View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_low_17 (Length: 489)
Name: NF11571_low_17
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 5547995 - 5547541
Alignment:
| Q |
20 |
gtgtacagttggcaatgtgagtttgaaagtggtatctgaatgtggtgtgcgagtacacccattggg-agggacttgcttaggtaggctatgatccataaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5547995 |
gtgtacagttggcaatgtgagtttgaaagtggtatctgaatgtggtgtgcaagtacacccattggggagggacttgcttaggtaggctatgatccataaa |
5547896 |
T |
|
| Q |
119 |
atttcatcaaagtttatagttttgattcatatgtgagagtaggaannnnnnn-ggtcacatatgaaaatggtggaccctgttcattatgtaactccgctc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5547895 |
atttcatcaaagtttatagttttgattcatatgtgagagttggaattttttttggtcacatatgaaaatggtggaccctgttcattatgtaactccgctc |
5547796 |
T |
|
| Q |
218 |
gtaatatcgatattattgaatgcacatttttgtttggattcagatttaaaactttatagatgtgagtttaagttttagacggtacttcattttttacttg |
317 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5547795 |
gaaatatcgatattattgaatgcacatttttgtttggattcagatataaaactttatagatatgagtttaggttttagacggtacttcattttttacttg |
5547696 |
T |
|
| Q |
318 |
aaagtttagataagttgaacttcgaaactcatcagggtcagagagatcttaaggttcaacgagttttaacaaaagtcctaacaaatcatttatcagagag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5547695 |
aaagtttagataagttgaacttcgaaactcatcagggtcagagagatcttaaggttcaacgagctttaacaaaagtccttacaaatcatttatcaaagag |
5547596 |
T |
|
| Q |
418 |
atcatgacattgacaatcgaagttgaacttcaaactttgtgtataaatcaacttc |
472 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5547595 |
atcatgacattgacaatcgaagttgaactccaaactttgtggataaatcaacttc |
5547541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University