View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_low_44 (Length: 315)

Name: NF11571_low_44
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_low_44
NF11571_low_44
[»] chr3 (4 HSPs)
chr3 (7-201)||(31800294-31800487)
chr3 (262-315)||(31800181-31800234)
chr3 (79-186)||(31799553-31799660)
chr3 (79-130)||(35942777-35942829)
[»] chr8 (4 HSPs)
chr8 (263-315)||(21190607-21190659)
chr8 (79-142)||(21190126-21190189)
chr8 (52-150)||(36338473-36338572)
chr8 (53-130)||(20112277-20112354)
[»] chr4 (2 HSPs)
chr4 (52-131)||(11148096-11148175)
chr4 (52-131)||(11147801-11147881)
[»] chr7 (4 HSPs)
chr7 (79-142)||(32390009-32390072)
chr7 (264-315)||(32390512-32390563)
chr7 (79-121)||(3987246-3987288)
chr7 (79-142)||(32390879-32390943)
[»] chr5 (5 HSPs)
chr5 (79-155)||(971215-971293)
chr5 (79-150)||(25215465-25215536)
chr5 (79-150)||(25279616-25279687)
chr5 (60-150)||(33136568-33136659)
chr5 (79-130)||(36681851-36681903)
[»] chr1 (4 HSPs)
chr1 (52-130)||(36475971-36476050)
chr1 (52-118)||(27585998-27586063)
chr1 (79-130)||(36475356-36475407)
chr1 (79-130)||(47445775-47445827)
[»] chr2 (2 HSPs)
chr2 (262-304)||(45114318-45114360)
chr2 (53-130)||(33002934-33003010)
[»] scaffold0169 (1 HSPs)
scaffold0169 (262-314)||(27276-27329)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 31800487 - 31800294
Alignment:
Q  7 aaaaactcccccgaaattgtaactttcatnnnnnnnntcccatagcttttgagaaacttctaaaactcctacgaaattgtgaaacgttagtcagttaccc 106  Q
    ||||||||||||||||||||||||||| |        ||||||   |||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31800487 aaaaactcccccgaaattgtaactttcgtcaaaaaa-tcccatgatttttaagaaacttctaaaactcctataaaattgtgaaacgttagtcagttaccc 31800389  T
Q  107 cctccatttgttttgattgttaaacgctatgacgtgacagttaattatatatatgatacctccatgtggaccgaactttaaatgttggctctgcc 201  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||| |||||||    
T  31800388 cctccgtttgttttgattgttaaacgctatgacgtgacagttaattgtatacatgacacctccatatggaccgaactttaaatgttgcctctgcc 31800294  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 31800234 - 31800181
Alignment:
Q  262 tggttgtttacattactcaataattaacggtatacaacatcacaaccacttttc 315  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  31800234 tggttgtttacattactcaataattaacggcatagaacatcacaaccacttttc 31800181  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 31799553 - 31799660
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaacgctatgacgtgacagttaattatatatatgatacctccatgtggacc 178  Q
    |||||||| ||| |||||||| ||||||||||| |||||||||| |||||||| ||||||| || ||||||| |  |||| ||  |||| |||||||||     
T  31799553 gaaattgtcaaatgttagtcaattaccccctccgtttgttttgactgttaaaccctatgacatggcagttaactgaatatgtggcaccttcatgtggact 31799652  T
Q  179 gaacttta 186  Q
    ||||||||    
T  31799653 gaacttta 31799660  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 35942829 - 35942777
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccc-tccatttgttttgattgttaaa 130  Q
    |||||||| |||||||||||| |||||||| ||||||||||||| ||||||||    
T  35942829 gaaattgttaaacgttagtcaattacccccctccatttgttttggttgttaaa 35942777  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 21190659 - 21190607
Alignment:
Q  263 ggttgtttacattactcaataattaacggtatacaacatcacaaccacttttc 315  Q
    |||||||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  21190659 ggttgtttacattactcaataattaacaatatacaacatcacaatcacttttc 21190607  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 21190126 - 21190189
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaacgctatgacgtg 142  Q
    |||||| | |||||||||||| ||||||||||| ||||| |||| ||||||||  |||||||||    
T  21190126 gaaattatcaaacgttagtcaattaccccctccttttgtattgactgttaaaccatatgacgtg 21190189  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 36338572 - 36338473
Alignment:
Q  52 cttttgagaaacttctaaaactcctacgaaattgtgaaacgttagtcagttaccccct-ccatttgttttgattgttaaacgctatgacgtgacagttaa 150  Q
    ||||| ||||||||| ||||| | ||  ||||||| |||||||||||| ||| | | | ||||||||||||||||||||||  | ||||||| |||||||    
T  36338572 cttttaagaaacttcaaaaacccttataaaattgtcaaacgttagtcaattatctcattccatttgttttgattgttaaactatgtgacgtggcagttaa 36338473  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 20112354 - 20112277
Alignment:
Q  53 ttttgagaaacttctaaaactcctacgaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaa 130  Q
    |||| ||||||||| ||||| ||   |||||| | |||||||||||| ||||||||||| |||||||||  |||||||    
T  20112354 ttttaagaaacttcaaaaaccccactgaaattatcaaacgttagtcaattaccccctccgtttgttttggctgttaaa 20112277  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 11148175 - 11148096
Alignment:
Q  52 cttttgagaaacttctaaaactcctacgaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaac 131  Q
    ||||| ||||||||| ||||| | || |||||||| ||| |||||||| ||||||||||| ||||||||| |||||||||    
T  11148175 cttttaagaaacttcaaaaacccttatgaaattgtcaaatgttagtcaattaccccctccgtttgttttggttgttaaac 11148096  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 11147801 - 11147881
Alignment:
Q  52 cttttgagaaacttctaaaactcctacgaaattgtgaaacgttagtcagtta-ccccctccatttgttttgattgttaaac 131  Q
    ||||| ||||||||| |||| |||   |||||||| |||||||||||| ||| |||||||| |||||||||  ||||||||    
T  11147801 cttttaagaaacttcaaaaattcccttgaaattgtcaaacgttagtcaattacccccctccgtttgttttggctgttaaac 11147881  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 32390009 - 32390072
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaacgctatgacgtg 142  Q
    |||||||| |||||||||||| ||| ||||||||||| ||||| |||||||||  |||||||||    
T  32390009 gaaattgtcaaacgttagtcaattatcccctccatttattttggttgttaaaccatatgacgtg 32390072  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 32390563 - 32390512
Alignment:
Q  264 gttgtttacattactcaataattaacggtatacaacatcacaaccacttttc 315  Q
    |||||||||||||||||||||||||| |||| ||| || |||| ||||||||    
T  32390563 gttgtttacattactcaataattaaccgtattcaatatgacaaacacttttc 32390512  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 3987288 - 3987246
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccctccatttgttttg 121  Q
    |||||||| |||||||||||| ||||||||||| |||||||||    
T  3987288 gaaattgtcaaacgttagtcaattaccccctccgtttgttttg 3987246  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 32390943 - 32390879
Alignment:
Q  79 gaaattgtgaaacgttagtcagtta-ccccctccatttgttttgattgttaaacgctatgacgtg 142  Q
    |||||| | |||||||||||| ||| |||||||| |||||||||| ||||||||  |||||||||    
T  32390943 gaaattatcaaacgttagtcaattacccccctccgtttgttttgactgttaaaccatatgacgtg 32390879  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 971293 - 971215
Alignment:
Q  79 gaaattgtgaaacgtt--agtcagttaccccctccatttgttttgattgttaaacgctatgacgtgacagttaattata 155  Q
    |||||||| |||||||  | ||| ||||||| ||||||||||||||||||||||| ||| |||||| ||||||| ||||    
T  971293 gaaattgtcaaacgttttactcaattaccccttccatttgttttgattgttaaaccctacgacgtggcagttaactata 971215  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 25215536 - 25215465
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaacgctatgacgtgacagttaa 150  Q
    |||||||| ||| ||||||| |||| ||||||| |||||||| ||||||| ||  |||||||||||||||||    
T  25215536 gaaattgtcaaatgttagtcggttatcccctccgtttgtttttattgttacaccatatgacgtgacagttaa 25215465  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 25279687 - 25279616
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaacgctatgacgtgacagttaa 150  Q
    |||||||| ||| ||||||| |||| ||||||| |||||||| ||||||| ||  |||||||||||||||||    
T  25279687 gaaattgtcaaatgttagtcggttatcccctccgtttgtttttattgttacaccatatgacgtgacagttaa 25279616  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 33136659 - 33136568
Alignment:
Q  60 aaacttctaaaactcctacgaaattgtgaaacgttagtcagtta-ccccctccatttgttttgattgttaaacgctatgacgtgacagttaa 150  Q
    ||||||| ||||||||   |||||||| |||||||||||| ||| |||||||||| |||||||  ||||| || |||||||||| |||||||    
T  33136659 aaacttcaaaaactcccctgaaattgttaaacgttagtcaattacccccctccatctgttttggctgttacactctatgacgtggcagttaa 33136568  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 36681903 - 36681851
Alignment:
Q  79 gaaattgtgaaacgttagtcagtta-ccccctccatttgttttgattgttaaa 130  Q
    |||||||| |||||||||||| ||| |||||||| |||||||||| |||||||    
T  36681903 gaaattgtcaaacgttagtcaattacccccctccgtttgttttgactgttaaa 36681851  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 36476050 - 36475971
Alignment:
Q  52 cttttgagaaacttctaaaactcctacgaaattgtgaaacgttagtcagtta-ccccctccatttgttttgattgttaaa 130  Q
    ||||| ||||||||| ||||| || | |||||||| |||||||||||| ||| ||||||||||||||||||  |||||||    
T  36476050 cttttaagaaacttcaaaaacccccatgaaattgttaaacgttagtcaattacccccctccatttgttttggctgttaaa 36475971  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 27586063 - 27585998
Alignment:
Q  52 cttttgagaaacttctaaaa-ctcctacgaaattgtgaaacgttagtcagttaccccctccatttgtt 118  Q
    ||||| ||||||||| |||| |||||  |||||||| |||||||||||| ||||||||||||||||||    
T  27586063 cttttaagaaacttcaaaaaactcct--gaaattgttaaacgttagtcaattaccccctccatttgtt 27585998  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 36475356 - 36475407
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaa 130  Q
    |||||||| |||||||||||| ||||||||||| |||||||||  |||||||    
T  36475356 gaaattgttaaacgttagtcaattaccccctccgtttgttttggctgttaaa 36475407  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 47445827 - 47445775
Alignment:
Q  79 gaaattgtgaaacgttagtcagttaccccc-tccatttgttttgattgttaaa 130  Q
    |||||| | |||||||||||| |||||||| ||||||||||||| ||||||||    
T  47445827 gaaattatcaaacgttagtcaattacccccctccatttgttttggttgttaaa 47445775  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 45114318 - 45114360
Alignment:
Q  262 tggttgtttacattactcaataattaacggtatacaacatcac 304  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  45114318 tggttgtttacattacttaataattaatggtatacaacatcac 45114360  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 33002934 - 33003010
Alignment:
Q  53 ttttgagaaacttctaaaactcctacgaaattgtgaaacgttagtcagttaccccctccatttgttttgattgttaaa 130  Q
    |||| ||||||||| |||||||  | |||||||| |||||||||| | ||||||||||| |||||||||  |||||||    
T  33002934 ttttaagaaacttcaaaaactcg-atgaaattgtcaaacgttagttaattaccccctccgtttgttttggatgttaaa 33003010  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 27329 - 27276
Alignment:
Q  262 tggttgtttacatt-actcaataattaacggtatacaacatcacaaccactttt 314  Q
    |||||||||||||| ||||||||| |||| ||| |||||||||||| |||||||    
T  27329 tggttgtttacatttactcaataactaacagtacacaacatcacaatcactttt 27276  T

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