View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_65 (Length: 242)
Name: NF11571_low_65
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 49179414 - 49179522
Alignment:
| Q |
20 |
tcttatgtttgtggattgtttttgttccttctttacttcgactgtagttcacaaatcttatttttgtatatgttttgcagctgtcacccgataatattaa |
119 |
Q |
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| T |
49179414 |
tcttatgtttgtggattgtttttgttccttctttacttcgactgtatttcacaaatcttatttttgtatatgttttgcagctgtcacccgacaatattaa |
49179513 |
T |
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| Q |
120 |
ttggaaata |
128 |
Q |
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| T |
49179514 |
ttggaaata |
49179522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 49170712 - 49170633
Alignment:
| Q |
20 |
tcttatgtttgtggattgtttttgttccttctttacttcgactgtagttcacaaatcttatttttgtatatgttttgcag |
99 |
Q |
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| T |
49170712 |
tcttatgtttgtggattgtttttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcag |
49170633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 49179506 - 49179554
Alignment:
| Q |
182 |
aatattaattggaaatacccaaattttgttcctgaatgcatttcatctc |
230 |
Q |
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| T |
49179506 |
aatattaattggaaatacccaaattttgttcctgaatgcatttcgtctc |
49179554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 49170611 - 49170572
Alignment:
| Q |
191 |
tggaaatacccaaattttgttcctgaatgcatttcatctc |
230 |
Q |
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| T |
49170611 |
tggaaatacccaaattttgttcctgaatgcatttcatctc |
49170572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 48589549 - 48589593
Alignment:
| Q |
127 |
tatctacctaccctccctacccctacttcatttactcatagttgg |
171 |
Q |
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| T |
48589549 |
tatctacctaccctccctacccctacttcatttactaatagttgg |
48589593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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