View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_54 (Length: 268)
Name: NF11571_low_54
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 326019 - 326263
Alignment:
| Q |
19 |
aaaacaacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggacggagcctttgttgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326019 |
aaaacaacatgagaaattgtgtttgttttctcagcaccatcaccaccaagattcttcttcttgttgtctactactactacttggacggagcctttgttgt |
326118 |
T |
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| Q |
119 |
tcttcttatacattactctttcgaacaacaagaatgaaagaagaagcagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttct |
218 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
326119 |
tcttcttatatgttactctttcgaacaacaacaatgaaagaagaagcagctccttccatttttcgactgcgtttagcggtggtttgttgcttttccttct |
326218 |
T |
|
| Q |
219 |
tcgctaactcctccgctcccgccgttgcgtttgttctctgcttct |
263 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
326219 |
tcgctaactcctccgctccctccgttgcgtttgttctctgtttct |
326263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 1096083 - 1096152
Alignment:
| Q |
24 |
aacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactact |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1096083 |
aacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttcttgtctactact |
1096152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 1096351 - 1096259
Alignment:
| Q |
25 |
acatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggac-ggagcctttgttgtt |
119 |
Q |
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| T |
1096351 |
acatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttcttgtctactacttcta---ggacgggagcctttgttgtt |
1096259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 326623 - 326523
Alignment:
| Q |
23 |
caacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggac-ggagcctttgttgttct |
121 |
Q |
| |
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|||||||||||||||||| | ||||||||||||| ||||||| || || |||||||| |||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
326623 |
caacatgagaaattgtgtctattttctcagcaccatcaccactaacat--ttcttcttcttgtctactact-ctactaggacaggagcctttgttgttct |
326527 |
T |
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| Q |
122 |
tctt |
125 |
Q |
| |
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|||| |
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|
| T |
326526 |
tctt |
326523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 326496 - 326429
Alignment:
| Q |
189 |
gtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccgccgttgcgtttgttctc |
256 |
Q |
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||||||||||||||||||| | |||||| ||| ||||||||||||||| ||||| ||| ||||||||| |
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| T |
326496 |
gtttagcggtggtttgttgttcttcctttttcactaactcctccgctcacgccgctgcatttgttctc |
326429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 498080 - 498203
Alignment:
| Q |
112 |
ttgttgttcttcttatacatt-actctttcgaacaacaagaatgaaagaagaag---cagctccttcggtttttcgattgtgtttagcggtggtttgttg |
207 |
Q |
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|||||||| |||||||| || ||||||||||||||||| || | ||||||||| || || ||||||||||||| ||| ||||||||||||||||||| |
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| T |
498080 |
ttgttgttattcttatatgttgactctttcgaacaacaacaacggaagaagaagaaacaacttcttcggtttttcggttgcgtttagcggtggtttgttg |
498179 |
T |
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| Q |
208 |
cttttccttcttcgctaactcctc |
231 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
498180 |
ttcttccttcttcgctaactcctc |
498203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 498903 - 498689
Alignment:
| Q |
48 |
ctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggacgga-gcctttgttgttctt---cttatacattactctttcgaa |
143 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||| ||||||||||| ||||| | |||||||||||| || |||||| | ||||||||||| |
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| T |
498903 |
ctcagcaccgtcacaacaaagattcttcttcttcttgtttactactacta---ggacgaaagcctttgttgttgttattcttatatttgactctttcgaa |
498807 |
T |
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| Q |
144 |
caacaagaatgaaagaagaagcagc---tccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccgc |
240 |
Q |
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|| ||| | | ||||||||| ||| | ||||||||||| ||| |||||||||| ||||||| | ||||||||| |||||||||||||| | ||| |
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| T |
498806 |
cagcaacagcggaagaagaagaagcaacttcttcggttttttagttgcttttagcggtgatttgttgttcttccttctttgctaactcctccgcccacgc |
498707 |
T |
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| Q |
241 |
cgttgcgtttgttctctg |
258 |
Q |
| |
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|| |||||||||||||| |
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| T |
498706 |
cgccgcgtttgttctctg |
498689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 498211 - 498423
Alignment:
| Q |
48 |
ctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggacgg-agcctttgttgttcttctt---atacatt-actctttcga |
142 |
Q |
| |
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||||||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||| ||||||||||||| || || ||| || |||||||||| |
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| T |
498211 |
ctcagcaccgtcaccacaaagatgtttcttgttgttgtttactactacta---ggacgggagcctttgttgttgttattcgtatatgttgactctttcga |
498307 |
T |
|
| Q |
143 |
acaacaagaatgaaaga---agaagcagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccg |
239 |
Q |
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||| || || | |||| |||||||| | |||| |||||||| ||| ||||||||||||||||| | |||||||||||||||| ||||| | | || |
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| T |
498308 |
acagcaccaacggaagaagaagaagcagtttcttcagtttttcggttgctattagcggtggtttgttgttcttccttcttcgctaacacctcctcccacg |
498407 |
T |
|
| Q |
240 |
ccgttgcgtttgttct |
255 |
Q |
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||| ||||||||||| |
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| T |
498408 |
tcgtcgcgtttgttct |
498423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 499090 - 499031
Alignment:
| Q |
21 |
aacaacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttctt |
80 |
Q |
| |
|
||||| ||||||||||||| |||| |||||| |||||||||||| ||||||||||||||| |
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| T |
499090 |
aacaaaatgagaaattgtgattgtattctcaacaccgtcaccacaaagattcttcttctt |
499031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 498967 - 498912
Alignment:
| Q |
175 |
ggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcct |
230 |
Q |
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||||||| | ||| ||||||||||||||||||| | |||||||||||||||||||| |
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| T |
498967 |
ggttttttggttgcgtttagcggtggtttgttgttattccttcttcgctaactcct |
498912 |
T |
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