View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_low_35 (Length: 355)

Name: NF11571_low_35
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_low_35
NF11571_low_35
[»] chr8 (3 HSPs)
chr8 (1-339)||(30049252-30049590)
chr8 (1-339)||(7162205-7162543)
chr8 (1-67)||(30045121-30045187)
[»] chr4 (2 HSPs)
chr4 (1-339)||(3945506-3945844)
chr4 (1-69)||(3941377-3941445)
[»] chr7 (2 HSPs)
chr7 (1-339)||(39949586-39949924)
chr7 (1-68)||(39953978-39954045)
[»] chr3 (3 HSPs)
chr3 (1-339)||(22365134-22365472)
chr3 (1-67)||(22361019-22361085)
chr3 (210-274)||(22135200-22135264)
[»] chr5 (2 HSPs)
chr5 (34-339)||(196458-196763)
chr5 (34-69)||(200837-200872)
[»] chr2 (1 HSPs)
chr2 (1-67)||(1330569-1330635)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 30049590 - 30049252
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30049590 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctag 30049491  T
Q  101 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049490 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 30049391  T
Q  201 ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049390 ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 30049291  T
Q  301 cacaccatagcacaattgattcctcttgtacatgattca 339  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  30049290 cacaccatagcacaattggttcctcttgtacatgattca 30049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 7162543 - 7162205
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  7162543 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccag 7162444  T
Q  101 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 200  Q
    |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7162443 cttgcttcttagctccatgaacttggcactagcaagtgccttttttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctcca 7162344  T
Q  201 ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7162343 ttctgttcagcttctcttatagcatgaaatttgacattgatatgctttgctcttccatgttgaattggatttttggcagttgctatagctgatttgttgt 7162244  T
Q  301 cacaccatagcacaattgattcctcttgtacatgattca 339  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7162243 cacaccatagcacaattggttcctcttgtatatgattca 7162205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30045187 - 30045121
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045187 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca 30045121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 3945844 - 3945506
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3945844 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctag 3945745  T
Q  101 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945744 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 3945645  T
Q  201 ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945644 ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 3945545  T
Q  301 cacaccatagcacaattgattcctcttgtacatgattca 339  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  3945544 cacaccatagcacaattggttcctcttgtacatgattca 3945506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3941445 - 3941377
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941445 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact 3941377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 39949586 - 39949924
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag 100  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  39949586 acataagcaataaagtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccag 39949685  T
Q  101 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39949686 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 39949785  T
Q  201 ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39949786 ttttgttcagcttctcttatagcatgaaattttacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 39949885  T
Q  301 cacaccatagcacaattgattcctcttgtacatgattca 339  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  39949886 cacaccatagcacaattggttcctcttgtacatgattca 39949924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39953978 - 39954045
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacac 68  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  39953978 acataagcaataaagtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacac 39954045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 22365472 - 22365134
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||    
T  22365472 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttatctggaatactcccag 22365373  T
Q  101 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22365372 cttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctcca 22365273  T
Q  201 ttttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22365272 ttctgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgt 22365173  T
Q  301 cacaccatagcacaattgattcctcttgtacatgattca 339  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22365172 cacaccatagcacaattggttcctcttgtacatgattca 22365134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22361085 - 22361019
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22361085 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca 22361019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
Q  210 gcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt 274  Q
    ||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||| |||||||||    
T  22135264 gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt 22135200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 34 - 339
Target Start/End: Original strand, 196458 - 196763
Alignment:
Q  34 attcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactagg 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  196458 attcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactagg 196557  T
Q  134 aagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  196558 aagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttg 196657  T
Q  234 acattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtacat 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  196658 acattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacat 196757  T
Q  334 gattca 339  Q
    ||||||    
T  196758 gattca 196763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 200837 - 200872
Alignment:
Q  34 attcagaaaagttttataggtcaattagtcaacact 69  Q
    ||||||||||||||||||||||||||||||||||||    
T  200837 attcagaaaagttttataggtcaattagtcaacact 200872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1330635 - 1330569
Alignment:
Q  1 acataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca 67  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1330635 acataagcaatagagtaacataaacaataaagtattcagacaagttttataggtcaattagtcaaca 1330569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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