View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_low_11 (Length: 523)

Name: NF11571_low_11
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_low_11
NF11571_low_11
[»] scaffold0110 (6 HSPs)
scaffold0110 (240-508)||(21924-22192)
scaffold0110 (308-503)||(30340-30543)
scaffold0110 (106-211)||(13663-13769)
scaffold0110 (106-211)||(21400-21506)
scaffold0110 (41-73)||(13638-13670)
scaffold0110 (41-73)||(21375-21407)
[»] chr7 (27 HSPs)
chr7 (59-206)||(17503245-17503392)
chr7 (59-317)||(17549822-17550080)
chr7 (17-187)||(19735536-19735706)
chr7 (86-180)||(1964227-1964321)
chr7 (95-201)||(8352633-8352738)
chr7 (117-206)||(2842562-2842651)
chr7 (67-314)||(8515440-8515686)
chr7 (114-316)||(1837760-1837961)
chr7 (118-206)||(8488713-8488801)
chr7 (115-218)||(48294026-48294132)
chr7 (117-226)||(584070-584182)
chr7 (115-204)||(25173480-25173569)
chr7 (117-206)||(44592100-44592189)
chr7 (115-206)||(27399762-27399853)
chr7 (17-106)||(583925-584013)
chr7 (118-206)||(38974813-38974900)
chr7 (115-193)||(21294841-21294919)
chr7 (117-206)||(48557962-48558050)
chr7 (115-230)||(48767846-48767964)
chr7 (115-206)||(8055305-8055396)
chr7 (267-316)||(19735787-19735836)
chr7 (117-184)||(43786686-43786753)
chr7 (65-115)||(48767475-48767525)
chr7 (49-120)||(2842447-2842520)
chr7 (115-192)||(3641570-3641647)
chr7 (240-317)||(17503134-17503211)
chr7 (45-109)||(27399428-27399492)
[»] chr2 (26 HSPs)
chr2 (43-206)||(25749880-25750042)
chr2 (47-206)||(42029584-42029742)
chr2 (17-118)||(21848576-21848677)
chr2 (63-147)||(27957498-27957582)
chr2 (115-206)||(21848228-21848319)
chr2 (17-118)||(37847301-37847402)
chr2 (114-206)||(37456044-37456136)
chr2 (132-192)||(44059281-44059341)
chr2 (44-123)||(39446229-39446308)
chr2 (115-192)||(2968869-2968946)
chr2 (117-205)||(10624826-10624914)
chr2 (114-206)||(27559033-27559125)
chr2 (33-206)||(28967600-28967776)
chr2 (115-191)||(37847690-37847766)
chr2 (115-194)||(3703501-3703580)
chr2 (115-206)||(12671787-12671878)
chr2 (117-187)||(12863601-12863671)
chr2 (142-230)||(11916161-11916247)
chr2 (117-206)||(12184735-12184823)
chr2 (33-118)||(19140982-19141067)
chr2 (34-118)||(2969198-2969282)
chr2 (36-118)||(12671677-12671759)
chr2 (46-122)||(12184619-12184695)
chr2 (142-317)||(39446348-39446521)
chr2 (17-80)||(12016185-12016248)
chr2 (47-87)||(3703897-3703937)
[»] chr6 (12 HSPs)
chr6 (17-206)||(29465298-29465485)
chr6 (49-314)||(27753002-27753267)
chr6 (17-206)||(31766425-31766611)
chr6 (115-206)||(6812053-6812144)
chr6 (114-206)||(12919069-12919161)
chr6 (155-206)||(17096023-17096074)
chr6 (44-118)||(10373875-10373949)
chr6 (17-118)||(6811385-6811486)
chr6 (33-118)||(28188005-28188089)
chr6 (117-180)||(19687610-19687673)
chr6 (33-118)||(24326049-24326134)
chr6 (240-292)||(6812177-6812229)
[»] chr1 (32 HSPs)
chr1 (64-206)||(46688759-46688899)
chr1 (33-153)||(5939739-5939859)
chr1 (33-162)||(50011719-50011853)
chr1 (33-206)||(28522879-28523052)
chr1 (17-117)||(15456778-15456878)
chr1 (72-206)||(26991775-26991914)
chr1 (117-206)||(30627134-30627223)
chr1 (117-206)||(45467983-45468072)
chr1 (115-192)||(23082429-23082506)
chr1 (117-206)||(49650119-49650208)
chr1 (115-206)||(6597462-6597553)
chr1 (115-206)||(27163054-27163145)
chr1 (142-206)||(39092967-39093031)
chr1 (72-206)||(35718836-35718975)
chr1 (114-180)||(38790605-38790671)
chr1 (45-118)||(27163173-27163246)
chr1 (33-118)||(45370834-45370919)
chr1 (115-206)||(2356231-2356323)
chr1 (48-118)||(13004224-13004294)
chr1 (17-120)||(1834853-1834956)
chr1 (45-118)||(18898275-18898348)
chr1 (155-192)||(22767175-22767212)
chr1 (17-118)||(39092821-39092922)
chr1 (33-120)||(12705325-12705412)
chr1 (66-118)||(31437064-31437116)
chr1 (132-184)||(37586495-37586547)
chr1 (59-118)||(52898403-52898462)
chr1 (17-106)||(26991921-26992007)
chr1 (117-175)||(47675909-47675967)
chr1 (125-194)||(44343422-44343491)
chr1 (172-205)||(50011647-50011680)
chr1 (17-120)||(47677021-47677124)
[»] chr3 (32 HSPs)
chr3 (33-230)||(25701529-25701729)
chr3 (33-206)||(47142675-47142848)
chr3 (34-206)||(46981748-46981920)
chr3 (115-205)||(1559590-1559680)
chr3 (115-206)||(31833957-31834048)
chr3 (115-206)||(32552306-32552397)
chr3 (33-150)||(32721914-32722031)
chr3 (114-316)||(23059103-23059304)
chr3 (17-123)||(1559900-1560006)
chr3 (117-226)||(19611149-19611261)
chr3 (115-192)||(1151610-1151687)
chr3 (117-206)||(55222401-55222490)
chr3 (155-316)||(38585977-38586138)
chr3 (115-201)||(37526766-37526851)
chr3 (100-169)||(7325564-7325633)
chr3 (70-147)||(40242606-40242684)
chr3 (17-114)||(1292033-1292130)
chr3 (116-201)||(14903368-14903453)
chr3 (132-316)||(28131342-28131526)
chr3 (160-204)||(1294572-1294616)
chr3 (116-206)||(5992202-5992285)
chr3 (269-317)||(40243198-40243246)
chr3 (116-195)||(3935755-3935834)
chr3 (119-206)||(13778185-13778271)
chr3 (17-118)||(38585817-38585919)
chr3 (159-206)||(48098387-48098434)
chr3 (44-118)||(28131222-28131296)
chr3 (43-120)||(48098288-48098365)
chr3 (17-118)||(33428691-33428792)
chr3 (17-120)||(1292416-1292517)
chr3 (17-106)||(19611003-19611091)
chr3 (267-316)||(47142901-47142950)
[»] chr4 (34 HSPs)
chr4 (17-206)||(56397091-56397280)
chr4 (43-206)||(37450749-37450915)
chr4 (67-226)||(44991744-44991911)
chr4 (114-316)||(13678514-13678715)
chr4 (117-206)||(12191524-12191613)
chr4 (115-204)||(38068088-38068177)
chr4 (117-226)||(51175526-51175638)
chr4 (115-192)||(36904174-36904251)
chr4 (114-206)||(5744804-5744896)
chr4 (115-206)||(27064454-27064545)
chr4 (115-206)||(27085558-27085649)
chr4 (70-194)||(4711545-4711665)
chr4 (116-218)||(38168122-38168227)
chr4 (72-226)||(38068459-38068627)
chr4 (67-193)||(40445712-40445843)
chr4 (122-226)||(17058793-17058900)
chr4 (33-118)||(36622281-36622366)
chr4 (114-190)||(13665782-13665858)
chr4 (114-201)||(30482923-30483010)
chr4 (45-148)||(49551789-49551892)
chr4 (33-205)||(45832132-45832305)
chr4 (115-192)||(19853994-19854071)
chr4 (17-106)||(51175381-51175469)
chr4 (33-201)||(31767838-31768003)
chr4 (115-205)||(56228205-56228294)
chr4 (33-118)||(38067722-38067807)
chr4 (17-106)||(38068364-38068452)
chr4 (17-120)||(40445624-40445725)
chr4 (125-181)||(34929264-34929320)
chr4 (60-118)||(27064573-27064631)
chr4 (60-118)||(27085677-27085735)
chr4 (240-313)||(37450946-37451019)
chr4 (65-109)||(36456510-36456554)
chr4 (33-109)||(56228562-56228637)
[»] chr8 (18 HSPs)
chr8 (115-315)||(7176952-7177152)
chr8 (115-317)||(22800462-22800667)
chr8 (17-206)||(1581385-1581578)
chr8 (65-206)||(14523171-14523316)
chr8 (115-206)||(11989717-11989808)
chr8 (44-115)||(45251232-45251303)
chr8 (118-192)||(12795955-12796029)
chr8 (44-118)||(7177375-7177449)
chr8 (33-118)||(13282012-13282097)
chr8 (33-118)||(22800695-22800780)
chr8 (115-206)||(8693032-8693123)
chr8 (43-118)||(29637882-29637957)
chr8 (156-206)||(5423517-5423567)
chr8 (117-206)||(12532328-12532417)
chr8 (33-118)||(12796294-12796379)
chr8 (72-180)||(43976594-43976707)
chr8 (116-206)||(13282128-13282221)
chr8 (43-118)||(41438096-41438171)
[»] chr5 (15 HSPs)
chr5 (80-201)||(4898156-4898278)
chr5 (115-206)||(31066332-31066423)
chr5 (115-205)||(565353-565443)
chr5 (115-226)||(31046367-31046481)
chr5 (115-206)||(4396221-4396312)
chr5 (240-314)||(4740334-4740408)
chr5 (116-206)||(8516926-8517016)
chr5 (156-205)||(15958740-15958789)
chr5 (44-118)||(12883523-12883597)
chr5 (115-206)||(12883183-12883274)
chr5 (115-203)||(30312968-30313056)
chr5 (17-118)||(2552691-2552790)
chr5 (115-180)||(30350411-30350476)
chr5 (118-192)||(2553196-2553270)
chr5 (45-118)||(4395654-4395727)
[»] scaffold0568 (1 HSPs)
scaffold0568 (122-226)||(726-833)
[»] scaffold0086 (2 HSPs)
scaffold0086 (117-192)||(33242-33317)
scaffold0086 (33-114)||(33569-33650)
[»] scaffold0020 (1 HSPs)
scaffold0020 (117-194)||(11490-11567)
[»] scaffold0007 (1 HSPs)
scaffold0007 (59-118)||(175295-175354)


Alignment Details
Target: scaffold0110 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 240 - 508
Target Start/End: Original strand, 21924 - 22192
Alignment:
Q  240 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaagtggtttattcaatttgttttga 339  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  21924 ttataaataagtgatgtatatatgtatggtccattgaagaagtctctgttagtggattaccattgtggatgctctaagtggtttattcaatttgttttga 22023  T
Q  340 tgtttttatggtgatgattgtggnnnnnnnaggaaaaacaaaagggtagtattggaattttgttggatttagtttggtatgagcctcttacaagatcaaa 439  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22024 tgtttttatggtgatgattgtggtttttttaggaaaaacaaaagggtagtattggaattttgttggatttagtttggtatgagtctcttacaagatcaaa 22123  T
Q  440 ggctgatagctatgctgctcaaagagctagagattttcatattggatggtaaaaattgttggctgatgt 508  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22124 ggctgataactatgctgctcaaagagctagagattttcatattggatggtaaaaattgttggcttatgt 22192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 308 - 503
Target Start/End: Original strand, 30340 - 30543
Alignment:
Q  308 atgctctaagtggtttattcaatttgtttt---gatgtttttat-----ggtgatgattgtggnnnnnnnaggaaaaacaaaagggtagtattggaattt 399  Q
    |||| ||||||||||||||||||||||| |   |||||||||||     |||||||||| |||       ||||||| ||||||||||| ||||||||||    
T  30340 atgcactaagtggtttattcaatttgttcttctgatgtttttatcttgtggtgatgattctggtttttttaggaaaagcaaaagggtaggattggaattt 30439  T
Q  400 tgttggatttagtttggtatgagcctcttacaagatcaaaggctgatagctatgctgctcaaagagctagagattttcatattggatggtaaaaattgtt 499  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30440 tgttggattttgtttggtatgagcctcttacaagatcaaaggctgataactatgctgctcaaagagctagagactttcatattggatggtaaaaattgtt 30539  T
Q  500 ggct 503  Q
    ||||    
T  30540 ggct 30543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 13663 - 13769
Alignment:
Q  106 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 204  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13663 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 13762  T
Q  205 tcgagtc 211  Q
    |||||||    
T  13763 tcgagtc 13769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 21400 - 21506
Alignment:
Q  106 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 204  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21400 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 21499  T
Q  205 tcgagtc 211  Q
    |||||||    
T  21500 tcgagtc 21506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 13638 - 13670
Alignment:
Q  41 tgggcaactaacgggtcacacgtgtaaaagaag 73  Q
    |||||||||||||||||||||||||||||||||    
T  13638 tgggcaactaacgggtcacacgtgtaaaagaag 13670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 21375 - 21407
Alignment:
Q  41 tgggcaactaacgggtcacacgtgtaaaagaag 73  Q
    |||||||||||||||||||||||||||||||||    
T  21375 tgggcaactaacgggtcacacgtgtaaaagaag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 17503392 - 17503245
Alignment:
Q  59 cacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctat 158  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||  |||    
T  17503392 cacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaagtaataaattatttttgtataattatgtaaagttactgggacttat 17503293  T
Q  159 ttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||    
T  17503292 ttaagtattttttattggagtccttattagtgtattgtcattggagtc 17503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 59 - 317
Target Start/End: Original strand, 17549822 - 17550080
Alignment:
Q  59 cacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctat 158  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||  |||    
T  17549822 cacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaagtaataaattatttttgtataattatgtaaagttactgggacttat 17549921  T
Q  159 ttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataaataagtgatg 255  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||   || || ||||||  || |||||||         ||||||||||||||||    
T  17549922 ttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatccttaatatgtaatttcattaaaaaa---ttataaataagtgatg 17550018  T
Q  256 tttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 317  Q
    | | || ||  |||||||||||||||||  ||||||| ||||  |||| |||||||| ||||    
T  17550019 tgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgctttaag 17550080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 19735536 - 19735706
Alignment:
Q  17 actatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 115  Q
    |||||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  19735536 actatataaggatcat-ctctctcatgggcaactaacgggtccgacgtgtaaaagaagtaataaaatatgtactggttggtctcacttgtaaaagaagta 19735634  T
Q  116 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatta 187  Q
    ||||||||||||| ||||||||| ||||||||||| || ||||||||||| |||  |||||| |||||||||    
T  19735635 ataaattatttttgtataatgatataaagttagtgagacctatttaagtactttttattggattccttatta 19735706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 1964321 - 1964227
Alignment:
Q  86 tattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 180  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||    
T  1964321 tattggttggtcacacttgtaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 8352633 - 8352738
Alignment:
Q  95 gtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 194  Q
    |||||| || ||||||||||||||| || ||||| | ||||||||||||||||||| ||  |||||||||||||| ||||| ||||||||||||||||||    
T  8352633 gtcccattttcaaaagaagtaataattttttttttt-taatgatgtaaagttagtgagacttatttaagtatttttcattgaagtccttattagtgtatt 8352731  T
Q  195 gtcattg 201  Q
    |||||||    
T  8352732 gtcattg 8352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 2842562 - 2842651
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| | |||||||||| || ||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  2842562 taaattatttttgtttaatgatgtacagatagtgggacatatttaaatatttttcattggagtccttattagtgtattgtcattggagtc 2842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 67 - 314
Target Start/End: Complemental strand, 8515686 - 8515440
Alignment:
Q  67 aaagaagtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagta 165  Q
    |||| ||||||||||| ||||||  ||||||||||||| |||| | |||   ||||||||||| | |||||||||||||  |||||||  ||||||||||    
T  8515686 aaaggagtaataaaatgtgtattacttggtcccacttgtaaaaaggagtggaaaattatttttgtttaatgatgtaaagacagtgggacatatttaagta 8515587  T
Q  166 ttttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacat 262  Q
    ||||  ||| |||||||||||||||||||| ||||||||||   || || ||||||| |||||| |||         ||||||||||||||||| | ||     
T  8515586 ttttttattcgagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt----aaaaattataaataagtgatgtgt-cac 8515492  T
Q  263 gtatggtccatttaagaagtctctattagtagactaccattatggatgctct 314  Q
    ||  |||||||||||||||||  ||||||   ||||||||| ||||||||||    
T  8515491 gtggggtccatttaagaagtccttattagagaactaccattgtggatgctct 8515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 114 - 316
Target Start/End: Original strand, 1837760 - 1837961
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 210  Q
    |||||||||| |||| | |||||||| ||||||||||||   |||||||||| |||  ||| |||||||||||||||||||||||||||||||   ||||    
T  1837760 taataaattacttttgtttaatgatgcaaagttagtggggcatatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagt 1837859  T
Q  211 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 310  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| |||||||||||    ||||||||||||||||    
T  1837860 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatg 1837955  T
Q  311 ctctaa 316  Q
    ||||||    
T  1837956 ctctaa 1837961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 8488801 - 8488713
Alignment:
Q  118 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||| | ||||||||||||| ||||||||  ||||||||||||||  |||| ||||||||||||||||||| ||||||||||    
T  8488801 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtc 8488713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 48294132 - 48294026
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 211  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||| |  ||||||||||   |||||    
T  48294132 aataaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtccttattagtgtacttccattggagtcaatgagtc 48294033  T
Q  212 tttaata 218  Q
    |||||||    
T  48294032 tttaata 48294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 584070 - 584182
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 213  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||| || ||||||||||| ||||||||||   ||||| |    
T  584070 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtcct 584169  T
Q  214 taatagctacttt 226  Q
    |||||| ||||||    
T  584170 taatagatacttt 584182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 25173480 - 25173569
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 204  Q
    ||||||||| |||| |||||||||||||| |||||| || ||||||||||| ||| |||| |||||  | ||||||||||||||||||||    
T  25173480 aataaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtcactgttagtgtattgtcattggag 25173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 44592100 - 44592189
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| || | ||||||||||||| || |||||  |||||||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  44592100 taaattattgttgtttaatgatgtaaagataatgggacatatttaagtacttttcattagagtccttattagtgtattgttattggagtc 44592189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 27399762 - 27399853
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| ||||  |||||||||||||| |||||| | |||||||| || ||| ||||||||||  | ||||||||||||||||||||||    
T  27399762 aataaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtcaatgttagtgtattgtcattggagtc 27399853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 583925 - 584013
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 106  Q
    |||||||||||||   ||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||| |  |||||||||||||||    
T  583925 actatataaggaccctctctctcctgggtaactaacgggtcccacgtttaaaa-aagtaataaaatatgtactacttggtcccacttgca 584013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 38974900 - 38974813
Alignment:
Q  118 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||| | ||||||||||| |||||||||  ||||||||||| ||| | || ||||||||||||||||| | |||||||||||    
T  38974900 aaattatttttgtttaatgatgtaa-gttagtggggcctatttaagtacttttctttagagtccttattagtgtactctcattggagtc 38974813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 21294841 - 21294919
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtat 193  Q
    |||||||||||| | | |||||||||||||||||| |||  ||||||| ||||||  ||||||||| ||||||||||||    
T  21294841 aataaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtctttattagtgtat 21294919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 48557962 - 48558050
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| |  |||||||||||| ||||| ||| |||||||||| ||| ||||||| || |||||| |||||| |||||||||||    
T  48557962 taaattatttttgttcaatgatgtaaagatagtgcgat-tatttaagtacttttcattggactcattattaatgtattctcattggagtc 48558050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 48767846 - 48767964
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 211  Q
    |||| |||| |||| ||||||||||||||||||||| ||  |||||||| | ||| ||||||||||| | || |||||||  ||||||||||   |||||    
T  48767846 aatatattacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcattgagtc 48767945  T
Q  212 tttaatagctactttcatt 230  Q
     |||||||  |||||||||    
T  48767946 cttaataggaactttcatt 48767964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 8055396 - 8055305
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| |||||| ||||||||||||||||||| || ||||||||  | |||  ||   | ||||| ||||||||||||||||||||||    
T  8055396 aataaattacttttatgtaatgatgtaaagttagtgagacctatttaatcactttttatcatattccttgttagtgtattgtcattggagtc 8055305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 19735787 - 19735836
Alignment:
Q  267 ggtccatttaagaagtctctattagtagactaccattatggatgctctaa 316  Q
    |||||||||||| ||||||||||||| |||||||||| ||||| ||||||    
T  19735787 ggtccatttaaggagtctctattagtggactaccattgtggatactctaa 19735836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 43786686 - 43786753
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 184  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| | ||||||||||||    
T  43786686 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttctttggagtcctta 43786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 48767475 - 48767525
Alignment:
Q  65 taaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 115  Q
    |||||||||||||||||||||||   ||||||||||||| | |||||||||    
T  48767475 taaaagaagtaataaaatatgtacaagttggtcccactttcgaaagaagta 48767525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 2842447 - 2842520
Alignment:
Q  49 taacgggtcacacgtgtaaaagaag-taataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 120  Q
    ||||||||| ||||| ||||| ||| |||||||||||||| |  ||||||||||||||| |||| |||||||||    
T  2842447 taacgggtcccacgtttaaaaaaaggtaataaaatatgtactacttggtcccacttgcataaaggagtaataaa 2842520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 3641570 - 3641647
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||||| | ||||| | ||| ||||||||| | |||||||||| |||  |||| |||| |||||||||||    
T  3641570 aataaattatttttgtttaatgctataatgttagtggggtttatttaagtacttttaattgaagtctttattagtgta 3641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 17503211 - 17503134
Alignment:
Q  240 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 317  Q
    ||||||||||||||||| | || ||  |||||||||||||||||  ||||||| ||||  |||| |||||||| ||||    
T  17503211 ttataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgctttaag 17503134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 27399428 - 27399492
Alignment:
Q  45 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 109  Q
    ||||||||  ||||| ||| ||||||||||||||||| || ||||  ||||||| ||||||||||    
T  27399428 caactaacaagtcacgcgtttaaaagaagtaataaaagatatattaattggtcctacttgcaaaa 27399492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 25750042 - 25749880
Alignment:
Q  43 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaa 142  Q
    |||||||||||| || ||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  25750042 ggcaactaacggatcccacgtgtcaaaaaagtaataaaatatgtactggttggtcccacttgcaaaataagtaataaattatttttgtataataatgtaa 25749943  T
Q  143 agttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||  |||||||||||||| || |||||| ||||||||||||||| ||||||||||    
T  25749942 agttagtgggacatatttaagtatttttca-tggagttcttattagtgtattgccattggagtc 25749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 42029742 - 42029584
Alignment:
Q  47 actaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagtt 146  Q
    |||||||||||| || | |||||||||||||||||||||||||  |||||| |||||  ||||||| |||||| |||||||| | |||||||||||||||    
T  42029742 actaacgggtcatacatttaaaagaagtaataaaatatgtattatttggtctcacttataaaagaaataataa-ttatttttgtttaatgatgtaaagtt 42029644  T
Q  147 agtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||| |||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  42029643 agttggatttatttaagtatttttcattgaagtctttattagtgtattgtcattggagtc 42029584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 21848677 - 21848576
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    |||||||||||||||  |||||| |||||||||||| |||  ||||| |||| |||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  21848677 actatataaggacattatctctcctgggcaactaacaggttccacgtttaaatgaagtaataaaatatgtattagtttgtcccacttgcaaaaaaagtaa 21848578  T
Q  117 ta 118  Q
    ||    
T  21848577 ta 21848576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 27957498 - 27957582
Alignment:
Q  63 tgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagtta 147  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||||||||||||| || |||||||||||||||    
T  27957498 tgtaaaagaagtaataaaatatatactggttagtcccaattgcaaaagaaataataaattatttttgtaaaatgatgtaaagtta 27957582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 21848319 - 21848228
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||||| | ||||||||||| |||||||||||    
T  21848319 aataaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtc 21848228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 37847301 - 37847402
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    ||||||||||||||| ||||||| | || |||||||||||  ||||| ||||||||||||||||||||||| |   ||||||||||| ||||||||||||    
T  37847301 actatataaggacattctctctcttaggaaactaacgggttccacgtttaaaagaagtaataaaatatgtactatgtggtcccacttacaaaagaagtaa 37847400  T
Q  117 ta 118  Q
    ||    
T  37847401 ta 37847402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 37456044 - 37456136
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  37456044 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 37456136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 44059281 - 44059341
Alignment:
Q  132 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  44059281 taatgacgtaaagttagtgggatctatttaagtacttttcattggagtccttattagtgta 44059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 39446229 - 39446308
Alignment:
Q  44 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta 123  Q
    ||||| |||| ||| | ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  39446229 gcaacaaacgagtctcgcgtctaaaagaagtaataaaatatgtattagttgatcccacttgcaaaagaagtaatatatta 39446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 2968946 - 2968869
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||| ||| | ||||||||||||||||||||    
T  2968946 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtacttttcgttggagtccttattagtgta 2968869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 10624826 - 10624914
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 205  Q
    |||||||||||| | |||| |||||||| ||||||||| |||||||||| |||  |||||||| ||||||||| |||| ||||||||||    
T  10624826 taaattatttttgtttaataatgtaaagatagtgggatatatttaagtacttttaattggagttcttattagtatattctcattggagt 10624914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 27559033 - 27559125
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||| ||||||| ||||||||||    
T  27559033 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattaatgtattgccattggagtc 27559125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 28967776 - 28967600
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga-agtaata----aattatttt 127  Q
    ||||||| | || |||||||||||| ||||| |||||  ||||||||||| | || |  ||||||||||||| ||||   |||||||    |||||||||    
T  28967776 ctctctcttaggtaactaacgggtcccacgtttaaaa--agtaataaaatgtatactacttggtcccacttgtaaaaatgagtaatatgtaaattatttt 28967679  T
Q  128 tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    | | ||||||||||||| || ||| |  |||||||||| ||| |||||||||| |||||| | ||||||||||||||||    
T  28967678 tgtttaatgatgtaaagataatggaacatatttaagtacttttcattggagtcattattactttattgtcattggagtc 28967600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 37847690 - 37847766
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgt 191  Q
    |||||||||||||| | ||| |||||||||| |||| |  ||||||||||||||| |||| ||||||||||||||||    
T  37847690 aataaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtccttattagtgt 37847766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 3703580 - 3703501
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 194  Q
    |||||||||||||| | |||||||||||||||||||||| |||| |||||| |||  |||| | ||||||||| ||||||    
T  3703580 aataaattatttttgtttaatgatgtaaagttagtgggacctatataagtactttttattgtaatccttattaatgtatt 3703501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 12671787 - 12671878
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||| | |||| |||||| ||||||||||||| |||   |||||| |||||| ||||||||||  |||||||||||||||||| |||||    
T  12671787 aataaatgacttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtctgtattagtgtattgtcatttgagtc 12671878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 12863671 - 12863601
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatta 187  Q
    |||||||||||| | ||| ||| ||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  12863671 taaattatttttgtttaacgatataaagttagtggggtctatttaagtatttttcattgatgtccttatta 12863601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 11916247 - 11916161
Alignment:
Q  142 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtcgagtctttaatagctactttcatt 230  Q
    ||||||||| || |||||||||||||||  ||| ||||| |||||||||||||| |||| |||||  ||| ||||||| ||||||||||    
T  11916247 aagttagtgtgagctatttaagtatttttaatttgagtctttattagtgtattgacattagagtc--gtccttaataggtactttcatt 11916161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 12184735 - 12184823
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||| ||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | |  |||||||||||||||||||||||||    
T  12184735 taaattatatttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaaat-tttattagtgtattgtcattggagtc 12184823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 19140982 - 19141067
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| || ||||||||| |||| || || ||||||||||| ||| ||||||||  |||||||||| || ||||||||||||||    
T  19140982 ctctctcctgagcaactaacaggtctcatgtttaaaagaagtattaagatatgtataagttggtcccattttcaaaagaagtaata 19141067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 2969282 - 2969198
Alignment:
Q  34 tctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||| |   || || ||||| ||||||||||||||    
T  2969282 tctctcctaggcaactaatgggtcccacgtttaaaagaagtaataaaatatgtaatatgtgatctcacttacaaaagaagtaata 2969198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 12671677 - 12671759
Alignment:
Q  36 tctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| |||||||||||| |  |||| ||||||||||| ||||||||||||  | | |||||||||  |||||||||||||    
T  12671677 tctcatgagcaactaacgggacctacgtttaaaagaagtattaaaatatgtataaggttgtcccacttttaaaagaagtaata 12671759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 12184619 - 12184695
Alignment:
Q  46 aactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaatt 122  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |  |||||| |||||||| |||| |||||||||||    
T  12184619 aactaacgggtcacatgtttaaaa-aagtaataaaatatgtactacttggtctcacttgcataaaggagtaataaatt 12184695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 317
Target Start/End: Original strand, 39446348 - 39446521
Alignment:
Q  142 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnn 238  Q
    |||||||||| |  |||||||||| |||  |||||||||||||  ||||||||||||||||||||   ||||| ||||||  || |||||||            
T  39446348 aagttagtggaacatatttaagtacttttaattggagtcctta--agtgtattgtcattggagtcattgagtccttaataagtattttcatt---aaaaa 39446442  T
Q  239 nttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 317  Q
     ||||||||||||||||| |||| || | ||||||||||| ||||  ||||| |  ||||||||  |||||||||||||    
T  39446443 attataaataagtgatgtgtacacgtgtagtccatttaagtagtccatattactgtactaccatcgtggatgctctaag 39446521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 12016185 - 12016248
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 80  Q
    ||||||||||||| | |||||||  | |||||||||||||| ||||| |||||||| |||||||    
T  12016185 actatataaggaccttctctctcccgagcaactaacgggtctcacgtttaaaagaaataataaa 12016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 3703937 - 3703897
Alignment:
Q  47 actaacgggtcacacgtgtaaaagaagtaataaaatatgta 87  Q
    ||||| ||||| ||||| |||||||||||||||||||||||    
T  3703937 actaatgggtctcacgtttaaaagaagtaataaaatatgta 3703897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 29465485 - 29465298
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    |||||||||||||   ||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||  |||| |||||||| |||    
T  29465485 actatataaggact--ctctctcatgggcaactaacgggcctcacgtgtaaaagaagtgataaaatatgtactggttggtctaacttacaaaagaaataa 29465388  T
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||| || |||| |||||||||||||| |||||| |||||||||||| ||||| |||||||||| ||||||||| ||||||||| |||||    
T  29465387 taaactaattttgtataatgatgtaaacttagtgagatctatttaagaatttttcattggagtcattattagtgaattgtcatttgagtc 29465298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 49 - 314
Target Start/End: Complemental strand, 27753267 - 27753002
Alignment:
Q  49 taacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttag 148  Q
    |||||| || ||||| ||||||||||||||||||||||| |  ||| || ||||||||||||||||||||||||| |||| | ||||| |||||||||||    
T  27753267 taacggatctcacgtttaaaagaagtaataaaatatgtactatttgatctcacttgcaaaagaagtaataaattagttttgtttaatgttgtaaagttag 27753168  T
Q  149 tgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataa 245  Q
    |||||  |||||||||| ||| |||| |||||||||||||||||||| |||| |||||   || || ||||||| |||||| |||         ||||||    
T  27753167 tgggacttatttaagtacttttcatttgagtccttattagtgtattgacatttgagtcattgaatccttaataggtacttttatt---aaaaaattataa 27753071  T
Q  246 ataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 314  Q
    ||||||||| | |||||||  | || ||||||| |||||||||||||||||||||| |||| |||||||    
T  27753070 ataagtgatatgtacatgtgagatctatttaaggagtctctattagtagactaccactatgaatgctct 27753002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 31766611 - 31766425
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    ||||||||||||  | |||||||||||| ||| |||||||  || ||||||||||||||||||||||||||  |||| ||| ||||| ||||| |||| |    
T  31766611 actatataagga--ttctctctcatgggaaaccaacgggttccatgtgtaaaagaagtaataaaatatgtacgggttagtctcacttacaaaataagtta 31766514  T
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||| |||||| |||||| ||||||||||||||||||||||||||||| | |  |||||||| |||||||||||||||||||| |||||    
T  31766513 taaataatttttgtataataatgtaaagttagtgggatctatttaagtactctttattggagt-cttattagtgtattgtcatttgagtc 31766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 6812053 - 6812144
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  6812053 aataaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtctttattagtgtattgccattggagtc 6812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 12919069 - 12919161
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||||| | |||| | | ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  12919069 taataaattatttttgtttaataaggcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 12919161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 17096074 - 17096023
Alignment:
Q  155 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  17096074 ctatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 17096023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 10373949 - 10373875
Alignment:
Q  44 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||||||| | ||||||||| |||||||||||||||||||||||   ||||||| ||||| |||||||| |||||    
T  10373949 gcaactaatgtgtcacacgtttaaaagaagtaataaaatatgtacatgttggtctcactttcaaaagaaataata 10373875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 6811385 - 6811486
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    |||||||||||||    |||||| ||| ||||||||||||  || || ||||||||  ||||||||||||||| ||| || ||||||| |||| ||||||    
T  6811385 actatataaggaccctttctctcttggacaactaacgggtatcatgtttaaaagaaaaaataaaatatgtattagtttgttccacttgtaaaataagtaa 6811484  T
Q  117 ta 118  Q
    ||    
T  6811485 ta 6811486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 28188005 - 28188089
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| || |||||||||||||| || |  |||||||||||||||||||||||   ||||||  ||||| ||||||||||||||    
T  28188005 ctctctcttgagcaactaacgggtctcatgcttaaaagaagtaataaaatatgtacaagttggt-tcactttcaaaagaagtaata 28188089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 19687610 - 19687673
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 180  Q
    |||||||||||| | ||||||||||||| || |||||  |||||||||| ||| ||||||||||    
T  19687610 taaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtc 19687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 24326049 - 24326134
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| | || ||||||||| || ||| | |||||||||||||||||||||||||   || |||||| | |||||||| |||||    
T  24326049 ctctctcctaggtaactaacggatcccacatttaaaagaagtaataaaatatgtattatatgatcccacgtacaaaagaaataata 24326134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 6812177 - 6812229
Alignment:
Q  240 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagt 292  Q
    |||||||||| |||| | ||||||| |||||||||||||||  ||||||||||    
T  6812177 ttataaataaatgatatgtacatgtgtggtccatttaagaaacctctattagt 6812229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 46688899 - 46688759
Alignment:
Q  64 gtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaag 163  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  46688899 gtaaaagaagtaataaa-tatgtactggttggtcctacttgcaaaagaagtaataaattatttttgtataatgatgtaaagttagtggg-cctatttaag 46688802  T
Q  164 tattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    || ||| |||||||||| |||||||||||||||||||||||||    
T  46688801 tacttttcattggagtcattattagtgtattgtcattggagtc 46688759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 5939739 - 5939859
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 132  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||    
T  5939739 ctctctcctgggcaactaacgggccccacgtgtaaaagaagtaataaaatatgtactggttggtcccacttgcagaagaagtaataaattatttttgtat 5939838  T
Q  133 aatgatgtaaagttagtggga 153  Q
    |||||||||||||||| ||||    
T  5939839 aatgatgtaaagttagaggga 5939859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 50011853 - 50011719
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta-----ttggttggtcccacttgcaaaagaagtaataaattatttt 127  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||    
T  50011853 ctctctcatggacaactaacgggtcgcacgcgtaaaagaagtaataaaatatgtactggtttggttggtaccacttgcaaaagaagtaataaattatttt 50011754  T
Q  128 tatataatgatgtaaagttagtgggatctatttaa 162  Q
    | ||||||||||||||||||| ||| | |||||||    
T  50011753 tgtataatgatgtaaagttagcggggtatatttaa 50011719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 28523052 - 28522879
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 132  Q
    ||||||| | ||||||||||| | | ||||||||||||||||||||||||||||| |  ||| |  ||||||||||||||||||||||||||||||  ||    
T  28523052 ctctctcttaggcaactaacgagccccacgtgtaaaagaagtaataaaatatgtactaattgatatcacttgcaaaagaagtaataaattatttttgcat 28522953  T
Q  133 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||| |||||||| || |  ||||||||  | ||| |||| |||||||||||||||||||||||||||||||    
T  28522952 aatgatataaagttaatgtggcctatttaaaaactttgcattagagtccttattagtgtattgtcattggagtc 28522879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 15456778 - 15456878
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    |||||||||||||   ||||||| |||| ||||||| |||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  15456778 actatataaggaccccctctctcctgggtaactaactggtcccacatttaaaagaagtaataaaatatgtattagttggtcccacttgcaaaagaggtaa 15456877  T
Q  117 t 117  Q
    |    
T  15456878 t 15456878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 26991914 - 26991775
Alignment:
Q  72 agtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 166  Q
    ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||| ||  ||||||||||     
T  26991914 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtgagacatatttaagtac 26991815  T
Q  167 tttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||| |||||||||||||||||||||||||| |||||||||    
T  26991814 ttttcattggagtccttattagtgtattgttattggagtc 26991775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 30627223 - 30627134
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  30627223 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcatttgagtctttattaatgtattgtcattggagtc 30627134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 45468072 - 45467983
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| | ||||||||||||| ||||||||  ||||||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  45468072 taaattatttttgtttaatgatgtaaagatagtgggacatatttaaatatttttcattggagtcattatcagtgtattgtcattggagtc 45467983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 23082429 - 23082506
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||||| | ||||| |||||||||||||   |||||||||||||||| ||||||||||||||||||||||    
T  23082429 aataaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtccttattagtgta 23082506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 49650119 - 49650208
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||| |||||||| |||||||||    
T  49650119 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattaatgtattgttattggagtc 49650208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 6597462 - 6597553
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||| | |||| |||||||||||||||||||||  | |||||||| |||| | ||||||||||||| |||||||| |||||||||||||    
T  6597462 aataaatcacttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtccttgttagtgtactgtcattggagtc 6597553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 27163145 - 27163054
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| |||| |||||| ||||||||||||||  | ||||||||| ||||| ||||||||||  | ||||||||||||||||||||||    
T  27163145 aataaattacttttgtataattatgtaaagttagtgtcacctatttaagcatttttcattggagtctctgttagtgtattgtcattggagtc 27163054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 39092967 - 39093031
Alignment:
Q  142 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||  |||||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  39092967 aagttagtgggacatatttaagtacttttaattggagtccttattattgtattgtcattggagtc 39093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 35718975 - 35718836
Alignment:
Q  72 agtaataaaatatgtattggttggtcccacttgcaaaaga-agtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 166  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||    |||||||||||| | |||| | |||||| ||||| ||  ||||||||||     
T  35718975 agtaataaaatgtgtactacttggtcccacttgtaaaaaagagtaataagtaaattatttttgtttaataaagtaaagatagtgagacatatttaagtac 35718876  T
Q  167 tttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||| |||||| |||||| ||||||||||| ||||||||||    
T  35718875 ttttcattggggtccttgttagtgtattgccattggagtc 35718836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 38790671 - 38790605
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 180  Q
    |||||||||| |||| ||||||||||||||||||||| ||  |||||||| ||||| ||||||||||    
T  38790671 taataaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtc 38790605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 27163246 - 27163173
Alignment:
Q  45 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||||||| |||| ||||| |||||||||||||||||||| ||   |||||| |||||| ||||||||||||||    
T  27163246 caactaacaggtctcacgtttaaaagaagtaataaaatatatacaagttggttccactttcaaaagaagtaata 27163173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 45370834 - 45370919
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||||||| |||| |   | ||||||||| | ||||||||||||    
T  45370834 ctctctcctaggcaactaacgggtcccacgtttaaaagaagtaataaaatttgtactatgttgtcccacttactaaagaagtaata 45370919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 2356231 - 2356323
Alignment:
Q  115 aataaattatttt-tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| ||||| || |||  |||||||||   |||| |||||||| |||||||||    
T  2356231 aataaattattttttatataatgatgtaaagtcagtggaatctttttaaatactttttattggagtctcaattaatgtattgttattggagtc 2356323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 13004294 - 13004224
Alignment:
Q  48 ctaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||| ||||| ||||| ||||||||||||| ||||||||| |   ||||||||||| ||||||||||||||    
T  13004294 ctaatgggtcccacgtttaaaagaagtaatcaaatatgtactatatggtcccacttacaaaagaagtaata 13004224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 1834853 - 1834956
Alignment:
Q  17 actatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagt 114  Q
    |||||||||||| ||| ||||||||| || |||||||||||| ||||| ||||| |||||||||||  |||| |  ||||||||||||||| |||| |||    
T  1834853 actatataaggatcat-ctctctcattggtaactaacgggtcccacgtttaaaa-aagtaataaaacgtgtactatttggtcccacttgcataaaggagt 1834950  T
Q  115 aataaa 120  Q
    ||||||    
T  1834951 aataaa 1834956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 18898348 - 18898275
Alignment:
Q  45 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||||| ||| |||||  ||||||||||||||||||||||   |||| |||||||| ||||| ||||||||    
T  18898348 caactaacgagtctcacgttcaaaagaagtaataaaatatgtacaagttgatcccactttcaaaataagtaata 18898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 22767175 - 22767212
Alignment:
Q  155 ctatttaagtattttccattggagtccttattagtgta 192  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  22767175 ctatttaagtatttttcattggagtccttattagtgta 22767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 39092821 - 39092922
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    ||||||||||| ||| || | || | |||||||||||| |  ||||| |||||||| ||||||||||| || | ||||||| ||||||||||  ||||||    
T  39092821 actatataagggcattctttttcctaggcaactaacggatttcacgtttaaaagaaataataaaatatatactagttggtctcacttgcaaacaaagtaa 39092920  T
Q  117 ta 118  Q
    ||    
T  39092921 ta 39092922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 12705412 - 12705325
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 120  Q
    ||||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||| |  |||||| |||||||| |||| |||||||||    
T  12705412 ctctctcttgggcaactaatgggtcccacgtttaaaa-aagtaataaaatgtgtactacttggtctcacttgcataaaggagtaataaa 12705325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 31437064 - 31437116
Alignment:
Q  66 aaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||| ||||||||||||||||||  |||||||| |||| ||||||||||||||    
T  31437064 aaaataagtaataaaatatgtataagttggtcctactttcaaaagaagtaata 31437116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 37586547 - 37586495
Alignment:
Q  132 taatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 184  Q
    |||||||||||||||| || ||  |||||||||||||| ||||||||||||||    
T  37586547 taatgatgtaaagttaatgagaattatttaagtatttttcattggagtcctta 37586495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 52898403 - 52898462
Alignment:
Q  59 cacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||| ||||||||||||||||||||||||  ||||||| ||||| ||||| || |||||    
T  52898403 cacgtttaaaagaagtaataaaatatgtataagttggtcacactttcaaaataaataata 52898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 26992007 - 26991921
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 106  Q
    |||||||||||||   ||||||| |||  |||||||||| | ||||| ||||| |||||||||||| ||||||  |||||||||||||||    
T  26992007 actatataaggacc--ctctctcctggataactaacgggcctcacgtttaaaa-aagtaataaaatgtgtattacttggtcccacttgca 26991921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 47675967 - 47675909
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattg 175  Q
    ||||||| |||| | ||||||||||||| ||||||||  |||||||||||||| |||||    
T  47675967 taaattacttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattg 47675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 44343422 - 44343491
Alignment:
Q  125 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 194  Q
    |||| ||||||| || ||||||| || ||  |||||||||||||| |||||||||||||| |||| ||||    
T  44343422 ttttgtataatgttgcaaagttaatgagacatatttaagtatttttcattggagtccttactagtatatt 44343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 50011680 - 50011647
Alignment:
Q  172 attggagtccttattagtgtattgtcattggagt 205  Q
    |||||||||||||||| |||||||||||||||||    
T  50011680 attggagtccttattattgtattgtcattggagt 50011647  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 47677124 - 47677021
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagta 115  Q
    |||||||||||||   ||||||| |||| ||||||||| || ||||| ||||| | |||||||||| |||| |  |||||| || ||||| |||||||||    
T  47677124 actatataaggactctctctctcttgggtaactaacggatcccacgtttaaaa-aggtaataaaatgtgtactatttggtctcatttgcataaagaagta 47677026  T
Q  116 ataaa 120  Q
    |||||    
T  47677025 ataaa 47677021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 25701729 - 25701529
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 132  Q
    ||||||||| | |||||||||| || ||||||||||||||||||||||||||||   |||| |||||||||||||||||| ||||||||||||||| |||    
T  25701729 ctctctcatcgacaactaacggatcccacgtgtaaaagaagtaataaaatatgttccggtttgtcccacttgcaaaagaaataataaattatttttgtat 25701630  T
Q  133 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcat 229  Q
    ||| |||||||||| ||| ||  |||||||||| |||  |||| ||| ||||||||||||||||||||||||||   || || ||||||| |||||||||    
T  25701629 aataatgtaaagttggtgagacttatttaagtacttttaattgaagttcttattagtgtattgtcattggagtctttgaatccttaataggtactttcat 25701530  T
Q  230 t 230  Q
    |    
T  25701529 t 25701529  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 47142675 - 47142848
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 132  Q
    ||||||| | |||||||||| | || ||||| ||||||||||||||||||||||| |  ||||||   ||||||||| |||||||||||||||||| | |    
T  47142675 ctctctcctaggcaactaacagatctcacgtttaaaagaagtaataaaatatgtactatttggtcttccttgcaaaataagtaataaattatttttgttt 47142774  T
Q  133 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    | |||||||||||||||| || ||||||||||| ||| ||||||||||||||||||| | ||||||||||||||    
T  47142775 agtgatgtaaagttagtgagacctatttaagtagttttcattggagtccttattagtatcttgtcattggagtc 47142848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 46981748 - 46981920
Alignment:
Q  34 tctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatata 133  Q
    ||||||||| |||||||||||||| ||| |  ||||||| |||||||| |||||   ||||||| | | | ||||||||||||| ||||| |||| ||||    
T  46981748 tctctcatgagcaactaacgggtctcacattcaaaagaaataataaaacatgtagaagttggtctcgcgttcaaaagaagtaatgaattacttttgtata 46981847  T
Q  134 atgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||||||| ||  ||||||  || ||| || || ||  ||||||||||||||||||||||||||    
T  46981848 atgatgtaaagttagtgagacttatttagatacttttcaatgaagctcttattagtgtattgtcattggagtc 46981920  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 1559680 - 1559590
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 205  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||||| |||| |||| ||||||||||||||| |||||||||    
T  1559680 aataaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagttcttattagtgtattgacattggagt 1559590  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 31833957 - 31834048
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||| | | |||||||||    
T  31833957 aataaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagttcttattagtgtacttttattggagtc 31834048  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 32552306 - 32552397
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||| || ||||| | |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  32552306 aataatttttttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtccttattagtgtactctcattggagtc 32552397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 32722031 - 32721914
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 132  Q
    ||||||| || ||||||||||| ||  || | ||||||||||||||||||||||||  |||||||  |||| ||||||| ||||||||||| ||||  ||    
T  32722031 ctctctcctgagcaactaacggatcctacatttaaaagaagtaataaaatatgtataagttggtcttactttcaaaagatgtaataaattacttttgaat 32721932  T
Q  133 aatgatgtaaagttagtg 150  Q
    ||||||||||||||||||    
T  32721931 aatgatgtaaagttagtg 32721914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 316
Target Start/End: Original strand, 23059103 - 23059304
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 210  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| ||||||||||||||| |||| ||||||||||   ||||    
T  23059103 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtggattgccattggagtcattgagt 23059202  T
Q  211 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 310  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| ||||| |||||    ||||||||||||||||    
T  23059203 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctttattaaggaactaccattatggatg 23059298  T
Q  311 ctctaa 316  Q
    ||||||    
T  23059299 ctctaa 23059304  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 1560006 - 1559900
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    |||||||||||||   || ||||||||||||||| | |||| ||||| ||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||    
T  1560006 actatataaggaccatctttctcatgggcaactagcaggtctcacgtttaaaaaaagtaataaaatatgtactagttggtcacacttgcaacagaagtaa 1559907  T
Q  117 taaatta 123  Q
    || ||||    
T  1559906 tatatta 1559900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 19611149 - 19611261
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 213  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | | ||||||||||||||||||||||||||   ||||| |    
T  19611149 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattggagtcattgagtcct 19611248  T
Q  214 taatagctacttt 226  Q
    |||||| ||||||    
T  19611249 taataggtacttt 19611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 1151687 - 1151610
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||    
T  1151687 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgta 1151610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 55222401 - 55222490
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||  |||||||||||||||||||||||||    
T  55222401 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaattttcattggagtatttattagtgtattgtcattggagtc 55222490  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 316
Target Start/End: Original strand, 38585977 - 38586138
Alignment:
Q  155 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataaataagt 251  Q
    |||||||||||| ||  ||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||         ||||||||||||    
T  38585977 ctatttaagtatatttgattggagtctttattagtgtattgtcattggagtcattgagtccttaatagctactttcatt---aaaaaattataaataagt 38586073  T
Q  252 gatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 316  Q
     | || |||| ||   ||||||||||| ||||| | |||||  ||||||||| ||||||||||||    
T  38586074 aacgtgtacaagtgaagtccatttaaggagtctatgttagtgtactaccattgtggatgctctaa 38586138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 37526851 - 37526766
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 201  Q
    ||||||||||||| |||||||||||||||||||||   || |||||||||||||| ||||| ||||  ||||||| |||||||||||    
T  37526851 aataaattatttt-atataatgatgtaaagttagtaaaatatatttaagtatttttcattgaagtctctattagtttattgtcattg 37526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 7325633 - 7325564
Alignment:
Q  100 acttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 169  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||  ||||||| ||||||    
T  7325633 acttgtaaaagaagtaataaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatatttt 7325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 40242606 - 40242684
Alignment:
Q  70 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta-tttttatataatgatgtaaagtta 147  Q
    ||||||||||||||||||||  ||  |||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||    
T  40242606 gaagtaataaaatatgtattaattaatcccacttacaaaagaagtaattaattattttttgtataataatgtaaagtta 40242684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 1292130 - 1292033
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 114  Q
    |||||||||||||    |||||| | |||||||||||| || ||||| ||||||||||||||||||||||| |  |||||| || || ||||||||||    
T  1292130 actatataaggactctatctctcctaggcaactaacggatcccacgtttaaaagaagtaataaaatatgtactatttggtctcatttccaaaagaagt 1292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 14903368 - 14903453
Alignment:
Q  116 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 201  Q
    ||||||||||||| | |||||||| ||||||||||||   ||||||  || ||| |||| ||||| ||||||||||||||||||||    
T  14903368 ataaattatttttgtttaatgatgcaaagttagtggggcatatttatatacttttcatttgagtcattattagtgtattgtcattg 14903453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 316
Target Start/End: Original strand, 28131342 - 28131526
Alignment:
Q  132 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag---tcgagtctttaatagctactttca 228  Q
    ||||||||||||||||||| ||  |||||||||| |||  || ||||||||| ||||||||||  ||||||||   ||| ||||||||||| |||||| |    
T  28131342 taatgatgtaaagttagtgagacttatttaagtaatttttatgggagtccttgttagtgtattaccattggagtcatcgggtctttaatagatactttta 28131441  T
Q  229 ttnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 316  Q
    ||         ||||||||||||||||| ||||||   | |||||||||| |||| ||||||  ||| ||||||| | ||||||||||    
T  28131442 tt--aaaaaaattataaataagtgatgtgtacatgcgggatccatttaaggagtccctatta-aagattaccattgtagatgctctaa 28131526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 1294572 - 1294616
Alignment:
Q  160 taagtattttccattggagtccttattagtgtattgtcattggag 204  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggag 1294616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 5992285 - 5992202
Alignment:
Q  116 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||||| ||||||||||||| ||||||||  ||| |       || ||||||||||||||||||||||||||||||| ||||    
T  5992285 ataaattatttttatttaatgatgtaaagatagtgggacatatct-------tttcattggagtccttattagtgtattgtcattgaagtc 5992202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 40243198 - 40243246
Alignment:
Q  269 tccatttaagaagtctctattagtagactaccattatggatgctctaag 317  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  40243198 tccatttaaggagtctctattagtagattaccattgtggatgctctaag 40243246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 3935834 - 3935755
Alignment:
Q  116 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattg 195  Q
    ||||||||||||| | ||||||||||||| || || ||  |||||||||| ||| ||||||||||||| |||| ||||||    
T  3935834 ataaattatttttgtttaatgatgtaaagataatgagacatatttaagtacttttcattggagtccttgttagagtattg 3935755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 13778185 - 13778271
Alignment:
Q  119 aattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||| |||||||||||||||||| ||||||| ||  |||||||| | ||| |||||||||| || ||| |||||||||||| |||||    
T  13778185 aattacttttatataatgatgtaa-gttagtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtc 13778271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 38585817 - 38585919
Alignment:
Q  17 actatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaa-gaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 114  Q
    |||||||||||| ||| |||||||||  | |||||||||||| ||||| ||||| ||| |||||||||||||||| |||||||  | || ||||||||||    
T  38585817 actatataaggatcat-ctctctcataagaaactaacgggtcgcacgtttaaaaagaaataataaaatatgtattagttggtcttatttacaaaagaagt 38585915  T
Q  115 aata 118  Q
    ||||    
T  38585916 aata 38585919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 48098387 - 48098434
Alignment:
Q  159 ttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  48098387 ttaagtattttttattggagtccttattaatgtattgtcattggagtc 48098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 28131222 - 28131296
Alignment:
Q  44 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||||||| ||||  ||||| ||||| || |||||| |||||||||  ||||||||||||||||||||| |||||    
T  28131222 gcaactaatgggttccacgtttaaaataaataataatatatgtattacttggtcccacttgcaaaagaaataata 28131296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 48098288 - 48098365
Alignment:
Q  43 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaa 120  Q
    ||||||||||| |||  |||| |||||||| |||||||||||||| |  || |||| ||||| |||||||||||||||    
T  48098288 ggcaactaacgagtcctacgtttaaaagaactaataaaatatgtactacttagtcctacttgtaaaagaagtaataaa 48098365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 33428691 - 33428792
Alignment:
Q  17 actatataagg-acatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 115  Q
    ||||||||||| |||| ||||||| | | ||| ||||||||| || || ||||| |||||||||||||||||||   ||||||||| |  ||||||||||    
T  33428691 actatataaggtacat-ctctctcctagacaaataacgggtctcatgtttaaaaaaagtaataaaatatgtattatgtggtcccacatagaaaagaagta 33428789  T
Q  116 ata 118  Q
    |||    
T  33428790 ata 33428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 1292416 - 1292517
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagta 115  Q
    |||||||||||||   ||||||| | || |||||||||||| ||| | ||||| |||||||||||| |||| |  ||||||||||||||| |||| ||||    
T  1292416 actatataaggacc--ctctctcctaggtaactaacgggtcccacatttaaaa-aagtaataaaatgtgtactaattggtcccacttgcataaaggagta 1292512  T
Q  116 ataaa 120  Q
    |||||    
T  1292513 ataaa 1292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 19611003 - 19611091
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 106  Q
    ||||||||||||| | ||||||| |  | |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  19611003 actatataaggaccttctctctcttaagtaactaacgggtctcacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 19611091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 47142901 - 47142950
Alignment:
Q  267 ggtccatttaagaagtctctattagtagactaccattatggatgctctaa 316  Q
    |||||||||||| ||||||| ||||| |||||||||| |||||| |||||    
T  47142901 ggtccatttaaggagtctcttttagtggactaccattgtggatggtctaa 47142950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 56397280 - 56397091
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    ||||||||||||  | |||| |||| ||||||||||||||||||| |||||||||| |||||||||||| | | |||| ||| ||||| ||||||||| |    
T  56397280 actatataaggattttctctttcataggcaactaacgggtcacacatgtaaaagaaataataaaatatgcagtagttgatccgacttgtaaaagaagtta 56397181  T
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| |||||||||||||||||| ||  |  |||||||||||||| ||||| |||||||||| | |||||||||||||||||    
T  56397180 taaattatttttgtataatgatgtaaagttaatgacacatatttaagtatttttcattgaagtccttattcgcgtattgtcattggagtc 56397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 37450749 - 37450915
Alignment:
Q  43 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaa 142  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||    
T  37450749 ggcaactaacggaccccacgtgtaaaagaagtaataaaatatgtattggttgatcccacttgcaaaagaagtaataaattatttttgggtaatgatgtaa 37450848  T
Q  143 agttagtgggatctatttaagtat----tttccattggagtccttattagtgtattgtcattggagtc 206  Q
    | ||||||| | ||||||||||||    |||  |||| |||| | |||||| ||||||||||||||||    
T  37450849 aattagtgg-acctatttaagtatattttttttattgaagtcatcattagtatattgtcattggagtc 37450915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 44991911 - 44991744
Alignment:
Q  67 aaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctattta 161  Q
    |||| ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||||||  ||||||    
T  44991911 aaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaattatttttgtttaatgatgtaaagatagtgggacatattta 44991812  T
Q  162 agtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 226  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||   ||||| ||||||| ||||||    
T  44991811 agtatttttcattggagtccttattagtgtattgccattggagtcattgagtccttaataggtacttt 44991744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 13678715 - 13678514
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 210  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||||||||||||||||||   ||||    
T  13678715 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagt 13678616  T
Q  211 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 310  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| |||||||||||    ||||||||||||||||    
T  13678615 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatg 13678520  T
Q  311 ctctaa 316  Q
    ||||||    
T  13678519 ctctaa 13678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 12191524 - 12191613
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12191524 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtatttttcattggagtccttattagtgtattgtcattggagtc 12191613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 38068088 - 38068177
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 204  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  ||||||||||||||||||||| | |||||||||    
T  38068088 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtactctcattggag 38068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 51175526 - 51175638
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 213  Q
    |||||||||||  | ||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||| ||||||| ||||||||||   ||||| |    
T  51175526 taaattattttcgtttaatgatgtaaagatagtgggacatatttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtcct 51175625  T
Q  214 taatagctacttt 226  Q
    |||||| ||||||    
T  51175626 taataggtacttt 51175638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 36904174 - 36904251
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||||||| || |||||||||||||||||||    
T  36904174 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtccttattagtgta 36904251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 5744896 - 5744804
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  5744896 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 5744804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 27064545 - 27064454
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27064545 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 27085649 - 27085558
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27085649 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 4711545 - 4711665
Alignment:
Q  70 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 169  Q
    |||||||||||||||||| |  ||  ||| ||||| ||||||| ||||||||||||||| | |||||||||||||||||||  |  ||||||||    ||    
T  4711545 gaagtaataaaatatgtactacttaatccaacttgtaaaagaaataataaattatttttgtttaatgatgtaaagttagtgcaacatatttaag----tt 4711640  T
Q  170 ccattggagtccttattagtgtatt 194  Q
     ||||||||||||||||| ||||||    
T  4711641 tcattggagtccttattaatgtatt 4711665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 38168227 - 38168122
Alignment:
Q  116 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtct 212  Q
    ||||||||||||| | |||||||||||| ||||||||   |||||||||| ||| ||||||||||||||||| ||||||   |||||||||   ||||||    
T  38168227 ataaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtccttattaatgtatttctattggagtcattgagtct 38168128  T
Q  213 ttaata 218  Q
    ||||||    
T  38168127 ttaata 38168122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 38068459 - 38068627
Alignment:
Q  72 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtggga------tctattt 160  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||||||||| | ||||||||||||| ||||||||      | |||||    
T  38068459 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttctttaatgatgtaaagatagtgggacatatttatattt 38068558  T
Q  161 aagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 226  Q
    ||||| ||| | |||||||||||||||||||||||||||| |||||   ||||| ||||||| ||||||    
T  38068559 aagtacttttctttggagtccttattagtgtattgtcattagagtcattgagtccttaataggtacttt 38068627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 40445712 - 40445843
Alignment:
Q  67 aaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctattta 161  Q
    |||| ||||||||||| |||| |  |||||||||||||  ||||| |||||    ||||| |||||| | ||||||||||||| |||||||   ||||||    
T  40445712 aaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaatcatttttgtttaatgatgtaaagatagtgggccatattta 40445811  T
Q  162 agtattttccattggagtccttattagtgtat 193  Q
    |||||||| | |||||||||||||||||||||    
T  40445812 agtatttttcgttggagtccttattagtgtat 40445843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 17058900 - 17058793
Alignment:
Q  122 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 218  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  17058900 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 17058801  T
Q  219 gctacttt 226  Q
    ||||||||    
T  17058800 gctacttt 17058793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 36622366 - 36622281
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| || |||||||||||||| ||| | ||||||||||||| |||||| |||  |||||||||||||  |||||||||||||    
T  36622366 ctctctcctgagcaactaacgggtcccacatttaaaagaagtaatcaaatatatataagttggtcccacttttaaaagaagtaata 36622281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 13665858 - 13665782
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtg 190  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||    
T  13665858 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtg 13665782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 30483010 - 30482923
Alignment:
Q  114 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 201  Q
    |||||||||| |||| |||||||||||||||||| || || |||||||| ||||||  |||||||||  ||||| |||||| ||||||    
T  30483010 taataaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtctctattaatgtattatcattg 30482923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 49551892 - 49551789
Alignment:
Q  45 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaag 144  Q
    |||||||| |||| || ||  |||||||||||||||||||||||  |||| ||| |||| | ||| || ||||||||||||||| | |||| ||||||||    
T  49551892 caactaacaggtctcatgttcaaaagaagtaataaaatatgtatgagttgatcctactttctaaataactaataaattatttttgtgtaataatgtaaag 49551793  T
Q  145 ttag 148  Q
    ||||    
T  49551792 ttag 49551789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 45832305 - 45832132
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaataa----attatttt 127  Q
    ||||||| |||| |||||||||||  ||||| ||||| |||||||||||| |||| |  ||||||||||||  |||| | ||||||||    ||||||||    
T  45832305 ctctctcctgggtaactaacgggttccacgtttaaaa-aagtaataaaatgtgtactacttggtcccacttttaaaaagcagtaataagtaaattatttt 45832207  T
Q  128 tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 205  Q
    | | |||||   ||||| |||| | |  ||||||||||  || ||||||||||||||||||||||||| |||||||||    
T  45832206 tgtttaatg---taaagatagtagaacatatttaagtacctttcattggagtccttattagtgtattgccattggagt 45832132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 19853994 - 19854071
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||||| | | |||||||||||||||||||  ||||||||||| |||  |||  ||||||||||||||||    
T  19853994 aataaattatttttgtttgatgatgtaaagttagtggggcctatttaagtactttttattaaagtccttattagtgta 19854071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 51175381 - 51175469
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 106  Q
    |||||||||||||   |||||||||||| |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  51175381 actatataaggaccctctctctcatgggtaactaacgggtcccacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 51175469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 31768003 - 31767838
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga-agtaata----aattatttt 127  Q
    ||||||| |||| |||||||||||| ||||| ||||| |||||||||||| |||| |  || |||||||||| ||||   |||||||    |||||||||    
T  31768003 ctctctcctgggtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactacttagtcccacttgtaaaaatgagtaataggtaaattatttt 31767905  T
Q  128 tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 201  Q
    | | |||| |||||||  ||||       ||||||||| ||| ||||||||||| |||||||||||||||||||    
T  31767904 tgtttaatcatgtaaatatagt-------atttaagtacttttcattggagtccatattagtgtattgtcattg 31767838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 56228294 - 56228205
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 205  Q
    ||||||||| |||| | ||||||||||| ||||||||  ||||||||| || ||| ||||||||||||||||| |||| |  |||||||||    
T  56228294 aataaattagttttgtttaatgatgtaa-gttagtggtgtctatttaaatacttttcattggagtccttattaatgtacttccattggagt 56228205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 38067722 - 38067807
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| | || ||||||||| |  ||||| ||||||||||||||||||||||| |   ||||||| ||| ||||||||||||||    
T  38067722 ctctctcctaggtaactaacggatttcacgtttaaaagaagtaataaaatatgtaatatgtggtcccgcttacaaaagaagtaata 38067807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 38068364 - 38068452
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 106  Q
    ||||||||||||| | ||||||| |||| |||||||| ||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  38068364 actatataaggacct-ctctctcctgggtaactaacgagtctcacgtttaaaaaaaataataaaatgtgtactacttggtcccacttgca 38068452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 40445624 - 40445725
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagta 115  Q
    |||||||||||||   |||||||||| | |||||||||||| ||||| ||||| |||||||||||| |||| || |||  |||||||||| |||| ||||    
T  40445624 actatataaggact--ctctctcatgagtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactgcttgaccccacttgcataaaggagta 40445720  T
Q  116 ataaa 120  Q
    |||||    
T  40445721 ataaa 40445725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 34929264 - 34929320
Alignment:
Q  125 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcc 181  Q
    ||||||||||| ||||||||||||||| |  |||||| ||||||| |||||||||||    
T  34929264 ttttatataataatgtaaagttagtggaacatatttaggtatttttcattggagtcc 34929320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 27064631 - 27064573
Alignment:
Q  60 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27064631 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27064573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 27085735 - 27085677
Alignment:
Q  60 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27085735 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27085677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 37450946 - 37451019
Alignment:
Q  240 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctc 313  Q
    |||||||||||||| ||  ||||||  | || |||||||||||| |||||| | |||||||||| |||||||||    
T  37450946 ttataaataagtgacgtgcacatgtgggatctatttaagaagtccctattaatggactaccattgtggatgctc 37451019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 36456554 - 36456510
Alignment:
Q  65 taaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 109  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||||    
T  36456554 taaaagaagtaataaaatatgtataagttggtctcactttcaaaa 36456510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 56228637 - 56228562
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 109  Q
    ||||||| || | |||||||||||| ||||| ||||| ||||||||||||||||| |  |||| |||||||| ||||    
T  56228637 ctctctcctgagtaactaacgggtcccacgtttaaaa-aagtaataaaatatgtactacttggccccacttgtaaaa 56228562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 115 - 315
Target Start/End: Complemental strand, 7177152 - 7176952
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 211  Q
    |||||||||||||| ||||||| ||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||||||||   |||||    
T  7177152 aataaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcattgagtc 7177053  T
Q  212 tttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 311  Q
     ||||||| ||||||||||         |||||||||| |||||| |||| ||  ||||||| |||||||||  |||||||  |||| ||||||||||||    
T  7177052 cttaatagatactttcatt---aaaaaattataaataaatgatgtgtacacgtggggtccatataagaagtccttattagtgtactatcattatggatgc 7176956  T
Q  312 tcta 315  Q
    ||||    
T  7176955 tcta 7176952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 115 - 317
Target Start/End: Complemental strand, 22800667 - 22800462
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 211  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||||||||||||||||||   |||||    
T  22800667 aataaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtccctattagtgtattgtcattggagtcattgagtc 22800568  T
Q  212 tttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 311  Q
     |||||||  | |||  ||         |||||||||| |||||| |||||||   ||||||||||| |||  ||||||||  ||||||||| |||||||    
T  22800567 cttaatagacattttttttattaaaaaattataaataaatgatgtgtacatgtggagtccatttaaggagttcctattagtgtactaccattgtggatgc 22800468  T
Q  312 tctaag 317  Q
    ||||||    
T  22800467 tctaag 22800462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 1581385 - 1581578
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga-agta 115  Q
    |||||||||||||   ||||||| |||| |||||||||||| | ||| ||||| |||||||||||| |||| |  ||||||||||||| ||||   ||||    
T  1581385 actatataaggaccctctctctcctgggtaactaacgggtctcgcgtttaaaa-aagtaataaaatgtgtactacttggtcccacttgtaaaaatgagta 1581483  T
Q  116 ataa----attatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||    ||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||||||||||||||| |||||||||||| |||||    
T  1581484 ataagtaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattggagtccttattaatgtattgtcattcgagtc 1581578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 14523316 - 14523171
Alignment:
Q  65 taaaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatt 159  Q
    |||||||| |||||||||||| | |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| |||||| |  ||||    
T  14523316 taaaagaa-taataaaatatgcactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtggaacatatt 14523218  T
Q  160 taagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||| ||| || |||||||||||||||||||||||||||| ||||    
T  14523217 taagtacttttcagtggagtccttattagtgtattgtcattgaagtc 14523171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 11989808 - 11989717
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| ||||| ||||||||||||| |||||| ||  |||||||| | ||| ||||||||||| | ||||||||||||||||||||||    
T  11989808 aataaattacttttacataatgatgtaaaattagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtc 11989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 45251303 - 45251232
Alignment:
Q  44 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 115  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||| | ||||||| |||||||||||||||||    
T  45251303 gcaactaacgggtcccacgtttaaaagaagtaataaaacatgtactagttggtctcacttgcaaaagaagta 45251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 12796029 - 12795955
Alignment:
Q  118 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    ||||||||||| | |||||||||||||||||||||  ||||||||||| ||| |||||||||||||| |||||||    
T  12796029 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtccttactagtgta 12795955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 7177449 - 7177375
Alignment:
Q  44 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||| ||||||||| |||||||||||||    
T  7177449 gcaactaacggatctcacgtttaaaagaattaataaaatatgtactagttgatcccacttgtaaaagaagtaata 7177375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 13282012 - 13282097
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| | |||||||||||| ||  || ||||||||||||||||| ||||||| |  |||||| ||||||||||||||||||||    
T  13282012 ctctctcgtaggcaactaacggatcttacatgtaaaagaagtaataatatatgtactacttggtctcacttgcaaaagaagtaata 13282097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 22800780 - 22800695
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| || ||||||||||| || ||||   |||||||||||||||||||||||  ||||| ||||||| ||||||||||||||    
T  22800780 ctctctcctgagcaactaacggatcccacgatcaaaagaagtaataaaatatgtataagttgggcccactttcaaaagaagtaata 22800695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 8693123 - 8693032
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| |||| |||||| ||||||||||||| ||| ||||||||  | ||| ||||||| |||||||| || ||||||||||| ||||    
T  8693123 aataaattacttttgtataataatgtaaagttagtaggacctatttaacaacttttcattggaatccttattggtttattgtcattgaagtc 8693032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 29637957 - 29637882
Alignment:
Q  43 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||||||||||  || |||||||||||||||||||||||||| ||||   ||||||| ||| ||||||||||||||    
T  29637957 ggcaactaacgaatctcacgtgtaaaagaagtaataaaatatatattatgtggtcccgcttacaaaagaagtaata 29637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 5423517 - 5423567
Alignment:
Q  156 tatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  5423517 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 5423567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 12532417 - 12532328
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||||||| | ||||||||||||| ||||||||  | |||||||| ||| |||| || || |||||||||||||  ||||||||||    
T  12532417 taaattatttttgtttaatgatgtaaagatagtgggacatgtttaagtacttttcattagaatctttattagtgtattaccattggagtc 12532328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 12796379 - 12796294
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||| | ||||||||||| ||| ||  | |||| ||| |||||||||||||| | |||| |||||||||||||||||||||||    
T  12796379 ctctctcctaggcaactaacgagtctcaaatttaaaggaattaataaaatatgtactagttgatcccacttgcaaaagaagtaata 12796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 43976594 - 43976707
Alignment:
Q  72 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtgggatctatttaagtat 166  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||| ||||| | ||||||||||||| ||||||||| ||||||||||     
T  43976594 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtcaattgtttttgtttaatgatgtaaagatagtgggatatatttaagtac 43976693  T
Q  167 tttccattggagtc 180  Q
    ||| ||||||||||    
T  43976694 ttttcattggagtc 43976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 13282128 - 13282221
Alignment:
Q  116 ataaattatttttatataatgatgtaaagttagtgggatctatttaagta---ttttccattggagtccttattagtgtattgtcattggagtc 206  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||| ||   |||  ||| ||||| ||  |||||||||||||||| |||||    
T  13282128 ataaattagttttgtttaatgatgtaaagttagtgggatctatttaattactttttgtcatgggagttctggttagtgtattgtcattagagtc 13282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 41438096 - 41438171
Alignment:
Q  43 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||||||||| |||  | ||| |||||||||||||||||||||||||   ||||||||||| ||||| ||||||||    
T  41438096 ggcaactaaccggtaccgcgtttaaaagaagtaataaaatatgtattatgtggtcccacttacaaaataagtaata 41438171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 4898156 - 4898278
Alignment:
Q  80 aatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagt 179  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||| ||  |||||||||| ||| |||||||||    
T  4898156 aatatgcactggttggtcccacttgtaaaagaagtaataaattatttttgtataataatgtaaagctagtgagacttatttaagtacttttcattggagt 4898255  T
Q  180 -ccttattagtgtattgtcattg 201  Q
     ||||||||||||||||||||||    
T  4898256 cccttattagtgtattgtcattg 4898278  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 31066423 - 31066332
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  31066423 aataaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtc 31066332  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 565353 - 565443
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 205  Q
    |||||||||||||| ||||||||| |||| ||||||| |  |||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  565353 aataaattatttttttataatgatctaaatttagtggaacatatttaagtacttttcaatggagtccttattagtgtattgtcattggagt 565443  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 31046481 - 31046367
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 211  Q
    ||||||||| |||| |||||||||||||||||||| |||  ||||||||||||||  |||| | ||| ||||||||||||||| || |||||   |||||    
T  31046481 aataaattacttttgtataatgatgtaaagttagtcggacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcattgagtc 31046382  T
Q  212 tttaatagctacttt 226  Q
     ||||||| ||||||    
T  31046381 cttaatagatacttt 31046367  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 4396221 - 4396312
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||| |||| ||||||||||||||||||||| |  ||||||||||||||| ||||  ||||||| ||||| || || ||||||||||    
T  4396221 aataaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcattaaagtccttgttagtatactgccattggagtc 4396312  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 4740408 - 4740334
Alignment:
Q  240 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 314  Q
    ||||||||||||||||| ||||  |  ||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  4740408 ttataaataagtgatgtgtacacatgaggtccatttaaaaagtttctattagtggactaccattatggatgctct 4740334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 8517016 - 8516926
Alignment:
Q  116 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 206  Q
    ||||||||||||| | ||||||||||||| |||||| |  ||||||||||||||  |||||||| | | |||||||||||||||| |||||    
T  8517016 ataaattatttttgtttaatgatgtaaagatagtggaacatatttaagtattttttattggagttcatgttagtgtattgtcattagagtc 8516926  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 15958789 - 15958740
Alignment:
Q  156 tatttaagtattttccattggagtccttattagtgtattgtcattggagt 205  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15958789 tatttaagtacttttcattggagtccttattagtgtattgtcattggagt 15958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 12883597 - 12883523
Alignment:
Q  44 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||| |  ||| || ||||| ||||||||||||||    
T  12883597 gcaactaacgggtcccacgtttaaaaaaagtaataaaatatgtactatttgatctcacttacaaaagaagtaata 12883523  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 12883274 - 12883183
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta-ttgtcattggagtc 206  Q
    ||||||||||||||   ||||||| |||||| |||||| | |||||||||| ||| ||||||||| |||||||||||| || |||||||||||    
T  12883274 aataaattatttttgcttaatgatataaagtaagtggggtatatttaagtacttttcattggagt-cttattagtgtacttctcattggagtc 12883183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 30313056 - 30312968
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattgga 203  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||  ||||||| ||||  |||||||    
T  30313056 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatattagtatatttccattgga 30312968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 2552691 - 2552790
Alignment:
Q  17 actatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 116  Q
    ||||||||||||  | ||||||| | ||||||||||| ||| ||||| || |||||||| |||||||||||||   ||||||| |||  |||||||||||    
T  2552691 actatataagga--ttctctctcctaggcaactaacgagtcccacgtttagaagaagtagtaaaatatgtattatgtggtcccgcttataaaagaagtaa 2552788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 30350476 - 30350411
Alignment:
Q  115 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 180  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||    
T  30350476 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 30350411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 2553196 - 2553270
Alignment:
Q  118 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||   |||||||||||||||||||  || |||||||||| ||| || || | ||||||||||||||    
T  2553196 aaattatttttggttaatgatgtaaagttagtgaaatatatttaagtacttttcactgaaatccttattagtgta 2553270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 4395654 - 4395727
Alignment:
Q  45 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||||||  ||| ||||| ||||||||||||||||| |||||||  |||||  ||  ||||||||||||||||    
T  4395654 caactaacatgtctcacgtttaaaagaagtaataaaacatgtattaattggtttcatctgcaaaagaagtaata 4395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 833 - 726
Alignment:
Q  122 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 218  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  833 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 734  T
Q  219 gctacttt 226  Q
    ||||||||    
T  733 gctacttt 726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 33317 - 33242
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 192  Q
    |||||||||||||| ||||||||||||| ||||| || ||||||||||| ||| ||||| ||||||| | ||||||    
T  33317 taaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtccttgtaagtgta 33242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 33650 - 33569
Alignment:
Q  33 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 114  Q
    |||||||||  |||||||||||||   |||| ||||||||||||||||||||| | |  || |||||| || ||||||||||    
T  33650 ctctctcataagcaactaacgggttcaacgtttaaaagaagtaataaaatatgcactatttagtcccatttacaaaagaagt 33569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 11567 - 11490
Alignment:
Q  117 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 194  Q
    |||||||||||| | ||||||||||||| |  |||||  |||||||||| ||| |||| |||||||||||||| ||||    
T  11567 taaattatttttgtttaatgatgtaaagattatgggacatatttaagtacttttcatttgagtccttattagtatatt 11490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 175295 - 175354
Alignment:
Q  59 cacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 118  Q
    ||||| ||||||||||||||||||||||| |  ||| |||||||  ||||||||||||||    
T  175295 cacgtttaaaagaagtaataaaatatgtactatttgatcccactaccaaaagaagtaata 175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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