View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_55 (Length: 266)
Name: NF11571_low_55
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_55 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 3592511 - 3592763
Alignment:
| Q |
14 |
agaggtcaaatttacatgaacaacataagtaataaataagttaaaaagattaacaatggcaaggtactactattatatcactttagaaaaagagtaacaa |
113 |
Q |
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| T |
3592511 |
agaggtcaaatttacatgaacaacataagtaataaataagttaaaaagattaacaatggcaaggtactactattatatcactttagaaaaagagtaacaa |
3592610 |
T |
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| Q |
114 |
ttaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataagggaacaacaaggtgtattgtttgaccatacggattcaattta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
3592611 |
ttaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataagggaacaacaaggtgtattttttgaccatacgaattcaattta |
3592710 |
T |
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| Q |
214 |
aaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592711 |
aaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaat |
3592763 |
T |
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