View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_65 (Length: 240)
Name: NF11571_high_65
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_65 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52270809 - 52270587
Alignment:
| Q |
1 |
tttttaaataaaattgtaaggggtctatatgtgtagatgtttttctgacaacttcagtttatacttgaaccacaagactgtttttatcagcaatacagaa |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52270809 |
tttttaaataaaattgtagggggtctatatgtgtagatgtttttctgacaacttcagtttatacttgaaccacaagattgtttttatcagcaatacagaa |
52270710 |
T |
|
| Q |
101 |
ctgtatttgaggtgattatttctgagttatcttgttttaaatatttcagtcatcttttatcggtcgagcttcaaatcaatttatgccttcttctcaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270709 |
ctgtatttgaggtgattatttctgagttatcttgttttaaatatttcagtcatcttttatcggtcgagcttcaaatcaatttatgccttcttctcaaaag |
52270610 |
T |
|
| Q |
201 |
catggatcaagcaaggttcgatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
52270609 |
catggatcaagcaaggttcgatc |
52270587 |
T |
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