View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_6 (Length: 600)
Name: NF11571_low_6
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 34877689 - 34877258
Alignment:
| Q |
10 |
gcacagacataaagatttcattgaataaaaatccagaaagaggtgggcgattttggctggatgctgttgaacacatgtagtagtaagaatcaaatctttc |
109 |
Q |
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| T |
34877689 |
gcacagacataaagatttcattgaataaaaatccagaaagaggtgggcgattttggctggatgctgttgaacacatgtagtagtaagaatcaaatctttc |
34877590 |
T |
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| Q |
110 |
attcacgtccatatgctttattttagtgc------taaaac-ataacatagataactgtaactggataagacattataattgttgaatcaattattaatc |
202 |
Q |
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| T |
34877589 |
attcacgtccatatgctttattttattgaccattttagtgctaaaacatagataactgtaactggataagacattataattgttgaatcaattattaatc |
34877490 |
T |
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| Q |
203 |
attagtttataccaaaccgcacatagaatgtgaaaagtcctagaaattgaaaccgggttttacatttcaatgaatagaaaaatgcaactacagaaatagt |
302 |
Q |
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| T |
34877489 |
attagtttataccaaaccgcacatagaatgtgaaaagtcctagaaattgaaaccgggttttacatttcaatgaatagaaaaatgcaactacagaaatagt |
34877390 |
T |
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| Q |
303 |
atattttgattttgagtggtaaaaaccaaatttgtctctataaattgtttaaaatgctgcaactaattagtttctgacattaacaaaaatactcctttac |
402 |
Q |
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| T |
34877389 |
atattttgattttgagtggtaaaaaccaaatttgtctctat-aattgtttaaaatgctgcaactaattagtttctgacattaacaaaaatactcctttac |
34877291 |
T |
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| Q |
403 |
cataattgtattggtaaaaagaaaaaaacataattg |
438 |
Q |
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| T |
34877290 |
cataattgtattggtaaa---aaaaaaacataattg |
34877258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 459 - 582
Target Start/End: Complemental strand, 34877265 - 34877142
Alignment:
| Q |
459 |
cataattgttatttgtattagtaatgttaacgtgataattaagtgagtgaatgacactcattcgtgccatagggtctatgaatgacgtcattattaaata |
558 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34877265 |
cataattgatatttgtattagtaatgttaacgtgataattaagtgagtgaatgacactcattcgtgccatagggtctatgaatgatgtcattattaaata |
34877166 |
T |
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| Q |
559 |
acattgagcatgaaccaacccact |
582 |
Q |
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| T |
34877165 |
acattgagcatgaaccaacccact |
34877142 |
T |
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