View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_low_4 (Length: 724)

Name: NF11571_low_4
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_low_4
NF11571_low_4
[»] chr5 (8 HSPs)
chr5 (635-724)||(33062935-33063024)
chr5 (635-724)||(33065116-33065205)
chr5 (635-724)||(33066190-33066279)
chr5 (635-724)||(33068328-33068417)
chr5 (635-724)||(33069414-33069503)
chr5 (635-723)||(33067276-33067364)
chr5 (635-724)||(33064030-33064119)
chr5 (1-57)||(33083593-33083649)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 635 - 724
Target Start/End: Original strand, 33062935 - 33063024
Alignment:
Q  635 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtc 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33062935 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtc 33063024  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 635 - 724
Target Start/End: Original strand, 33065116 - 33065205
Alignment:
Q  635 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtc 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33065116 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtc 33065205  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 635 - 724
Target Start/End: Original strand, 33066190 - 33066279
Alignment:
Q  635 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtc 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33066190 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtc 33066279  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 635 - 724
Target Start/End: Original strand, 33068328 - 33068417
Alignment:
Q  635 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtc 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33068328 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtc 33068417  T

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Target: chr5; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 635 - 724
Target Start/End: Original strand, 33069414 - 33069503
Alignment:
Q  635 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtc 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33069414 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtc 33069503  T

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Target: chr5; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 635 - 723
Target Start/End: Original strand, 33067276 - 33067364
Alignment:
Q  635 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggt 723  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33067276 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggt 33067364  T

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Target: chr5; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 635 - 724
Target Start/End: Original strand, 33064030 - 33064119
Alignment:
Q  635 aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtc 724  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  33064030 aacacggaacttccaactattaaacttataagtttcagcgcatgttttagataccgctgaaattccaataaacattgggccaccatggtc 33064119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33083593 - 33083649
Alignment:
Q  1 ctaatcgagttaaggacccaaaaagcagcacaacaacaaagtaacaaacacgagaga 57  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  33083593 ctaattgagttaaggacccaaaaaacagcaaaacaacaaagtaacaaacacgagaga 33083649  T

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