View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_47 (Length: 299)
Name: NF11571_low_47
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 32795637 - 32795889
Alignment:
| Q |
19 |
attggaatccttagcatgaattacacaatcatatcaaatgtattgatcaatgatagtttataaaaaagtttacctatttactgtgcgctagagaaaataa |
118 |
Q |
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| T |
32795637 |
attggaatccttagcatgaattacacaattatatcaaatgtattgatcaatgatagtttataaaaaagttcaccaatttactatgcactagagaaaataa |
32795736 |
T |
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| Q |
119 |
aaaatgacttagaaataattttgatataattttgccacatgaaaatcataaattctttctctattactgcttgtagactcaatttatagagaaactcatg |
218 |
Q |
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| T |
32795737 |
aaaatgacttagaaataattttgatagaattttgccacatgaaaatcataaattctttctctattactgcttgtagactcaatttatagagaaactcatg |
32795836 |
T |
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| Q |
219 |
ccattcagcaaagggaaaagcatactgaaatagtttctagatccgaacactac |
271 |
Q |
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| T |
32795837 |
ccactcagcaaagggaaaaacatacggaaatagtttctagatccgaacactac |
32795889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 26900314 - 26900253
Alignment:
| Q |
19 |
attggaatccttagcatgaattacacaatcatatcaaatgtattgatcaatgatagtttata |
80 |
Q |
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| T |
26900314 |
attggaatccttagtatgaattacacaattatatcaaacatatcaatcaatgatattttata |
26900253 |
T |
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