View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_42 (Length: 321)
Name: NF11571_high_42
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 19331040 - 19330735
Alignment:
| Q |
1 |
gcaaccgatagaaaaaacaacagaaggtttcatacctttattagtgttttgagcactgacaattccaggaactacttcagatgtctaaatcacaggacat |
100 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19331040 |
gcaaccgatagaaaaaacaacagaagttttcatacttttattagtgttttgagcactgacaattccaggaactacttcagatgtctaaatcacaggacat |
19330941 |
T |
|
| Q |
101 |
tgtttataagaatatcagtctaggaggtaatgtatatgtttttgggtctagaattacatgacatgcttcaattgcatgtactgctgccaaccatatattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19330940 |
tgtttataagaatatcagtctaggaggtaatgtatatgtttttgggtctagaattacatgacatgcttccattgcatgtactgctgccaaccatatattg |
19330841 |
T |
|
| Q |
201 |
gaatcatccactcataactcttagcgataaagataaattattttcatattcacatgaaggtctaaacaattcgaacctttatattgcataataacataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19330840 |
gaatcatccactcataactcttagcgataaagataaattattttcatattcacatgaaggtctaaacaattcgaacctttatattgcataataacatgaa |
19330741 |
T |
|
| Q |
301 |
gttact |
306 |
Q |
| |
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|||||| |
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| T |
19330740 |
gttact |
19330735 |
T |
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