View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_58 (Length: 252)
Name: NF11571_high_58
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 33908643 - 33908481
Alignment:
| Q |
8 |
cacagaacttgaatccaattgaacaacatttttcaaaatcaacctttaaacgtgttagtatacgcctaataacttgttagactcctttaatcacagtgat |
107 |
Q |
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| T |
33908643 |
cacaaaacttaaatccaattgaacaacatttttcaaaatcaacctttaaacgtgttagtatacgcctaataacttgttagactcccttaatcacagtgat |
33908544 |
T |
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| Q |
108 |
tatagatttatttgtgctttgaatttggttgattttccttagataaaaaatatttgtaaacgc |
170 |
Q |
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| T |
33908543 |
tatagatttatttgtgctttgaatttggttgattttccttagataaaaaatatttgtaaacgc |
33908481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 33908493 - 33908461
Alignment:
| Q |
191 |
tatttgtaaacgcacacgtagtggaacatgttt |
223 |
Q |
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| T |
33908493 |
tatttgtaaacgcacacgtagtggaacaagttt |
33908461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 19218375 - 19218322
Alignment:
| Q |
113 |
atttatttgtgctttgaatttggttgattttccttagataaaaaatatttgtaa |
166 |
Q |
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| T |
19218375 |
atttatatgtgtttcgaattttgttgattttccttagacaaaaaatacttgtaa |
19218322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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