View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_40 (Length: 322)
Name: NF11571_high_40
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 36702967 - 36703262
Alignment:
| Q |
12 |
agagactcgagaaatttcatcaatgtgagggttatgaggaaagaaagcttgtgctaactatgatgaaccgcaacacatgcaaattaacccttcgaatcaa |
111 |
Q |
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| T |
36702967 |
agagactcgagaaatttcatcgatgtgagggttgtgaggaaagaaagcttgtgctaactatgatgaaccgcaacacatgcaaattaacccttcgaatcaa |
36703066 |
T |
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| Q |
112 |
acacaagaaagagtagagatcaaatttccacctcctcatcaataagcattgtgtttcctcaactgccttaattcaacatgagtgttgaaggaaaacttgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36703067 |
acacaagaaagagtagagatcaaatttccacctcctcatgaataaccattgtgtttcctcaactgccttaattcaacatgagtgttgaaggaagacttgg |
36703166 |
T |
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| Q |
212 |
attataacttacacacgtttggaggataagtgcttcctcctctggtatcaaccaaaattcaaaatggaggcaatgaggaatattaagtcttgaaag |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36703167 |
attataacttacacatgtttggaggataagtgcttcctcctctggtatcaaccaaaattcaaaatggaggcaatgaggaatattaagtcttgaaag |
36703262 |
T |
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