View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_3 (Length: 841)
Name: NF11571_low_3
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 284 - 841
Target Start/End: Original strand, 3331950 - 3332507
Alignment:
| Q |
284 |
ttgaagttgttgaatagaagaaccatcatcttcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
383 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331950 |
ttgaagttgttgaatagaagaaccatcatcatcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
3332049 |
T |
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| Q |
384 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaa |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332050 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaa |
3332149 |
T |
|
| Q |
484 |
gaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagccccaggagaagccggttgccttagtgtcacgtttgtaaccgtccc |
583 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332150 |
gaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagctccaggagaagccggttgccttagtgtcacgtttgtaaccgtccc |
3332249 |
T |
|
| Q |
584 |
tgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttgacactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagtt |
683 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332250 |
tgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttgacactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagtt |
3332349 |
T |
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| Q |
684 |
ttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttcttgtcattgaatcgg |
783 |
Q |
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| T |
3332350 |
ttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttcttgtcattgaatcgg |
3332449 |
T |
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| Q |
784 |
tgtcgccaccggaaccacctcctccggattctaccttggggctaaaatctgtgctgaa |
841 |
Q |
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| T |
3332450 |
tgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgtgctgaa |
3332507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 3331661 - 3331906
Alignment:
| Q |
4 |
aagaacctcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatatcatcatgatcaata |
103 |
Q |
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| T |
3331661 |
aagaacctcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatgtcatcatgatcaata |
3331760 |
T |
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| Q |
104 |
cggagaacgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggaggcatagcttgaaaa |
203 |
Q |
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| T |
3331761 |
cggagaacgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggatgcatagcttgaaaa |
3331860 |
T |
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| Q |
204 |
agtggagcagttgaatctcctaaaagctgttgttgttgttgctgaa |
249 |
Q |
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| T |
3331861 |
agtggagcagttgaatctcctaaaagctgttgttgttgttgctgaa |
3331906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 39960017 - 39959944
Alignment:
| Q |
369 |
acaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaata |
442 |
Q |
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| T |
39960017 |
acaacaggtcctgaagcaatcaaagcaccaactacagcacctccaacaacttgtccttgagcacccgctaaata |
39959944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 690 - 770
Target Start/End: Original strand, 13212814 - 13212894
Alignment:
| Q |
690 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttctt |
770 |
Q |
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| T |
13212814 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttctt |
13212894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 16579014 - 16578946
Alignment:
| Q |
371 |
aacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
439 |
Q |
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| T |
16579014 |
aacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
16578946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 720 - 768
Target Start/End: Original strand, 32803230 - 32803278
Alignment:
| Q |
720 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
768 |
Q |
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| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 720 - 768
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
720 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
768 |
Q |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 733 - 768
Target Start/End: Original strand, 32809703 - 32809738
Alignment:
| Q |
733 |
tgtttttggatccagctggtcttcctcttggtcttc |
768 |
Q |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttc |
32809738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 760
Target Start/End: Complemental strand, 46200964 - 46200911
Alignment:
| Q |
707 |
tgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctct |
760 |
Q |
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| T |
46200964 |
tgtgatgataataggtggttttggtttgttttttgagccaggtggacgtcctct |
46200911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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