View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_high_62 (Length: 249)

Name: NF11571_high_62
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_high_62
NF11571_high_62
[»] chr3 (22 HSPs)
chr3 (19-249)||(10262621-10262851)
chr3 (19-249)||(10197596-10197826)
chr3 (19-249)||(10582533-10582761)
chr3 (19-249)||(10090713-10090944)
chr3 (19-249)||(10361720-10361947)
chr3 (19-249)||(10431960-10432190)
chr3 (30-249)||(10519408-10519624)
chr3 (31-249)||(10665449-10665658)
chr3 (29-249)||(10373774-10373991)
chr3 (30-249)||(10128848-10129064)
chr3 (40-249)||(11779922-11780128)
chr3 (30-249)||(9851662-9851878)
chr3 (30-249)||(10079333-10079549)
chr3 (30-249)||(10186303-10186519)
chr3 (40-249)||(11771157-11771363)
chr3 (29-249)||(10033923-10034140)
chr3 (30-249)||(9840784-9840997)
chr3 (30-155)||(10502600-10502722)
chr3 (91-160)||(11129020-11129089)
chr3 (88-160)||(10530659-10530731)
chr3 (122-174)||(13162975-13163027)
chr3 (122-174)||(13334899-13334951)
[»] scaffold0083 (1 HSPs)
scaffold0083 (30-249)||(55532-55748)
[»] chr2 (1 HSPs)
chr2 (30-249)||(26908811-26909027)
[»] chr8 (2 HSPs)
chr8 (40-165)||(11487042-11487164)
chr8 (88-158)||(44955662-44955732)
[»] chr1 (1 HSPs)
chr1 (120-167)||(827895-827942)
[»] scaffold0002 (2 HSPs)
scaffold0002 (122-174)||(143961-144013)
scaffold0002 (122-174)||(152266-152318)
[»] chr4 (1 HSPs)
chr4 (201-249)||(17851024-17851072)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10262851 - 10262621
Alignment:
Q  19 ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10262851 ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttatt 10262752  T
Q  119 acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta 218  Q
    ||||||||||||||||||||||| | ||||||||||||| || ||||||  ||||||||| |||||| |||||||| |||| ||||||||| || |||||    
T  10262751 acaatttcttctatgcaaggaagtttgctaggcaaatgttcccttagttctggacaattatgtaactccatagctctaagtcgaggaaaagaaagtttta 10262652  T
Q  219 tgccttcaaagggaagccattgattccaatt 249  Q
    |||||||| |||||||||||| |||||||||    
T  10262651 tgccttcatagggaagccattcattccaatt 10262621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10197826 - 10197596
Alignment:
Q  19 ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt 118  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10197826 ggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttatt 10197727  T
Q  119 acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta 218  Q
    |||||||||| |||||||||||| | |||||||||||||||| ||||||   ||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  10197726 acaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtaactccatagctctaagtcgaggaaaagcaaatttta 10197627  T
Q  219 tgccttcaaagggaagccattgattccaatt 249  Q
    |||||||| |||||||||||| |||||||||    
T  10197626 tgccttcatagggaagccattcattccaatt 10197596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10582761 - 10582533
Alignment:
Q  19 ggtccttccatcaagcccatcgatattaattttcttt-actgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttat 117  Q
    ||||||| || |||||||||| || |||||||| ||| | ||||||||||||||||||||||   |||||||||||||||||||||  ||| |||| |||    
T  10582761 ggtcctttcaccaagcccatcaatcttaatttttttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgaacacaaccttctat 10582665  T
Q  118 tacaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttt 217  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10582664 ttcaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattgt 10582565  T
Q  218 atgccttcaaagggaagccattgattccaatt 249  Q
    |||||||||||||||||||||| |||||||||    
T  10582564 atgccttcaaagggaagccatttattccaatt 10582533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10090944 - 10090713
Alignment:
Q  19 ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt 118  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10090944 ggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttatt 10090845  T
Q  119 acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgt-aacttcatagctcgaagttgaggaaaagcaaatttt 217  Q
    |||||||||| |||||||||||| | |||||||||||||||| ||||||   |||||||||||  ||| |||||||| |||| |||||||||||||||||    
T  10090844 acaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtgtactccatagctctaagtcgaggaaaagcaaatttt 10090745  T
Q  218 atgccttcaaagggaagccattgattccaatt 249  Q
    ||||||||| |||||||||||| |||||||||    
T  10090744 atgccttcatagggaagccattcattccaatt 10090713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 10361720 - 10361947
Alignment:
Q  19 ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt 118  Q
    ||||||||||||||||||||| || ||||  || |||| ||||||||||||||||||||||   |||||||||||||||||||||||||| |||| ||||    
T  10361720 ggtccttccatcaagcccatcaatcttaaaattttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgagaacaaccttgtatt 10361816  T
Q  119 acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta 218  Q
    ||||||||||||||||||||||| | ||| |||||||||||| ||||||  ||||||||| |||||| |||||||| |||||||||||||||| ||||||    
T  10361817 acaatttcttctatgcaaggaaggttgctcggcaaatgtccccttagttctggacaattatgtaactccatagctctaagttgaggaaaagcacatttta 10361916  T
Q  219 tgccttcaaagggaagccattgattccaatt 249  Q
    ||||||||||||||| ||||| |||||||||    
T  10361917 tgccttcaaagggaatccattcattccaatt 10361947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 10431960 - 10432190
Alignment:
Q  19 ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt 118  Q
    ||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||| |||  |||     
T  10431960 ggtccttccgtcaagcccattgatattaactttctttattgacgacaaccaatgcatagtgtttggctctgtttccagtagttgagaacaacctgatata 10432059  T
Q  119 acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta 218  Q
     |||||||||||||||||||||| | ||||||||| |||||| ||||||  ||||||||| |||||| |||| ||| |||| |||||||||||| |||||    
T  10432060 tcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcaggacaattatgtaactccataactctaagtcgaggaaaagcaactttta 10432159  T
Q  219 tgccttcaaagggaagccattgattccaatt 249  Q
    ||||||||||||| ||||||| |||||||||    
T  10432160 tgccttcaaagggcagccattcattccaatt 10432190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10519624 - 10519408
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    ||||||||| |||||| ||||| |||| ||| |||||||||||||||||   |||   ||||||||||||||||  ||| ||||||||||||||||||||    
T  10519624 caagcccattgatattcattttttttattgaagacaaccaatgcaaagtagatgg---tgtttccaatagatgaacacaaccttttattacaatttcttc 10519528  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||| ||||||| | | | |||||||||||| ||||||  ||||||||||||||||| |||||   |||||||||||||||||||||||||||||| |||    
T  10519527 tatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaactttatagccttaagttgaggaaaagcaaattttatgccttcgaag 10519428  T
Q  230 ggaagccattgattccaatt 249  Q
    |||| ||||| |||||||||    
T  10519427 ggaatccattcattccaatt 10519408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 249
Target Start/End: Complemental strand, 10665658 - 10665449
Alignment:
Q  31 aagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttct 130  Q
    |||||||| ||| |||| ||| |||| ||||||||||||||||||||||   ||  ||||||| |||||| ||      ||||  ||| |||||||||||    
T  10665658 aagcccattgattttaactttttttattgacgacaaccaatgcaaagtg---ggacctgtttctaatagacga------ccttcaatttcaatttcttct 10665568  T
Q  131 atgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagg 230  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||    
T  10665567 atacaaggaagatggctaggcaaatgtccctttagttttggacaattacgtaactccatggctctaagtcgaggaaaagcaaattttatgccttcaaagg 10665468  T
Q  231 gaagccattgattccaatt 249  Q
    ||| ||||| |||||||||    
T  10665467 gaatccattcattccaatt 10665449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 10373774 - 10373991
Alignment:
Q  29 tcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttctt 128  Q
    |||||||||| |||||| ||||  |||| ||| ||||||||||||| |||   |||   ||||||||||||||||||||| |||  ||||||||||||||    
T  10373774 tcaagcccattgatattcatttcttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttctt 10373870  T
Q  129 ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaa 228  Q
    ||||| ||||||| | | | |||||||||||| ||||||  ||||||||||||||||  |||||   |||| ||||||||||||||||||||||||||||    
T  10373871 ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaa 10373970  T
Q  229 gggaagccattgattccaatt 249  Q
    ||||| ||||| |||||||||    
T  10373971 gggaatccattcattccaatt 10373991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10129064 - 10128848
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||||||| |||   |||   ||||||||||||||||||||| |||  |||||||||||||||    
T  10129064 caagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc 10128968  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||| ||||||| | | | |||||||||||| ||||||  |||||||| | |||||  |||||   ||||||||||||||||||||||||||||||||||    
T  10128967 tatggaaggaaggttggtgggcaaatgtccccttagttctggacaattccataactctatagccttaagttgaggaaaagcaaattttatgccttcaaag 10128868  T
Q  230 ggaagccattgattccaatt 249  Q
    |||| ||||| |||||||||    
T  10128867 ggaatccattcattccaatt 10128848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 11779922 - 11780128
Alignment:
Q  40 gatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga 139  Q
    |||||| ||||  |||| |||||||||||||||||||||   ||| |   ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  11779922 gatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaacaaccttttattacaatttcttcgatgcaagga 11780018  T
Q  140 agatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccatt 239  Q
    || | | |||||||||||||| ||||||  ||||||||||| |||| ||||| |   ||| ||||||| ||||||||||| ||||||||||||| |||||    
T  11780019 aggttggtaggcaaatgtccccttagttcaggacaattacgcaactccatagttttgagtcgaggaaatgcaaattttataccttcaaagggaaaccatt 11780118  T
Q  240 gattccaatt 249  Q
     |||||||||    
T  11780119 cattccaatt 11780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 9851878 - 9851662
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||| ||| |||   |||   ||||||||||||||||||||| |||  |||||||||||||||    
T  9851878 caagcccattgatattcattttttttattgaagacaaccaacgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc 9851782  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||| ||||||| | | | ||||||| |||| ||||||| ||||||| ||||||||  || ||   ||||||||||||||||||||||||||||||||||    
T  9851781 tatggaaggaaggttggtgggcaaatatccccttagttttggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaag 9851682  T
Q  230 ggaagccattgattccaatt 249  Q
    |||| ||||| |||||||||    
T  9851681 ggaatccattcattccaatt 9851662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10079549 - 10079333
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    |||| |||| |||||||||||| |||||||||| |||||||| ||||||   |||   ||||||||||||||  | ||| |||||||| | |||||||||    
T  10079549 caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtttccaatagattcgcacaaccttttatcataatttcttc 10079453  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||||||||||| | |||||| ||||| ||||||||||  ||||||| |  ||||| ||||| || |||| |||||||| |||| ||||| |||||||||    
T  10079452 tatgcaaggaaggtcgctaggaaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag 10079353  T
Q  230 ggaagccattgattccaatt 249  Q
    ||||||||||||||||||||    
T  10079352 ggaagccattgattccaatt 10079333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10186519 - 10186303
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    |||| |||| |||||||||||| |||||||||| |||||||| ||||||   |||   ||| ||||||||||  | ||| |||||||| | |||||||||    
T  10186519 caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtatccaatagattcgcacaaccttttatcataatttcttc 10186423  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||||||||||| |  ||||||||||| ||||||||||  ||||||| |  ||||| ||||| || |||| |||||||| |||| ||||| |||||||||    
T  10186422 tatgcaaggaaggtcactaggcaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag 10186323  T
Q  230 ggaagccattgattccaatt 249  Q
    ||||||||||||||||||||    
T  10186322 ggaagccattgattccaatt 10186303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 11771363 - 11771157
Alignment:
Q  40 gatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga 139  Q
    |||||| ||||  |||| |||||||||||||||||||||   ||| |   ||||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  11771363 gatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaacaacctttgattacaatttcttcgatgcaagga 11771267  T
Q  140 agatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccatt 239  Q
    || | | |||| |||||| || ||||||  ||||||||||| |||| ||||| |   ||| ||||||||||||||||||| |||||||| ||||||||||    
T  11771266 aggttggtaggaaaatgtacccttagttcaggacaattacgcaactccatagttttgagtcgaggaaaagcaaattttataccttcaaaaggaagccatt 11771167  T
Q  240 gattccaatt 249  Q
     |||||||||    
T  11771166 cattccaatt 11771157  T

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Target: chr3; HSP #16
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 249
Target Start/End: Complemental strand, 10034140 - 10033923
Alignment:
Q  29 tcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttctt 128  Q
    |||||||||| |||||| ||||| |||| ||| ||||||||||||| |||   |||   ||||||||||||||||||||| |||  ||||||||||| ||    
T  10034140 tcaagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttttt 10034044  T
Q  129 ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaa 228  Q
    ||||| ||||||| | | | |||||||||||| ||||||  |||||||||  |||||  |||||   |||| ||||||||||| ||||||||||||||||    
T  10034043 ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattatataactctatagccttaagtcgaggaaaagcacattttatgccttcaaa 10033944  T
Q  229 gggaagccattgattccaatt 249  Q
    ||||| ||||| |||||||||    
T  10033943 gggaatccattcattccaatt 10033923  T

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Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 9840997 - 9840784
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||||||| |||   |||   ||||||||||||||||||||| |||  ||||||||||| |||    
T  9840997 caagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaattttttc 9840901  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||| ||||||| | | | ||||||| |||| ||||||  |||||||| |||||||  |||||   ||||||||||||||||   |||||||||||||||    
T  9840900 tatggaaggaaggttggtgggcaaatatccccttagttctggacaattgcgtaactctatagccttaagttgaggaaaagca---tttatgccttcaaag 9840804  T
Q  230 ggaagccattgattccaatt 249  Q
    |||| ||||| |||||||||    
T  9840803 ggaatccattcattccaatt 9840784  T

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Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 10502722 - 10502600
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    ||||||||| |||||||  ||| || | |||||||| ||||||||||||    |||  ||||||||||||||||| ||| |||| |||||||||||||||    
T  10502722 caagcccattgatattaccttttttcaatgacgacagccaatgcaaagta---ggcggtgtttccaatagatgagcacaaccttctattacaatttcttc 10502626  T
Q  130 tatgcaaggaagatggctaggcaaat 155  Q
    |||| ||| ||| |||| ||| ||||    
T  10502625 tatgaaagaaaggtggcaaggtaaat 10502600  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 11129020 - 11129089
Alignment:
Q  91 ttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtccc 160  Q
    |||||| ||||||| ||| |||||  |||||| |||||||||| |||  |||||||||||||||| ||||    
T  11129020 ttccaacagatgaggacaacctttatttacaaattcttctatggaagagagatggctaggcaaatttccc 11129089  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 10530731 - 10530659
Alignment:
Q  88 tgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtccc 160  Q
    ||||||||||||| ||| ||| |||| ||||  ||||||||||||| |||  || |||||||| |||||||||    
T  10530731 tgtttccaatagacgagcacaaccttctatttgaatttcttctatggaagataggtggctaggaaaatgtccc 10530659  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 13163027 - 13162975
Alignment:
Q  122 atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca 174  Q
    ||||| |||||  ||||||||  |||||||||||||||||||||||| |||||    
T  13163027 atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca 13162975  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 13334951 - 13334899
Alignment:
Q  122 atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca 174  Q
    ||||| |||||  ||||||||  |||||||||||||||||||||||| |||||    
T  13334951 atttcgtctattgaaggaagactgctaggcaaatgtccctttagtttaggaca 13334899  T

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Target: scaffold0083 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 55532 - 55748
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    ||||||||| |||||| ||| | |||| ||| ||||||||||||| |||   |||   ||||||||||||||||||||| |||  |||||||||||||||    
T  55532 caagcccattgatattcattatttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc 55628  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||| ||||||| | | | |||||||||||| ||||||  ||||||| ||||||||  || ||   ||||||||||||||||||||||||||||||||||    
T  55629 tatggaaggaaggttggtgggcaaatgtccccttagttctggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaag 55728  T
Q  230 ggaagccattgattccaatt 249  Q
    |||| ||||| |||||||||    
T  55729 ggaatccattcattccaatt 55748  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 26909027 - 26908811
Alignment:
Q  30 caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc 129  Q
    ||||||||| |||||||||||||  ||  ||||||| |||||| |||||   |||   |||||||||||||||| | || ||||||||||||||||||||    
T  26909027 caagcccatggatattaattttcggtatggacgacacccaatgtaaagtagatgg---tgtttccaatagatgatagcaaccttttattacaatttcttc 26908931  T
Q  130 tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag 229  Q
    |||||||||||| | |||||||||| |||| |||||||| ||||||||| | ||||  |||| ||  ||| ||||||||| ||| || || |||||||||    
T  26908930 tatgcaaggaaggttgctaggcaaaagtccttttagttttggacaattatgcaactcaatagttctgagtcgaggaaaagaaaaattcattccttcaaag 26908831  T
Q  230 ggaagccattgattccaatt 249  Q
    ||||||||||||||||||||    
T  26908830 ggaagccattgattccaatt 26908811  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 11487164 - 11487042
Alignment:
Q  40 gatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga 139  Q
    ||||| |||||| |||| ||||||||||||||||||||    |||   ||||||||| ||||| | ||| ||| ||||   ||||| |||||||||||||    
T  11487164 gatatcaattttttttattgacgacaaccaatgcaaagcagatgg---tgtttccaaaagatgggcacaacctgttatattaattttttctatgcaagga 11487068  T
Q  140 agatggctaggcaaatgtccctttag 165  Q
    || |||||||||||||||||| ||||    
T  11487067 aggtggctaggcaaatgtccccttag 11487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 44955662 - 44955732
Alignment:
Q  88 tgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtc 158  Q
    ||||||||||||||||| |||  |||||||| |||||||||||||| ||| |||||| || ||||| ||||    
T  44955662 tgtttccaatagatgagcacaatcttttatttcaatttcttctatggaagaaagatgacttggcaagtgtc 44955732  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 827942 - 827895
Alignment:
Q  120 caatttcttctatgcaaggaagatggctaggcaaatgtccctttagtt 167  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  827942 caatttcctctatggaaggaagatggctaggcaaatgtcccttcagtt 827895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 143961 - 144013
Alignment:
Q  122 atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca 174  Q
    ||||| |||||  ||||||||  |||||||||||||||||||||||| |||||    
T  143961 atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca 144013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 152266 - 152318
Alignment:
Q  122 atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca 174  Q
    ||||| |||||  ||||||||  |||||||||||||||||||||||| |||||    
T  152266 atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca 152318  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 17851024 - 17851072
Alignment:
Q  201 gaggaaaagcaaattttatgccttcaaagggaagccattgattccaatt 249  Q
    ||||||||||||| || |||||| |||||||||||||||  ||||||||    
T  17851024 gaggaaaagcaaaattgatgcctacaaagggaagccattccttccaatt 17851072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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