View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_high_5 (Length: 649)

Name: NF11571_high_5
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_high_5
NF11571_high_5
[»] chr5 (5 HSPs)
chr5 (171-423)||(26599160-26599412)
chr5 (25-162)||(26591315-26591444)
chr5 (25-118)||(26599427-26599520)
chr5 (25-109)||(12903194-12903278)
chr5 (484-622)||(26599011-26599153)
[»] chr1 (3 HSPs)
chr1 (19-109)||(10450657-10450747)
chr1 (25-110)||(7147393-7147478)
chr1 (25-110)||(31412165-31412249)
[»] chr7 (3 HSPs)
chr7 (25-109)||(23259704-23259788)
chr7 (25-109)||(39303966-39304050)
chr7 (40-108)||(23259935-23260003)
[»] chr3 (5 HSPs)
chr3 (25-109)||(33801029-33801113)
chr3 (25-109)||(39916475-39916559)
chr3 (18-109)||(39624635-39624726)
chr3 (24-109)||(39919010-39919095)
chr3 (25-87)||(26662908-26662970)
[»] scaffold0856 (1 HSPs)
scaffold0856 (25-110)||(2600-2685)
[»] chr8 (7 HSPs)
chr8 (25-109)||(9944205-9944289)
chr8 (25-111)||(37694997-37695083)
chr8 (25-111)||(37699520-37699606)
chr8 (25-110)||(37683114-37683199)
chr8 (18-109)||(39570777-39570867)
chr8 (25-109)||(34580866-34580949)
chr8 (25-103)||(34578125-34578202)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 171 - 423
Target Start/End: Complemental strand, 26599412 - 26599160
Alignment:
Q  171 actgatgagttattactgtcacaattcattaattccccagtgttttagtccaggtaaattaactctgaaatttcgtagttccacacaccatagagcaata 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599412 actgatgagttattactgtcacaattcattaattccccagtgttttagtccaggtaaattaactctgaaatttcgtagttccacacaccatagagcaata 26599313  T
Q  271 ttctttctttatcacatggcaccacaatttgaaaagtagaaaatatacttcgaattgaggtttgctcagaacaatttcagaaaatatacctaatatcaac 370  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599312 ttttttctttatcacatggcaccacaatttgaaaagtagaaaatatacttcgaattgaggtttgctcagaacaatttcagaaaatatacctaatatcaac 26599213  T
Q  371 agtgattgttcaataaattcctcaaattactcacaacaatttcagaaaaatat 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599212 agtgattgttcaataaattcctcaaattactcacaacaatttcagaaaaatat 26599160  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 26591315 - 26591444
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccatatcattttctttcc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          
T  26591315 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccatatcctttt------ 26591408  T
Q  125 tttctttgattatatgttgcttctctcaacccaatcta 162  Q
    || |||||||  ||||||||||||||||||||||||||    
T  26591409 ttcctttgat--tatgttgcttctctcaacccaatcta 26591444  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 26599520 - 26599427
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccatatcatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26599520 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccatatcctttt 26599427  T

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Target: chr5; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 12903194 - 12903278
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12903194 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 12903278  T

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Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 484 - 622
Target Start/End: Complemental strand, 26599153 - 26599011
Alignment:
Q  484 ttgactgactaatttgaaaggcttactgaacaatcattgatattaaa----gtcacgtcaacgnnnnnnnnatcaaaatgtgcacttgggcttggatatg 579  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    |||||||||| |        ||||||||||||||  ||||||| |||||    
T  26599153 ttgattgactaatttgaaaggcttactgaacaatcattgatattaaaattagtcacgtcaatgtttttttaatcaaaatgtgcacaggggcttgtatatg 26599054  T
Q  580 caaaatgaggtaaacttgtagggccaaaatcattaattttaaa 622  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26599053 caaaatgaggtaaacttgtagggccaaaatcattaattttaaa 26599011  T

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Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 10450657 - 10450747
Alignment:
Q  19 catcagggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10450657 catcaaggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 10450747  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 7147478 - 7147393
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccat 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  7147478 ggggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 7147393  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 31412249 - 31412165
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  31412249 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttct-agtaatcctgaggtcgagagtttgagcctctctcaccccat 31412165  T

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Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 23259704 - 23259788
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259704 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 23259788  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 39303966 - 39304050
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39303966 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39304050  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 23259935 - 23260003
Alignment:
Q  40 ttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccc 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23259935 ttggctagcgcgtaggtctcatagcttctgagtaatcctgtggtcgagagttcgagcctctctcacccc 23260003  T

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Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 33801113 - 33801029
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801113 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 33801029  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 39916559 - 39916475
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39916559 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39916475  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 39624726 - 39624635
Alignment:
Q  18 acatcagggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39624726 acatcaaggggtggtggcgcagttggctagcgcgtaggtctcatagctgctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39624635  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 39919095 - 39919010
Alignment:
Q  24 gggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39919095 gggggtggtggcgcagttggccagtgcgtaggtctcatagcttctgagtaatcctgaggtcgagagtttgagcctctctcacccca 39919010  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 26662908 - 26662970
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgag 87  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  26662908 ggggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgag 26662970  T

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Target: scaffold0856 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 2685 - 2600
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2685 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagttatcctgaggtcgagagttcgagcctctctcaccccat 2600  T

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Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 9944289 - 9944205
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9944289 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcacccca 9944205  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 37694997 - 37695083
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccata 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37694997 ggggtgatggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcaccccata 37695083  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 37699520 - 37699606
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccata 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  37699520 ggggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagtttgagcctctctcaccccata 37699606  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 37683114 - 37683199
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccat 110  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  37683114 ggggtggtggtgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcaagcctctctcaccccat 37683199  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 39570777 - 39570867
Alignment:
Q  18 acatcagggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||    
T  39570777 acatcatggggtggtggcgcagttggctagcgcgtaggtctcatagc-taagagttatcctgaggtcgagagttcgagcctctctcacccca 39570867  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 34580949 - 34580866
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 109  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||    
T  34580949 ggggtggtggcgcagttggctagcgcgtaggtctcatagc-taagagttatcctgaggtcgagagttcgagcctctctcacccca 34580866  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 34578202 - 34578125
Alignment:
Q  25 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctc 103  Q
    ||||||||||||||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||||||||    
T  34578202 ggggtggtggcgcagttggctagtgtgtaggtctcatagc-taagagttatcctgaggtcgagagttcgagcctctctc 34578125  T

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