View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_24 (Length: 417)
Name: NF11571_low_24
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 16087524 - 16087805
Alignment:
| Q |
16 |
attctaacttctaagatgctatcatagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaacc |
115 |
Q |
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| T |
16087524 |
attctaacttctaagatgctatcatagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaacc |
16087623 |
T |
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| Q |
116 |
aagtttaaaataatatttcactaattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16087624 |
aagtttaaaataatatttcactaattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcacgttaa |
16087723 |
T |
|
| Q |
216 |
cttgtctcaaacacattttgctcaaaataatagtttaaaaaaccaagatcacaatttgaacggtagaaattttaaaatcaacacaa |
301 |
Q |
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| T |
16087724 |
cttgtctcaaacacattttgctcaaaataatagtt--aaaaaccaagatcacaatttg-atggtagaaa-tttaaaatcaacacaa |
16087805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 345
Target Start/End: Original strand, 38643027 - 38643343
Alignment:
| Q |
39 |
atagttctcatttatacacacaca------aaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaaataatatt |
132 |
Q |
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| T |
38643027 |
atagttctcatttatacacacacacaaaaaaaaatgttaaaaaggaattctcctactataaatatcacatattcatgagaaccaagactaaaataatatt |
38643126 |
T |
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| Q |
133 |
tcact-aattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaacttgtctcaaacacat |
231 |
Q |
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| T |
38643127 |
tcactaaattaaactttatcaaaa-atgacatagtaagtattccacatctaataaaatatttcaatctgtttatttcactataatttgtttcaaacgtat |
38643225 |
T |
|
| Q |
232 |
tttgctcaaaataatagtttaaaaaaccaagatcacaatttgaacggtagaaa----ttttaaaatcaacacaaaagtccatcttcattaataacaagct |
327 |
Q |
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|||||||||| ||||||||||| | | ||||| |||||| || |||||||| ||||||||| | |||||||||||||||||||| || ||| || |
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| T |
38643226 |
tttgctcaaagtaatagtttaagagatcaagagtgcaattttaatggtagaaaacagatttaaaatccatacaaaagtccatcttcattactaccaaact |
38643325 |
T |
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| Q |
328 |
atcgtgatcataacaaca |
345 |
Q |
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||||| || |||| |||| |
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| T |
38643326 |
atcgtaataataataaca |
38643343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 19974514 - 19974422
Alignment:
| Q |
40 |
tagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaaataatattt |
133 |
Q |
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|||| |||||| ||||||||| ||||| |||||||| ||||||||||||| |||||| || ||| ||||||| ||||| |||||| |||||||| |
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| T |
19974514 |
tagtcctcattcatacacaca-aaaatcgttaaaaaagaattctcccactgtaaataccacatactcatgagcaccaaatttaaattaatattt |
19974422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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