View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_13 (Length: 522)
Name: NF11571_low_13
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 40482405 - 40481877
Alignment:
| Q |
1 |
ggtggatacaggatgcagtttgagtggattattagaatatattggaaggttttgattaagtgagagtgt---------atgtagcttacatttatttgta |
91 |
Q |
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| T |
40482405 |
ggtggatacaggatgcagtttgagtggattattagaatatattggaaagttttgattaagtgaaagtgtgggatatacatgtagcttacatttatttgta |
40482306 |
T |
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| Q |
92 |
agttggttaaggtgaaaagaattcgacaaaagcgttgtagagcacgccatggaaagtggtcttaggaagctcaactacaaactttgttgtgaaacttttg |
191 |
Q |
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| T |
40482305 |
agttggttaaggtgaaaagaattcgacaaaagcgttgtagagcacgccatggaaagtggtcttaggaagctcaactacaaactttgttgtgaaacttttg |
40482206 |
T |
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| Q |
192 |
tttacctgattgtcatcacacgggtatagcttgagaaaacgacaaatcagatgtgttacgcagcagaagagtttggaaccacgagaatcaacaaaggtcg |
291 |
Q |
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| T |
40482205 |
tttacctgattatcatcacactggtatagcttgagaaaacgacaaatcagatgtgttacgcagcagaagagtttggaaccacgagaatcaacaaaggtcg |
40482106 |
T |
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| Q |
292 |
tggcatattctgtggcataaaaattctttcaagctatattactaagcataaatgaaaagtatatacttctaaattactttcgaatttatcaaacaatcaa |
391 |
Q |
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| T |
40482105 |
tggcatattctgtggcataaaaattctttcaagc--tattactaagcataaatgaaaagtatatacttctaaattactttcgaatttatcaaacaatcaa |
40482008 |
T |
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| Q |
392 |
tcaattaaattgattaatcatataaattaagtaaaaataagcttgtgatgccatatacaaaattattcagcaggtttgttttcataaaatattgaataaa |
491 |
Q |
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| T |
40482007 |
tcaattaaattgattaatcatataaattaagtaaaaataagcttgtgaagccatatacaaaattattcagcaggtttgttttcataaaatattgaataaa |
40481908 |
T |
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| Q |
492 |
ttatcaacaattctaaatctctaaattaatt |
522 |
Q |
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| T |
40481907 |
ttatcaacaattctaaatctctaaattaatt |
40481877 |
T |
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