View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_high_66 (Length: 240)
Name: NF11571_high_66
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_high_66 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16618052 - 16618274
Alignment:
| Q |
1 |
tttctttcaaatacttgcggtaaatggcactatttttgtttcaaatattacggattgagaaaatcaagtattaaacgggtcaaaaacctgttgcttggat |
100 |
Q |
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| T |
16618052 |
tttctttcaaatacttgcggtaaatggcgctatttttgtttcaaatattacggattgagaaaatcaagaattaaacgggtcaaaaacctgttgcttggat |
16618151 |
T |
|
| Q |
101 |
tccacatcaggtgactgttgcttgctaggtttcatgaaaatctttaagagtaattgtacgtaatcatctactttggtcgcttgatccttcatatcagtag |
200 |
Q |
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| T |
16618152 |
tgcacatcaggtgactcttgcttgttaggtttcatgaaaatctttaagagtaattgtacgtaatcatctactttggtcgcttgatccttcatatcagtag |
16618251 |
T |
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| Q |
201 |
tgatctggcttttactcagttca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
16618252 |
tgatctggcttttactcagttca |
16618274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 16630382 - 16630595
Alignment:
| Q |
10 |
aatacttgcggtaaatggcactatttttgtttcaaatattacggattgagaaaatcaagtattaaacgggtcaaaaacctgttgcttggattccacatca |
109 |
Q |
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| T |
16630382 |
aatacttgtggtaaatggcgatatttttttttcgaatattaccgattgagaaaatctagaattcaacgggccaaatacctgttgcttggattgcacatca |
16630481 |
T |
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| Q |
110 |
ggtgactgttgcttgctaggtttcatgaaaatctttaagagtaattgtacgtaatcatctactttggtcgcttgatccttcatatcagtagtgatctggc |
209 |
Q |
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| T |
16630482 |
ggtggctgttgcttgttggattgcatgaaaatcttcacaaggtattgtatgtattgatctgctttgatcgctcgatccttcatgttattagtgatctggc |
16630581 |
T |
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| Q |
210 |
ttttactcagttca |
223 |
Q |
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|||||||||||||| |
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| T |
16630582 |
ttttactcagttca |
16630595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 16639264 - 16639477
Alignment:
| Q |
10 |
aatacttgcggtaaatggcactatttttgtttcaaatattacggattgagaaaatcaagtattaaacgggtcaaaaacctgttgcttggattccacatca |
109 |
Q |
| |
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||||||| |||||||||| ||||||||||| |||||||| ||||||||| || || ||| |||||| |||| |||||||||||||||| ||||||| |
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| T |
16639264 |
aatacttatggtaaatggcgaaatttttgtttcgaatattaccaattgagaaattctagaattcaacgggccaaatacctgttgcttggattgcacatca |
16639363 |
T |
|
| Q |
110 |
ggtgactgttgcttgctaggtttcatgaaaatctttaagagtaattgtacgtaatcatctactttggtcgcttgatccttcatatcagtagtgatctggc |
209 |
Q |
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| T |
16639364 |
ggtgaccgttgcttgttggattgcatgaaaatcttcacaaggtattgtatgtattgatctgctttgatcgctcgatccttcatatcattagtgaactggc |
16639463 |
T |
|
| Q |
210 |
ttttactcagttca |
223 |
Q |
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|||||||||||||| |
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| T |
16639464 |
ttttactcagttca |
16639477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 38878751 - 38878783
Alignment:
| Q |
191 |
atatcagtagtgatctggcttttactcagttca |
223 |
Q |
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| T |
38878751 |
atatcagcagtgatctggcttttactcagttca |
38878783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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