View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_high_34 (Length: 355)
Name: NF11571_high_34
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 30049590 - 30049252
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30049590 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctag |
30049491 |
T |
|
| Q |
101 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049490 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
30049391 |
T |
|
| Q |
201 |
ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049390 |
ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
30049291 |
T |
|
| Q |
301 |
cacaccatagcacaattgattcctcttgtacatgattca |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30049290 |
cacaccatagcacaattggttcctcttgtacatgattca |
30049252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 7162543 - 7162205
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
7162543 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccag |
7162444 |
T |
|
| Q |
101 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7162443 |
cttgcttcttagctccatgaacttggcactagcaagtgccttttttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctcca |
7162344 |
T |
|
| Q |
201 |
ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7162343 |
ttctgttcagcttctcttatagcatgaaatttgacattgatatgctttgctcttccatgttgaattggatttttggcagttgctatagctgatttgttgt |
7162244 |
T |
|
| Q |
301 |
cacaccatagcacaattgattcctcttgtacatgattca |
339 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
7162243 |
cacaccatagcacaattggttcctcttgtatatgattca |
7162205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30045187 - 30045121
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045187 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
30045121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 3945844 - 3945506
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3945844 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctag |
3945745 |
T |
|
| Q |
101 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945744 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
3945645 |
T |
|
| Q |
201 |
ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945644 |
ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
3945545 |
T |
|
| Q |
301 |
cacaccatagcacaattgattcctcttgtacatgattca |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3945544 |
cacaccatagcacaattggttcctcttgtacatgattca |
3945506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3941445 - 3941377
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941445 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
3941377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 39949586 - 39949924
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
39949586 |
acataagcaataaagtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccag |
39949685 |
T |
|
| Q |
101 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949686 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
39949785 |
T |
|
| Q |
201 |
ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949786 |
ttttgttcagcttctcttatagcatgaaattttacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
39949885 |
T |
|
| Q |
301 |
cacaccatagcacaattgattcctcttgtacatgattca |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39949886 |
cacaccatagcacaattggttcctcttgtacatgattca |
39949924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39953978 - 39954045
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacac |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39953978 |
acataagcaataaagtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacac |
39954045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 22365472 - 22365134
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
22365472 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttatctggaatactcccag |
22365373 |
T |
|
| Q |
101 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22365372 |
cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctcca |
22365273 |
T |
|
| Q |
201 |
ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365272 |
ttctgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt |
22365173 |
T |
|
| Q |
301 |
cacaccatagcacaattgattcctcttgtacatgattca |
339 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22365172 |
cacaccatagcacaattggttcctcttgtacatgattca |
22365134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22361085 - 22361019
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361085 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
22361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
| Q |
210 |
gcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt |
274 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
22135264 |
gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt |
22135200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 34 - 339
Target Start/End: Original strand, 196458 - 196763
Alignment:
| Q |
34 |
attcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactagg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
196458 |
attcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactagg |
196557 |
T |
|
| Q |
134 |
aagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196558 |
aagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttg |
196657 |
T |
|
| Q |
234 |
acattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
196658 |
acattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacat |
196757 |
T |
|
| Q |
334 |
gattca |
339 |
Q |
| |
|
|||||| |
|
|
| T |
196758 |
gattca |
196763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 200837 - 200872
Alignment:
| Q |
34 |
attcagaaaagttttataggtcaattagtcaacact |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
200837 |
attcagaaaagttttataggtcaattagtcaacact |
200872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1330635 - 1330569
Alignment:
| Q |
1 |
acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
67 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1330635 |
acataagcaatagagtaacataaacaataaagtattcagacaagttttataggtcaattagtcaaca |
1330569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University