View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_50 (Length: 287)
Name: NF11571_high_50
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_50 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 43552424 - 43552686
Alignment:
| Q |
17 |
atttttgtagctttctaaattcagagaactgataaaaatattgggagcccccactatcttcttacatccaataaaatataataagaattaagaagggtca |
116 |
Q |
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| T |
43552424 |
atttttgtagttttctaaattcagagaactgataaaaatattgggagcccccactatcttcttacatccaataaaatataataagaattaagaagggtca |
43552523 |
T |
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| Q |
117 |
aaatcaaccaagaaatatagtgcattatatcatattatttttctacagcacatatatatgttactgttgaaatccatttttcttgctttaaggtttcatg |
216 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43552524 |
aaatcaactaagaagtataatgcattatatcatattatttttctacagccaatatatatgttactattgaaatccatttttcttgctttaaggtttcatg |
43552623 |
T |
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| Q |
217 |
taatagtagcagaagtttaa----atatgctgcaatatgaaagggaaatttcctagcgtttct |
275 |
Q |
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| T |
43552624 |
taacagaagcagaaatttaaatatatatgctgcaatatgaaagggaaatttcctagcgtttct |
43552686 |
T |
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