || ||||| || || ||||||| |
|
|
| T |
33143374 |
gggaaaaacaacttgccccgtttgccgtcaagatttgt |
33143337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University