View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_60 (Length: 250)
Name: NF11571_high_60
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_60 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33063238 - 33063002
Alignment:
| Q |
11 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063238 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33063139 |
T |
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| Q |
111 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33063138 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33063042 |
T |
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| Q |
211 |
taggagcttatatgctggaccatggtggcccaatgtttat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33063041 |
taggagcttatatgctggaccatggtggcccaatgtttat |
33063002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33064333 - 33064097
Alignment:
| Q |
11 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064333 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33064234 |
T |
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| Q |
111 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33064233 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33064137 |
T |
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| Q |
211 |
taggagcttatatgctggaccatggtggcccaatgtttat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33064136 |
taggagcttatatgctggaccatggtggcccaatgtttat |
33064097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33065419 - 33065183
Alignment:
| Q |
11 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33065419 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33065320 |
T |
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| Q |
111 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33065319 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33065223 |
T |
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| Q |
211 |
taggagcttatatgctggaccatggtggcccaatgtttat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33065222 |
taggagcttatatgctggaccatggtggcccaatgtttat |
33065183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33066493 - 33066257
Alignment:
| Q |
11 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33066493 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33066394 |
T |
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| Q |
111 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33066393 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33066297 |
T |
|
| Q |
211 |
taggagcttatatgctggaccatggtggcccaatgtttat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33066296 |
taggagcttatatgctggaccatggtggcccaatgtttat |
33066257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33068631 - 33068395
Alignment:
| Q |
11 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33068631 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33068532 |
T |
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| Q |
111 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33068531 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33068435 |
T |
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| Q |
211 |
taggagcttatatgctggaccatggtggcccaatgtttat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33068434 |
taggagcttatatgctggaccatggtggcccaatgtttat |
33068395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33067579 - 33067343
Alignment:
| Q |
11 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067579 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33067480 |
T |
|
| Q |
111 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
33067479 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagtttccatcattagtgcttaatcattctgttgatt |
33067383 |
T |
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| Q |
211 |
taggagcttatatgctggaccatggtggcccaatgtttat |
250 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
33067382 |
taggagcttatatgctgaaccatggtggcccaatgtttat |
33067343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33069717 - 33069481
Alignment:
| Q |
11 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33069717 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctaagaaaatcaaagttcaa |
33069618 |
T |
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| Q |
111 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
210 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33069617 |
atagtgtataaaggagatgaacaaaatctgttagtgtttatcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33069521 |
T |
|
| Q |
211 |
taggagcttatatgctggaccatggtggcccaatgtttat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
33069520 |
taggagcttatatgctggaccatggtggcccaatgtttat |
33069481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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