View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_low_36 (Length: 347)

Name: NF11571_low_36
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_low_36
NF11571_low_36
[»] chr1 (6 HSPs)
chr1 (214-334)||(23735925-23736045)
chr1 (42-205)||(23707603-23707766)
chr1 (215-334)||(23618955-23619074)
chr1 (215-334)||(23650300-23650419)
chr1 (227-329)||(23626472-23626574)
chr1 (227-329)||(23708198-23708300)
[»] chr3 (6 HSPs)
chr3 (55-196)||(54140207-54140348)
chr3 (42-136)||(52807771-52807865)
chr3 (215-334)||(52807008-52807127)
chr3 (215-275)||(54141120-54141180)
chr3 (146-205)||(52807614-52807673)
chr3 (277-334)||(52806922-52806979)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 23736045 - 23735925
Alignment:
Q  214 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccattt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23736045 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcaatccattt 23735946  T
Q  314 gatacattagcacttcatctc 334  Q
    |||||||||||||||||||||    
T  23735945 gatacattagcacttcatctc 23735925  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 23707603 - 23707766
Alignment:
Q  42 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatc 141  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  23707603 ctgcagctgtctttttaccctaaaatttgaacacagcgttactgaaattttgaagcaaattctaggagatttggaaccattaacaaacttcaactatatc 23707702  T
Q  142 accgactttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 205  Q
    ||  | |||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  23707703 actaaatttcactcatctattctatcaccgaccttgtccccatatcgtgttgcatgtttttttt 23707766  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 23619074 - 23618955
Alignment:
Q  215 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23619074 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23618975  T
Q  315 atacattagcacttcatctc 334  Q
    |||||||||||||| |||||    
T  23618974 atacattagcactttatctc 23618955  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 23650419 - 23650300
Alignment:
Q  215 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23650419 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23650320  T
Q  315 atacattagcacttcatctc 334  Q
    |||||||||||||| |||||    
T  23650319 atacattagcactttatctc 23650300  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 23626472 - 23626574
Alignment:
Q  227 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac 326  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  23626472 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac 23626571  T
Q  327 ttc 329  Q
    |||    
T  23626572 ttc 23626574  T

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Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 23708198 - 23708300
Alignment:
Q  227 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac 326  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  23708198 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac 23708297  T
Q  327 ttc 329  Q
    |||    
T  23708298 ttc 23708300  T

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Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 54140207 - 54140348
Alignment:
Q  55 tttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatcaccgactttcact 154  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||  ||||||||||    
T  54140207 tttaccctaaaatttgaacacaatgttactgaaattttgaagcaagttctagaagatttgaaaccattaacaaacctcaattctatcatggactttcact 54140306  T
Q  155 catctgttctatcaccgacctcatccccatatcgtgttgcat 196  Q
    ||| | |||||||||||||||||||||||||| |||||||||    
T  54140307 catatattctatcaccgacctcatccccatattgtgttgcat 54140348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 52807865 - 52807771
Alignment:
Q  42 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaatt 136  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  52807865 ctgcagctgtctttttaccctaaaatttgaacacaatgtcactgaaattttgaagcaagttctaggagatttgaaatcattaacaaacctcaatt 52807771  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 52807127 - 52807008
Alignment:
Q  215 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 314  Q
    |||||||||  | ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| | ||||||| |||||||||||| ||    
T  52807127 tgtgattttgaagctagaaacaatgtggtgactttgtgttgactgttagaaactagagcatgaatctatgaatgcagctcttgtgccttcattccatgtg 52807028  T
Q  315 atacattagcacttcatctc 334  Q
    ||||||||| | ||||||||    
T  52807027 atacattagtatttcatctc 52807008  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 54141120 - 54141180
Alignment:
Q  215 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcac 275  Q
    ||||||||  |||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  54141120 tgtgatttgggatctagatacaatgtggtggctttgtgtcgactgttagacactagagcac 54141180  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 52807673 - 52807614
Alignment:
Q  146 actttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 205  Q
    |||||||||||| | |||| ||||||||||| |||||||||||||||||||||| |||||    
T  52807673 actttcactcatgtattctctcaccgacctcgtccccatatcgtgttgcatgttcgtttt 52807614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 52806979 - 52806922
Alignment:
Q  277 aatctaagaatgtatctcttgtcccttcattccatttgatacattagcacttcatctc 334  Q
    |||||| ||||||| ||||||| |||||||||||| ||||||||||| ||||||||||    
T  52806979 aatctatgaatgtacctcttgtgccttcattccatgtgatacattagtacttcatctc 52806922  T

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