View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_47 (Length: 299)
Name: NF11571_high_47
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 31710696 - 31710990
Alignment:
| Q |
1 |
cttcaaaactttctaatagaattcaagtagcaaagtaagtatggaatcccaaaatatagagcaggttgcttccgatttgctcaaagctcaaagccatgta |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31710696 |
cttcaaaactttctaatagaattcaagtagcaa-gtaagtatggaatcccaaaatatagagcaggttgcttccaatttgctcaaagctcaaagccatgta |
31710794 |
T |
|
| Q |
101 |
tggaatcacatgtttaacttcataaattcaatgtcacttaaatgtgtagttgacttaggcataccagatatcatacacaactatggcaaacccatgccac |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31710795 |
tggaatcacatgtttaacttcataaattccatgtcacttaaatgtgtagttgacttaggcataccagatatcatacacaactatggcaaacccataccac |
31710894 |
T |
|
| Q |
201 |
tctcaaaactcatttcttcactatcaatccacccttcaaaaaaccacggcattcatcgtttgatgcgaatcatgactcactccggcttcatctctc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
31710895 |
tctcaaaactcatttcttcactatcaatccacccttcaaaaaaccacggcattcatcgcttgatgcgaatcatgactcactccggcttcttctctc |
31710990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 31734134 - 31734396
Alignment:
| Q |
37 |
aagtatggaatcccaaaatat---agagcaggttgcttccgatttgctcaaagctcaaagccatgtatggaatcacatgtttaacttcataaattcaatg |
133 |
Q |
| |
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|||||||||||||||||||| |||| | ||||||||| |||||||||| |||||||| || |||||||||||||| || |||||||||||||||||| |
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| T |
31734134 |
aagtatggaatcccaaaataatgaagagaatgttgcttccaatttgctcaaggctcaaagtcacgtatggaatcacattttcaacttcataaattcaatg |
31734233 |
T |
|
| Q |
134 |
tcacttaaatgtgtagttgacttaggcataccagatatcatacacaactatggcaaacccatgccactctcaaaactcatttcttcactatcaatccacc |
233 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
31734234 |
tcgcttaaatgtgtagttgacttaggcataccagatattatacacaaccatgggaaacccatgcctatctcaaaactcatttcttcactaccaatccacc |
31734333 |
T |
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| Q |
234 |
cttcaaaaaaccacggcattcatcgtttgatgcgaatcatgactcactccggcttcatctctc |
296 |
Q |
| |
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|||||||||| | |||| ||||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
31734334 |
cttcaaaaaagccttgcatccatcgcttgatgcgaatcatgactcactctggcttcttctctc |
31734396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 76 - 289
Target Start/End: Original strand, 31713768 - 31713981
Alignment:
| Q |
76 |
tttgctcaaagctcaaagccatgtatggaatcacatgtttaacttcataaattcaatgtcacttaaatgtgtagttgacttaggcataccagatatcata |
175 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| || | |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||| |
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| T |
31713768 |
tttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttaggaatacctgatattata |
31713867 |
T |
|
| Q |
176 |
cacaactatggcaaacccatgccactctcaaaactcatttcttcactatcaatccacccttcaaaaaaccacggcattcatcgtttgatgcgaatcatga |
275 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||| |||| || |||| |||||||| |
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| T |
31713868 |
cacaactatggcaaacccatgccactttcaaaactcatttcttcactaccaatccacccttcaaaaaaatcctgcatctatcgcttaatgcaaatcatga |
31713967 |
T |
|
| Q |
276 |
ctcactccggcttc |
289 |
Q |
| |
|
|||| || |||||| |
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| T |
31713968 |
ctcaatctggcttc |
31713981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 69 - 279
Target Start/End: Original strand, 31702329 - 31702539
Alignment:
| Q |
69 |
cttccgatttgctcaaagctcaaagccatgtatggaatcacatgtttaacttcataaattcaatgtcacttaaatgtgtagttgacttaggcataccaga |
168 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || |
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| T |
31702329 |
cttccaatttgctcaaagctcaaagccacatatggaatcacattttcaacttcataaattccatgtcccttaaatgtgtggttgatttaggcatacctga |
31702428 |
T |
|
| Q |
169 |
tatcatacacaactatggcaaacccatgccactctcaaaactcatttcttcactatcaatccacccttcaaaaaaccacggcattcatcgtttgatgcga |
268 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||| | ||||||||| ||||||||| |
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| T |
31702429 |
tatcatacacaattatggcaaacccatatcactctcaaaacttatttctttgctaccaatccacccttcaaaaacatgcttcattcatcgcttgatgcga |
31702528 |
T |
|
| Q |
269 |
atcatgactca |
279 |
Q |
| |
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|| |||||||| |
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| T |
31702529 |
ataatgactca |
31702539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 31683741 - 31683963
Alignment:
| Q |
19 |
gaattcaagtagcaaagtaagtatggaatcccaaaatatagagcaggttgcttccgatttgctcaaagctcaaagccatgtatggaatcacatgtttaac |
118 |
Q |
| |
|
||||||||||||| | | |||||||||||||||| || ||| | |||||||| |||||||||||||||||||||| ||||||| ||||| || ||| |
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| T |
31683741 |
gaattcaagtagcta-gcaagtatggaatcccaacatggagataatgttgcttcaaatttgctcaaagctcaaagccacatatggaaacacattttcaac |
31683839 |
T |
|
| Q |
119 |
ttcataaattcaatgtcacttaaatgtgtagttgacttaggcataccagatatcatacacaactatggcaaacccatgccactctcaaaactcatttctt |
218 |
Q |
| |
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||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| ||| ||||||||||||||||| || |
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| T |
31683840 |
ttcataaattccatgtctcttaaatgtgtagtcgacttaggcataccagatatcatacacaattatggtagacctatgtcactctcaaaactcattagtt |
31683939 |
T |
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| Q |
219 |
cactatcaatccacccttcaaaaa |
242 |
Q |
| |
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|||| ||||| ||||| |||||| |
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| T |
31683940 |
cacttccaatcaaccctacaaaaa |
31683963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 30569770 - 30569954
Alignment:
| Q |
84 |
aagctcaaagccatgtatggaatcacatgtttaacttcataaattcaatgtcacttaaatgtgtagttgacttaggcataccagatatcatacacaacta |
183 |
Q |
| |
|
||||||||| ||| |||| || ||||| |||| |||||||| |||||||| |||||||||| | |||| || | ||||||||| | ||||||||||| |
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| T |
30569770 |
aagctcaaacccaagtattcaaccacatttttagtttcataaactcaatgtcccttaaatgtgcaattgaattgtgtataccagatgttatacacaacta |
30569869 |
T |
|
| Q |
184 |
tggcaaacccatgccactctcaaaactcatttcttcactatcaatccacccttcaaaaaaccacggcattcatcgtttgatgcga |
268 |
Q |
| |
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|||| |||| || |||||||||||||||||||||| || ||||||||||||| |||| | | ||| ||||||||||||||| |
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| T |
30569870 |
tggccaaccaatcccactctcaaaactcatttctttgttaccaatccacccttccaaaaccggtgacatacatcgtttgatgcga |
30569954 |
T |
|
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