View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_38 (Length: 331)
Name: NF11571_high_38
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 49675673 - 49675372
Alignment:
| Q |
18 |
taagggaccaaaagtcccatcacaccccaatgtttgggtttgcaatcaggtgcaccttcttacattgttcatgaacccttgtgagaaatttatacatttc |
117 |
Q |
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| T |
49675673 |
taagggaccaaaagtcccatcacaccccaatgtttgggtttgcaatcaggtgcaccttcttacattgttcatgaacccttgtgagaaatttatacatttc |
49675574 |
T |
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| Q |
118 |
tgtcaaggtaatcacaaatatttaannnnnnnggacctagcacaaatctgatttgtgttcatgatctgtcgtcaaggaattatgagcattctagtttctc |
217 |
Q |
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| T |
49675573 |
tgtcaaggtaatcacaaatatttaatttttttggacctagcacaaatctgatttgtgttcatgatctgtcgtcaaggaattatgagcattctagtttctc |
49675474 |
T |
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| Q |
218 |
agcatatgattttccttatccaaaatgaaactataggattagttaatccattatcttatggaggatgaaaaacaaccaaatactcctgagtcatctgtgc |
317 |
Q |
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| T |
49675473 |
agcatatgattttccttatccaaaatgaaactataggattagttaatccattatcttatggaggatgaaaagcaaccaaatattcctgagtcatttgtgc |
49675374 |
T |
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| Q |
318 |
tt |
319 |
Q |
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|| |
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| T |
49675373 |
tt |
49675372 |
T |
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