View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_low_7 (Length: 598)
Name: NF11571_low_7
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 19 - 590
Target Start/End: Original strand, 41543000 - 41543571
Alignment:
| Q |
19 |
atgcagtgcagtcgccataacctcaatgtggtagattttctgcacttcatcgatttatttctgtttttagttttagtttggatctcttaatccggtggat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41543000 |
atgcagtgcagtcgccataacctcaatgtggtagattttctgcacttcatcgatttatttctgtttttagttttagtttggatctcttaatccggtggat |
41543099 |
T |
|
| Q |
119 |
tttggtgaatataaccattttctgatttttatagtatgtttctcttgctgaatattcatttcaaataggaagttaaccatgtttcgtcgttattttcctt |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41543100 |
tttggtgaatataaccattatctgatttttatagtatgtttctcttgctgaatattcatttcaaataggaagttaaccatgtttcgtcgttattttcctt |
41543199 |
T |
|
| Q |
219 |
ttactttttgtaggtttctgccgggaatgggtacttgatgagatcacactcaatcatggaatatgcacttttctgccggaattaattttatatgaaaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41543200 |
ttactttttgtaggtttctgccgggaatgggtacttgatgagatcacactcaatcatggaatatgcacttttctgccggaattaattttatatgaaaaat |
41543299 |
T |
|
| Q |
319 |
ctggatagttttgttttcacatgtgatactattttatgatgtgtatatttgtataaaacaaattatcgccagtgatgctgcaaatccctggccctgatgc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41543300 |
ctggatagttttgttttcacatgtgatactattttatgatgtgtacatttgtataaaacaaattatcgccagtgatgctgcaaatccctggccctgatgc |
41543399 |
T |
|
| Q |
419 |
atctaagagttctgaacttctgagaccttctgttgttttcacaaacttcattgatatcataatgatgtcagtgataaaatatgattccattatgattctt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41543400 |
atctaagagttctgaacttctgagaccttctgttgttttcacaaacttcattgatatcataatgatgtcagtgataaaatatgattccattatgattctt |
41543499 |
T |
|
| Q |
519 |
cctattctttgcttggaacattggttgggctaccatatgtgccattcagtcatttaattttctatctctgct |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41543500 |
cctattctttgcttggaacattggttgggctaccatatgtgccattcagtcatttaattttctatctctgct |
41543571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 41559144 - 41559411
Alignment:
| Q |
19 |
atgcagtgcagtcgccataacctcaatgtggtagattttctgcacttcatcgatttatttctgtttttagttttagtttggatctcttaatccggtggat |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
41559144 |
atgcagtgcagccgccataacctcaatgtggtagattttctgcacttcatcaatttatttctgttttta-ttttcgtttggatctcttaatttggtggat |
41559242 |
T |
|
| Q |
119 |
tttggtgaatataaccattttctgatttttatagtatgtttctcttgctgaatattcatttcaaataggaagttaaccatgtttcgtcgttattttcctt |
218 |
Q |
| |
|
||||||||||| || ||| |||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| || |
|
|
| T |
41559243 |
tttggtgaataaaagcatcaactgatttttacagtatgtttttcttgctgtatattcatttcaaatagaaagttaaccatgtttcgtcgttactttcatt |
41559342 |
T |
|
| Q |
219 |
ttactttttgtaggtttctgccgggaatgggtacttgatgagatcacactcaatcatggaatatgcact |
287 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
41559343 |
tttttttttgtaggtttctgccgggaatgggtacgtgatgagatcacactcaatcatggaaaatgcact |
41559411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 41559409 - 41559498
Alignment:
| Q |
346 |
actattttatgatgtgtatatttgtataaaacaaattatcgccagtgatgctgcaaatccctggccctgatgcatctaagagttctgaac |
435 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| | | ||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
41559409 |
actattttatgatgtgtacatttgcataaaacaaattatcgccactcacactgtgaatccctggccctgatgcatctaaaagttatgaac |
41559498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 41559531 - 41559600
Alignment:
| Q |
436 |
ttctgagaccttctgttgttttcacaaacttcattgatatcataatgatgtcagtgataaaatatgattc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||| ||||||||||| |
|
|
| T |
41559531 |
ttctgagaccttctgttgttttcacaaatttcattgatatcaaaataatgtcaatgatgaaatatgattc |
41559600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University