View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_high_63 (Length: 242)

Name: NF11571_high_63
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_high_63
NF11571_high_63
[»] chr1 (4 HSPs)
chr1 (20-128)||(49179414-49179522)
chr1 (20-99)||(49170633-49170712)
chr1 (182-230)||(49179506-49179554)
chr1 (191-230)||(49170572-49170611)
[»] chr7 (1 HSPs)
chr7 (127-171)||(48589549-48589593)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 49179414 - 49179522
Alignment:
Q  20 tcttatgtttgtggattgtttttgttccttctttacttcgactgtagttcacaaatcttatttttgtatatgttttgcagctgtcacccgataatattaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49179414 tcttatgtttgtggattgtttttgttccttctttacttcgactgtatttcacaaatcttatttttgtatatgttttgcagctgtcacccgacaatattaa 49179513  T
Q  120 ttggaaata 128  Q
    |||||||||    
T  49179514 ttggaaata 49179522  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 49170712 - 49170633
Alignment:
Q  20 tcttatgtttgtggattgtttttgttccttctttacttcgactgtagttcacaaatcttatttttgtatatgttttgcag 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49170712 tcttatgtttgtggattgtttttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcag 49170633  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 49179506 - 49179554
Alignment:
Q  182 aatattaattggaaatacccaaattttgttcctgaatgcatttcatctc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49179506 aatattaattggaaatacccaaattttgttcctgaatgcatttcgtctc 49179554  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 49170611 - 49170572
Alignment:
Q  191 tggaaatacccaaattttgttcctgaatgcatttcatctc 230  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49170611 tggaaatacccaaattttgttcctgaatgcatttcatctc 49170572  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 48589549 - 48589593
Alignment:
Q  127 tatctacctaccctccctacccctacttcatttactcatagttgg 171  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  48589549 tatctacctaccctccctacccctacttcatttactaatagttgg 48589593  T

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