View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_39 (Length: 323)
Name: NF11571_high_39
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 33908126 - 33908406
Alignment:
| Q |
18 |
gcaccatctcctacgttaaagccttaataacatcgtgcataaactgaaaatgtgcatatcaaactgcatattgtccgcgttgaaagaatccaccttgtca |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33908126 |
gcaccatctcctacgttaaagccttactaacatcgtgcataaactgaaaatgtgcctatcaaactgcatatcgtccgcgttgaaagaatccaccttgtca |
33908225 |
T |
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| Q |
118 |
gacgaaggcggtggatgatgagacaaccgacgacatgggtatcaacattgtcaagtgtggaatgccgaaagctgtgactactaacaagtcagttatggta |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33908226 |
gacgaaggcggtggatgatgagtcaaccgacgacatgggtatcaacattgtcaag-----------------tgtgactactaacaagtcagttatggta |
33908308 |
T |
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| Q |
218 |
ttagaaattccaacactttgcgtattaaacatgnnnnnnnnaattagttttagagttgtcagaaggttcacaaggtttcttaaacttcttataggcat |
315 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33908309 |
ttagaaattccaacactttgcgtattaaacttttttttttttattagttttagagttgttagaaggttcacaaggtttcttaaacttcttataggcat |
33908406 |
T |
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