View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_45 (Length: 314)
Name: NF11571_low_45
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 47875281 - 47875111
Alignment:
| Q |
20 |
ttccagcctcctgttctcttctgttagagtttcataacaatgcttcagtgcctcacagtccacttctgtttgtttcacctttgtcctgcatatattatat |
119 |
Q |
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| T |
47875281 |
ttccagcctcctgttctcttctgttagagtttcataacaatgcttcagtgcctcacagtccacttctgtttgtttcacctttgtcctgcatatattatat |
47875182 |
T |
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| Q |
120 |
cttaattaaacatgattattacatatatataagaattttatttgtatgcacctacgtcgtgtaacatgcatttaa |
194 |
Q |
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| T |
47875181 |
cttaattaaacatgattattaca----tataagaattttatttgtatgcacctacgttgtgtaacatgcatttaa |
47875111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 47875045 - 47874932
Alignment:
| Q |
196 |
gagaataatgattgtaaatatagaattacaaccttgccctcctgttctgaaaccacacctccacttgtctcgtcccaagattcagcttgcttgccaattc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47875045 |
gagaataatgattgtaaatatagaattacaaccttgccctcctgttctgaaaccacacctccacttgtctcgtcccaagattcagcttgcttgccaattc |
47874946 |
T |
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| Q |
296 |
ttgcctttgcttct |
309 |
Q |
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| T |
47874945 |
ttgcttttgcttct |
47874932 |
T |
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