View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_63 (Length: 250)
Name: NF11571_low_63
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 23735721 - 23735540
Alignment:
| Q |
72 |
tactagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgca----ggtaactcgaatcatc |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
23735721 |
tactagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgttatcaaatctcaaatgcaaataggtaactcgaatcatc |
23735622 |
T |
|
| Q |
168 |
tctttttaatatcaaccaattgtatgaatgtttttattctagattgtcttactttgttgtctttgtctatgtttgttcaatg |
249 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23735621 |
actttttaatatcaaccaattgtatggatgtttttattctagattgtcttactttgttgtctttgtctaagtttgttcaatg |
23735540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 23650096 - 23649915
Alignment:
| Q |
72 |
tactagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgca----ggtaactcgaatcatc |
167 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||| |
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| T |
23650096 |
tactagttgtgctgttggaaattggaggaaaggtgccaggaaccgagtgtctcctcaatcgtcatcaaatctcgaatgcaaataggtaactcgaatcatt |
23649997 |
T |
|
| Q |
168 |
tctttttaatatcaaccaattgtatgaatgtttttattctagattgtcttactttgttgtctttgtctatgtttgttcaatg |
249 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23649996 |
actttttaatatcaaccaattgtatggatgtttttattctagattgtcttactttgttgtctttgtctaagtttgttcaatg |
23649915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 23618751 - 23618571
Alignment:
| Q |
72 |
tactagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgc----aggtaactcgaatcatc |
167 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
23618751 |
tactagttgtgctgttggaaattggaggaacgatgccaggaaccgagtgtctccccaatcttcatcaaatctcaaatgcaaataggtaactcgaatcatc |
23618652 |
T |
|
| Q |
168 |
tctttttaatatcaaccaattgtatgaatg-tttttattctagattgtcttactttgttgtctttgtctatgtttgttcaa |
247 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23618651 |
actttttaatatcaaccaattgtatggatgttttttattctagattgtcttactttgttgtctttgtctaagtttgttcaa |
23618571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 23626751 - 23626871
Alignment:
| Q |
72 |
tactagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgc----aggtaactcgaatcatc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||| || ||| ||| |
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| T |
23626751 |
tactagttgtgctgttggaaattggaggaacggtgccagcaaccgagtgtctccccaatcatcatcaaatctcaaatgcaaataggtaaatcaaataatc |
23626850 |
T |
|
| Q |
168 |
tctttttaatatcaaccaatt |
188 |
Q |
| |
|
|| |||||||||||||||||| |
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|
| T |
23626851 |
tcattttaatatcaaccaatt |
23626871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 23708477 - 23708597
Alignment:
| Q |
72 |
tactagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgc----aggtaactcgaatcatc |
167 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||| || ||| ||| |
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| T |
23708477 |
tactagttgtgctgttggaaattggaggaacggtgccagcaaccgagtgtctccccaatcatcatcaaatctcaaatgcaaataggtaaatcaaataatc |
23708576 |
T |
|
| Q |
168 |
tctttttaatatcaaccaatt |
188 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
23708577 |
tcattttaatatcaaccaatt |
23708597 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 11842749 - 11842635
Alignment:
| Q |
106 |
gccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgca--------ggtaactcgaatcatctctttttaatatcaaccaattgtatgaatg |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||| | | |
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| T |
11842749 |
gccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacg |
11842650 |
T |
|
| Q |
198 |
tttttattctagatt |
212 |
Q |
| |
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||||||||||||||| |
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| T |
11842649 |
tttttattctagatt |
11842635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 53286991 - 53287104
Alignment:
| Q |
107 |
ccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgca--------ggtaactcgaatcatctctttttaatatcaaccaattgtatgaatgt |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||| | || |
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| T |
53286991 |
ccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgt |
53287090 |
T |
|
| Q |
199 |
ttttattctagatt |
212 |
Q |
| |
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|||||||||||||| |
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| T |
53287091 |
ttttattctagatt |
53287104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 54141896 - 54141959
Alignment:
| Q |
151 |
aggtaactcgaatcatctctttttaatatcaaccaattgtatgaatgtttttattctagattgt |
214 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
54141896 |
aggtaactcaaatcatctctttttaatttcaaccaattgtatgtatgtttttattctagattgt |
54141959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 52806635 - 52806560
Alignment:
| Q |
151 |
aggtaactcgaatcatctcttttt-aatatcaaccaattgtatgaatgtttttattctagattgtcttactttgtt |
225 |
Q |
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||||| ||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
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| T |
52806635 |
aggtacctcaaatcatctcttttttaatatcaaccaattgtatgcatgtttttattctagagtgtcatactttgtt |
52806560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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