View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_low_64 (Length: 249)
Name: NF11571_low_64
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_64 |
 | |
|
| [»] chr3 (22 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10262851 - 10262621
Alignment:
| Q |
19 |
ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10262851 |
ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttatt |
10262752 |
T |
|
| Q |
119 |
acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta |
218 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| || |||||| ||||||||| |||||| |||||||| |||| ||||||||| || ||||| |
|
|
| T |
10262751 |
acaatttcttctatgcaaggaagtttgctaggcaaatgttcccttagttctggacaattatgtaactccatagctctaagtcgaggaaaagaaagtttta |
10262652 |
T |
|
| Q |
219 |
tgccttcaaagggaagccattgattccaatt |
249 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |
|
|
| T |
10262651 |
tgccttcatagggaagccattcattccaatt |
10262621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10197826 - 10197596
Alignment:
| Q |
19 |
ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt |
118 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10197826 |
ggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttatt |
10197727 |
T |
|
| Q |
119 |
acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta |
218 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||| |||||| ||||||||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
10197726 |
acaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtaactccatagctctaagtcgaggaaaagcaaatttta |
10197627 |
T |
|
| Q |
219 |
tgccttcaaagggaagccattgattccaatt |
249 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |
|
|
| T |
10197626 |
tgccttcatagggaagccattcattccaatt |
10197596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10582761 - 10582533
Alignment:
| Q |
19 |
ggtccttccatcaagcccatcgatattaattttcttt-actgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttat |
117 |
Q |
| |
|
||||||| || |||||||||| || |||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||| |
|
|
| T |
10582761 |
ggtcctttcaccaagcccatcaatcttaatttttttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgaacacaaccttctat |
10582665 |
T |
|
| Q |
118 |
tacaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttt |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10582664 |
ttcaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattgt |
10582565 |
T |
|
| Q |
218 |
atgccttcaaagggaagccattgattccaatt |
249 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
10582564 |
atgccttcaaagggaagccatttattccaatt |
10582533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 10090944 - 10090713
Alignment:
| Q |
19 |
ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt |
118 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10090944 |
ggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttatt |
10090845 |
T |
|
| Q |
119 |
acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgt-aacttcatagctcgaagttgaggaaaagcaaatttt |
217 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||| |||||| ||||||||||| ||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
10090844 |
acaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtgtactccatagctctaagtcgaggaaaagcaaatttt |
10090745 |
T |
|
| Q |
218 |
atgccttcaaagggaagccattgattccaatt |
249 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |
|
|
| T |
10090744 |
atgccttcatagggaagccattcattccaatt |
10090713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 10361720 - 10361947
Alignment:
| Q |
19 |
ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt |
118 |
Q |
| |
|
||||||||||||||||||||| || |||| || |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10361720 |
ggtccttccatcaagcccatcaatcttaaaattttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgagaacaaccttgtatt |
10361816 |
T |
|
| Q |
119 |
acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta |
218 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||||| |||||| ||||||||| |||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
10361817 |
acaatttcttctatgcaaggaaggttgctcggcaaatgtccccttagttctggacaattatgtaactccatagctctaagttgaggaaaagcacatttta |
10361916 |
T |
|
| Q |
219 |
tgccttcaaagggaagccattgattccaatt |
249 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |
|
|
| T |
10361917 |
tgccttcaaagggaatccattcattccaatt |
10361947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 10431960 - 10432190
Alignment:
| Q |
19 |
ggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttatt |
118 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||| ||| |
|
|
| T |
10431960 |
ggtccttccgtcaagcccattgatattaactttctttattgacgacaaccaatgcatagtgtttggctctgtttccagtagttgagaacaacctgatata |
10432059 |
T |
|
| Q |
119 |
acaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaatttta |
218 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||| |||||| |||| ||| |||| |||||||||||| ||||| |
|
|
| T |
10432060 |
tcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcaggacaattatgtaactccataactctaagtcgaggaaaagcaactttta |
10432159 |
T |
|
| Q |
219 |
tgccttcaaagggaagccattgattccaatt |
249 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |
|
|
| T |
10432160 |
tgccttcaaagggcagccattcattccaatt |
10432190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10519624 - 10519408
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
10519624 |
caagcccattgatattcattttttttattgaagacaaccaatgcaaagtagatgg---tgtttccaatagatgaacacaaccttttattacaatttcttc |
10519528 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||| ||||||| | | | |||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
10519527 |
tatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaactttatagccttaagttgaggaaaagcaaattttatgccttcgaag |
10519428 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
10519427 |
ggaatccattcattccaatt |
10519408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 249
Target Start/End: Complemental strand, 10665658 - 10665449
Alignment:
| Q |
31 |
aagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttct |
130 |
Q |
| |
|
|||||||| ||| |||| ||| |||| |||||||||||||||||||||| || ||||||| |||||| || |||| ||| ||||||||||| |
|
|
| T |
10665658 |
aagcccattgattttaactttttttattgacgacaaccaatgcaaagtg---ggacctgtttctaatagacga------ccttcaatttcaatttcttct |
10665568 |
T |
|
| Q |
131 |
atgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagg |
230 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
10665567 |
atacaaggaagatggctaggcaaatgtccctttagttttggacaattacgtaactccatggctctaagtcgaggaaaagcaaattttatgccttcaaagg |
10665468 |
T |
|
| Q |
231 |
gaagccattgattccaatt |
249 |
Q |
| |
|
||| ||||| ||||||||| |
|
|
| T |
10665467 |
gaatccattcattccaatt |
10665449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 10373774 - 10373991
Alignment:
| Q |
29 |
tcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttctt |
128 |
Q |
| |
|
|||||||||| |||||| |||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10373774 |
tcaagcccattgatattcatttcttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttctt |
10373870 |
T |
|
| Q |
129 |
ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaa |
228 |
Q |
| |
|
||||| ||||||| | | | |||||||||||| |||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
10373871 |
ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaa |
10373970 |
T |
|
| Q |
229 |
gggaagccattgattccaatt |
249 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
10373971 |
gggaatccattcattccaatt |
10373991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10129064 - 10128848
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
10129064 |
caagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc |
10128968 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||| ||||||| | | | |||||||||||| |||||| |||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10128967 |
tatggaaggaaggttggtgggcaaatgtccccttagttctggacaattccataactctatagccttaagttgaggaaaagcaaattttatgccttcaaag |
10128868 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
10128867 |
ggaatccattcattccaatt |
10128848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 11779922 - 11780128
Alignment:
| Q |
40 |
gatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga |
139 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
11779922 |
gatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaacaaccttttattacaatttcttcgatgcaagga |
11780018 |
T |
|
| Q |
140 |
agatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccatt |
239 |
Q |
| |
|
|| | | |||||||||||||| |||||| ||||||||||| |||| ||||| | ||| ||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
11780019 |
aggttggtaggcaaatgtccccttagttcaggacaattacgcaactccatagttttgagtcgaggaaatgcaaattttataccttcaaagggaaaccatt |
11780118 |
T |
|
| Q |
240 |
gattccaatt |
249 |
Q |
| |
|
||||||||| |
|
|
| T |
11780119 |
cattccaatt |
11780128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 9851878 - 9851662
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||| ||||||||| ||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
9851878 |
caagcccattgatattcattttttttattgaagacaaccaacgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc |
9851782 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||| ||||||| | | | ||||||| |||| ||||||| ||||||| |||||||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
9851781 |
tatggaaggaaggttggtgggcaaatatccccttagttttggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaag |
9851682 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
9851681 |
ggaatccattcattccaatt |
9851662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10079549 - 10079333
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||| |||||||| |||||| ||| |||||||||||||| | ||| |||||||| | ||||||||| |
|
|
| T |
10079549 |
caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtttccaatagattcgcacaaccttttatcataatttcttc |
10079453 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||||||||||| | |||||| ||||| |||||||||| ||||||| | ||||| ||||| || |||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
10079452 |
tatgcaaggaaggtcgctaggaaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag |
10079353 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10079352 |
ggaagccattgattccaatt |
10079333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 10186519 - 10186303
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||| |||||||| |||||| ||| ||| |||||||||| | ||| |||||||| | ||||||||| |
|
|
| T |
10186519 |
caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtatccaatagattcgcacaaccttttatcataatttcttc |
10186423 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||| ||||||| | ||||| ||||| || |||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
10186422 |
tatgcaaggaaggtcactaggcaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag |
10186323 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10186322 |
ggaagccattgattccaatt |
10186303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 11771363 - 11771157
Alignment:
| Q |
40 |
gatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga |
139 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||||| ||| | ||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
11771363 |
gatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaacaacctttgattacaatttcttcgatgcaagga |
11771267 |
T |
|
| Q |
140 |
agatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaagggaagccatt |
239 |
Q |
| |
|
|| | | |||| |||||| || |||||| ||||||||||| |||| ||||| | ||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
11771266 |
aggttggtaggaaaatgtacccttagttcaggacaattacgcaactccatagttttgagtcgaggaaaagcaaattttataccttcaaaaggaagccatt |
11771167 |
T |
|
| Q |
240 |
gattccaatt |
249 |
Q |
| |
|
||||||||| |
|
|
| T |
11771166 |
cattccaatt |
11771157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 249
Target Start/End: Complemental strand, 10034140 - 10033923
Alignment:
| Q |
29 |
tcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttctt |
128 |
Q |
| |
|
|||||||||| |||||| ||||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
10034140 |
tcaagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttttt |
10034044 |
T |
|
| Q |
129 |
ctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaa |
228 |
Q |
| |
|
||||| ||||||| | | | |||||||||||| |||||| ||||||||| ||||| ||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
10034043 |
ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattatataactctatagccttaagtcgaggaaaagcacattttatgccttcaaa |
10033944 |
T |
|
| Q |
229 |
gggaagccattgattccaatt |
249 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
10033943 |
gggaatccattcattccaatt |
10033923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 9840997 - 9840784
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
9840997 |
caagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaattttttc |
9840901 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||| ||||||| | | | ||||||| |||| |||||| |||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
9840900 |
tatggaaggaaggttggtgggcaaatatccccttagttctggacaattgcgtaactctatagccttaagttgaggaaaagca---tttatgccttcaaag |
9840804 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
9840803 |
ggaatccattcattccaatt |
9840784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 10502722 - 10502600
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
||||||||| ||||||| ||| || | |||||||| |||||||||||| ||| ||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
10502722 |
caagcccattgatattaccttttttcaatgacgacagccaatgcaaagta---ggcggtgtttccaatagatgagcacaaccttctattacaatttcttc |
10502626 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaat |
155 |
Q |
| |
|
|||| ||| ||| |||| ||| |||| |
|
|
| T |
10502625 |
tatgaaagaaaggtggcaaggtaaat |
10502600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 11129020 - 11129089
Alignment:
| Q |
91 |
ttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtccc |
160 |
Q |
| |
|
|||||| ||||||| ||| ||||| |||||| |||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
11129020 |
ttccaacagatgaggacaacctttatttacaaattcttctatggaagagagatggctaggcaaatttccc |
11129089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 10530731 - 10530659
Alignment:
| Q |
88 |
tgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtccc |
160 |
Q |
| |
|
||||||||||||| ||| ||| |||| |||| ||||||||||||| ||| || |||||||| ||||||||| |
|
|
| T |
10530731 |
tgtttccaatagacgagcacaaccttctatttgaatttcttctatggaagataggtggctaggaaaatgtccc |
10530659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 13163027 - 13162975
Alignment:
| Q |
122 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
174 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
13163027 |
atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
13162975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 13334951 - 13334899
Alignment:
| Q |
122 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
174 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
13334951 |
atttcgtctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
13334899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 55532 - 55748
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
||||||||| |||||| ||| | |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
55532 |
caagcccattgatattcattatttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttc |
55628 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||| ||||||| | | | |||||||||||| |||||| ||||||| |||||||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
55629 |
tatggaaggaaggttggtgggcaaatgtccccttagttctggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaag |
55728 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
55729 |
ggaatccattcattccaatt |
55748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 26909027 - 26908811
Alignment:
| Q |
30 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||| |||||| ||||| ||| |||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
26909027 |
caagcccatggatattaattttcggtatggacgacacccaatgtaaagtagatgg---tgtttccaatagatgatagcaaccttttattacaatttcttc |
26908931 |
T |
|
| Q |
130 |
tatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattttatgccttcaaag |
229 |
Q |
| |
|
|||||||||||| | |||||||||| |||| |||||||| ||||||||| | |||| |||| || ||| ||||||||| ||| || || ||||||||| |
|
|
| T |
26908930 |
tatgcaaggaaggttgctaggcaaaagtccttttagttttggacaattatgcaactcaatagttctgagtcgaggaaaagaaaaattcattccttcaaag |
26908831 |
T |
|
| Q |
230 |
ggaagccattgattccaatt |
249 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26908830 |
ggaagccattgattccaatt |
26908811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 11487164 - 11487042
Alignment:
| Q |
40 |
gatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaagga |
139 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||||| ||| ||||||||| ||||| | ||| ||| |||| ||||| ||||||||||||| |
|
|
| T |
11487164 |
gatatcaattttttttattgacgacaaccaatgcaaagcagatgg---tgtttccaaaagatgggcacaacctgttatattaattttttctatgcaagga |
11487068 |
T |
|
| Q |
140 |
agatggctaggcaaatgtccctttag |
165 |
Q |
| |
|
|| |||||||||||||||||| |||| |
|
|
| T |
11487067 |
aggtggctaggcaaatgtccccttag |
11487042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 44955662 - 44955732
Alignment:
| Q |
88 |
tgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatggctaggcaaatgtc |
158 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||||||||| ||| |||||| || ||||| |||| |
|
|
| T |
44955662 |
tgtttccaatagatgagcacaatcttttatttcaatttcttctatggaagaaagatgacttggcaagtgtc |
44955732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 827942 - 827895
Alignment:
| Q |
120 |
caatttcttctatgcaaggaagatggctaggcaaatgtccctttagtt |
167 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
827942 |
caatttcctctatggaaggaagatggctaggcaaatgtcccttcagtt |
827895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 143961 - 144013
Alignment:
| Q |
122 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
174 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
143961 |
atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
144013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 152266 - 152318
Alignment:
| Q |
122 |
atttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggaca |
174 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
152266 |
atttcatctattgaaggaagactgctaggcaaatgtccctttagtttaggaca |
152318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 17851024 - 17851072
Alignment:
| Q |
201 |
gaggaaaagcaaattttatgccttcaaagggaagccattgattccaatt |
249 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||| |||||||| |
|
|
| T |
17851024 |
gaggaaaagcaaaattgatgcctacaaagggaagccattccttccaatt |
17851072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University