View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_low_22 (Length: 438)

Name: NF11571_low_22
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_low_22
NF11571_low_22
[»] chr8 (2 HSPs)
chr8 (8-427)||(9028636-9029056)
chr8 (8-121)||(22573135-22573248)
[»] chr7 (6 HSPs)
chr7 (18-124)||(23318950-23319056)
chr7 (8-114)||(41482422-41482528)
chr7 (13-114)||(2333993-2334094)
chr7 (9-125)||(39594631-39594747)
chr7 (8-104)||(24429707-24429803)
chr7 (18-116)||(39644909-39645007)
[»] chr4 (7 HSPs)
chr4 (8-121)||(45413772-45413885)
chr4 (8-116)||(2183300-2183408)
chr4 (15-116)||(33235803-33235904)
chr4 (8-116)||(36625538-36625646)
chr4 (60-115)||(19181467-19181522)
chr4 (7-125)||(33451319-33451437)
chr4 (8-121)||(26635263-26635376)
[»] chr1 (7 HSPs)
chr1 (8-121)||(26793757-26793870)
chr1 (18-112)||(45792690-45792784)
chr1 (18-114)||(50004908-50005004)
chr1 (8-115)||(49236173-49236280)
chr1 (8-121)||(6768262-6768375)
chr1 (8-93)||(19806758-19806843)
chr1 (8-124)||(9383229-9383345)
[»] chr3 (2 HSPs)
chr3 (8-128)||(40416941-40417061)
chr3 (60-121)||(48936355-48936414)
[»] chr5 (1 HSPs)
chr5 (8-124)||(34731266-34731382)
[»] chr2 (3 HSPs)
chr2 (18-113)||(7670385-7670480)
chr2 (63-121)||(16567767-16567825)
chr2 (12-124)||(40054469-40054581)
[»] chr6 (2 HSPs)
chr6 (9-90)||(129102-129183)
chr6 (8-93)||(8547437-8547522)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 9028636 - 9029056
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  9028636 tatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgttggtgca 9028735  T
Q  108 ccaaacaaccgatttaagcagatcatatcccaccaaacgggccgaaaatggcaaactttgtccatttttagacaatgcagctgcaattccactcccttct 207  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9028736 ccaaacaaccgatttaagcagatcatatcccaccaaacaagccgaaaatggcaaactttgtccatttttagacaatgcagctgcaattccactgccttct 9028835  T
Q  208 ctaaaaatctgagaacagcagtaattccagctccttgctatctctttacaattttttcaaataattcttaagcaccgaggaacctcaacatcttgattga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  9028836 ctaaaaatctgagaacagcagtaattccagctccttgctatctctttacaatttttccaaataattcttaagtaccgaggaacctcaacatcttgattga 9028935  T
Q  308 aaaccctaaccactaggtgtgaatcattgctaatatttcgtacaaatccaccaataaatctagcttaatattacac-attaaattagtatgagaatactt 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9028936 aaaccctaaccactaggtgtgaatcattgccaatatttcgtacagatccaccaataaatctagcttaatattacacaattaaattagtatgagaatactt 9029035  T
Q  407 ttatactactcttagtttctt 427  Q
    |||||||||||||||||||||    
T  9029036 ttatactactcttagtttctt 9029056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 22573248 - 22573135
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    ||||| |||| ||||||| ||||||| || | ||||||||||||||||||||||||||||||||| ||| ||||| || ||||| | | |||||||| ||    
T  22573248 tatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgca 22573149  T
Q  108 ccaaacaaccgatt 121  Q
    ||||||||| ||||    
T  22573148 ccaaacaacggatt 22573135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 23318950 - 23319056
Alignment:
Q  18 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaacc 117  Q
    ||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||  ||||||||||     
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaaca 23319049  T
Q  118 gatttaa 124  Q
    |||||||    
T  23319050 gatttaa 23319056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 41482422 - 41482528
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||| ||||||| || | ||| ||| ||||||| | | ||||||| |||||||||||||||||| ||||||| | |||||||| ||    
T  41482422 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgca 41482521  T
Q  108 ccaaaca 114  Q
    |||||||    
T  41482522 ccaaaca 41482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 2333993 - 2334094
Alignment:
Q  13 ggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaa 112  Q
    ||||||||||| | |||||||||  | ||| ||| ||||| | | |||||||||||||||||||||||||||| |||||| || || ||||| |||||||    
T  2333993 ggttgctaaccaaccaaaaaccagagataaaaataacaaaaggtgaataggataggattaaaaataggtttaagttatccaatcctattggtgcaccaaa 2334092  T
Q  113 ca 114  Q
    ||    
T  2334093 ca 2334094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 39594747 - 39594631
Alignment:
Q  9 atcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacac 108  Q
    |||| |||||||||||||||||||| || | ||| ||||||||||| | |||| |||| |||||  ||||||||||| ||| | |||  | ||||| |||    
T  39594747 atcatgttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcac 39594648  T
Q  109 caaacaaccgatttaag 125  Q
    |||||||| ||||||||    
T  39594647 caaacaacggatttaag 39594631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 24429803 - 24429707
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggt 104  Q
    |||||||||||||||||| ||||||| || | ||| ||| ||||||| | | || |||||||||| |||||| ||||||||||| | |||| |||||    
T  24429803 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattttctattggt 24429707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 39645007 - 39644909
Alignment:
Q  18 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaac 116  Q
    |||||||| ||||||| || | ||| ||| ||||||| | | ||||||||||||| |||| ||||||| ||||||| |||| ||||  |||||||||||    
T  39645007 ctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaac 39644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 45413772 - 45413885
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||| ||||||| || | ||| ||| |||||||||  ||||||||||||   |||||||||||| ||||||| | || ||||| ||    
T  45413772 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctattggtgca 45413871  T
Q  108 ccaaacaaccgatt 121  Q
    ||||||||||||||    
T  45413872 ccaaacaaccgatt 45413885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 2183408 - 2183300
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||| ||||||  || | ||| ||| |||||||||  |||||||||||||  ||||  |||||| ||||||| |||| ||||| ||    
T  2183408 tatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggtgca 2183309  T
Q  108 ccaaacaac 116  Q
    |||||||||    
T  2183308 ccaaacaac 2183300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 33235803 - 33235904
Alignment:
Q  15 ttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaaca 114  Q
    |||||||| |||||||||  || | ||| |||||||||||||||||||||||||||||| || ||||| || ||||  | |||| ||||| |||||| ||    
T  33235803 ttgctaactcatcaaaaattaaggataataattacaaaggttcaataggataggattaagaacaggttaaacttattattttctattggtgcaccaagca 33235902  T
Q  115 ac 116  Q
    ||    
T  33235903 ac 33235904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 36625538 - 36625646
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    ||||| |||||||||||| ||||||  || | | ||||||||||||| | ||||||||||||||   ||||||||||| ||||| ||| || || || ||    
T  36625538 tatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatcatatcctattagtgca 36625637  T
Q  108 ccaaacaac 116  Q
    |||||||||    
T  36625638 ccaaacaac 36625646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 19181467 - 19181522
Alignment:
Q  60 taggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaa 115  Q
    ||||||||||||| |||||||||||| ||||| |||  ||||||| ||||||||||    
T  19181467 taggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaa 19181522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 33451437 - 33451319
Alignment:
Q  7 ttatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtac 106  Q
    |||||| |||| ||||||||||||||| || | | | ||||||||||| | |||||||||| | ||  ||||||||||  ||||| |||  | ||||| |    
T  33451437 ttatcatgttgttaacccatcaaaaactaaggattataattacaaaggatgaataggatagaagtagtaataggtttattttatcatatcatattggtgc 33451338  T
Q  107 accaaacaaccgatttaag 125  Q
    ||||||||||  |||||||    
T  33451337 accaaacaacgaatttaag 33451319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 26635263 - 26635376
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||| ||||||| || | ||||||| | |||||   | |||||||| |||  ||||||||| || ||||| |||  ||||||| ||    
T  26635263 tatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggtgca 26635362  T
Q  108 ccaaacaaccgatt 121  Q
    ||||| ||| ||||    
T  26635363 ccaaaaaacggatt 26635376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 26793870 - 26793757
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||| ||||||| ||   ||| ||| ||||||||| | ||||||||||||| ||||| |||||| ||||||| |||| ||||| ||    
T  26793870 tatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgca 26793771  T
Q  108 ccaaacaaccgatt 121  Q
    ||||||||| ||||    
T  26793770 ccaaacaacggatt 26793757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 45792690 - 45792784
Alignment:
Q  18 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaa 112  Q
    |||||||| ||||||| || | ||||||||||||||| ||||||||||||||||| ||| | ||| || ||||| | |||||||||| |||||||    
T  45792690 ctaacccaccaaaaactaaggataagaattacaaaggctcaataggataggattagaaacatgttaaacttatcattttctgttggtgcaccaaa 45792784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 50004908 - 50005004
Alignment:
Q  18 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaaca 114  Q
    |||||||| ||||||| || | ||| ||| ||||||| | | ||||||||||||| |||||||||||||||||||| || | ||||| |||||||||    
T  50004908 ctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaaca 50005004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 49236280 - 49236173
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||| |||||||||| | || |||| | |||||||   ||||||||||    ||||| |||||| ||||||| |||| ||||| ||    
T  49236280 tatcaggttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggataggaaatgaaatatgtttaatttatccttttctattggtgca 49236181  T
Q  108 ccaaacaa 115  Q
    ||||||||    
T  49236180 ccaaacaa 49236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 6768375 - 6768262
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    ||||||||| |||||||| ||||||  || | ||| ||| |||||||||  |||| |||||||   ||||| |||||| ||||| | |||| ||||||||    
T  6768375 tatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcattttctattggtaca 6768276  T
Q  108 ccaaacaaccgatt 121  Q
    ||||||||| ||||    
T  6768275 ccaaacaacagatt 6768262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 19806758 - 19806843
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcct 93  Q
    |||||||||| ||||||| ||||||| || | | ||||  ||||||  | ||||||||||||||| |||||||||||| |||||||    
T  19806758 tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcct 19806843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9383229 - 9383345
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||||||||||  || | | | ||| ||||||| | | ||||||| ||||| |||| ||||||| ||||||  | || ||||| ||    
T  9383229 tatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctattggtgca 9383328  T
Q  108 ccaaacaaccgatttaa 124  Q
    ||||||||  |||||||    
T  9383329 ccaaacaatggatttaa 9383345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 40417061 - 40416941
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||| | |||||||||| | ||||||| | ||||| |   |||||||||||||||||||  ||||| ||||| | |||||||| | ||    
T  40417061 tatcaggttgctaaccaaacaaaaaccaaggataagaataataaagggttggtaggataggattaaaaatatatttaatttatcattttctgttgatgca 40416962  T
Q  108 ccaaacaaccgatttaagcag 128  Q
    ||||||||| |||| ||||||    
T  40416961 ccaaacaacggattgaagcag 40416941  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 48936355 - 48936414
Alignment:
Q  60 taggataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaaccgatt 121  Q
    ||||||||||||||||| ||||||||||||||   | |||||||| ||||||||||| ||||    
T  48936355 taggataggattaaaaacaggtttaaattatc--ttcctgttggtgcaccaaacaacggatt 48936414  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 34731382 - 34731266
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtaca 107  Q
    |||||||||||||||||| | ||||| || | | | ||| ||||||| |  ||||||||||||||| ||||||||||  ||||||| | || ||||| ||    
T  34731382 tatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgca 34731283  T
Q  108 ccaaacaaccgatttaa 124  Q
    ||||||||  |||||||    
T  34731282 ccaaacaagggatttaa 34731266  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 7670480 - 7670385
Alignment:
Q  18 ctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaaac 113  Q
    |||||||| ||||||  || | ||||||||||||| | ||||||||||||||||| ||| ||||| || ||||| | |||| ||||| ||||||||    
T  7670480 ctaacccaccaaaaattaaggataagaattacaaaagctcaataggataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 16567767 - 16567825
Alignment:
Q  63 gataggattaaaaataggtttaaattatcctattctgttggtacaccaaacaaccgatt 121  Q
    |||||||||| ||||||||| || ||||||| |||||||||| ||||||||||| ||||    
T  16567767 gataggattagaaataggttaaacttatccttttctgttggtgcaccaaacaacggatt 16567825  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 40054469 - 40054581
Alignment:
Q  12 aggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcctattctgttggtacaccaa 111  Q
    |||||||||||||| | ||||| || | | | ||| ||||||| |  ||||||||||||||| ||||||||||  ||||| | |||| ||||| ||||||    
T  40054469 aggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcattttctattggtgcaccaa 40054568  T
Q  112 acaaccgatttaa 124  Q
    ||||  |||||||    
T  40054569 acaagagatttaa 40054581  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 129102 - 129183
Alignment:
Q  9 atcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattat 90  Q
    |||| ||||||| |||||||||||| || | ||| ||| ||||||| | |||| |||||||||||||||  |||||| ||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttat 129183  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 8547437 - 8547522
Alignment:
Q  8 tatcaggttgctaacccatcaaaaaccaatgttaagaattacaaaggttcaataggataggattaaaaataggtttaaattatcct 93  Q
    ||||| |||||||||||| ||||||| ||   ||| ||| ||||||| | |||| |||| ||||| |||||||||||| |||||||    
T  8547437 tatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcct 8547522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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