View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11571_low_74 (Length: 222)
Name: NF11571_low_74
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_74 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 13464193 - 13464296
Alignment:
| Q |
18 |
taaacaacaacttaaaagcatgtgaataaaagcaatataacaaatgcaataacattgtgtataactcgaaacactcaccaaaaacacaggaccacttcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13464193 |
taaacaacaacttaaaagcatgtgaataaaagcaatatgagaaatgcaataacattgtgtataactcgaaacactcaccaaaaacacaggaccacttcca |
13464292 |
T |
|
| Q |
118 |
cgcc |
121 |
Q |
| |
|
|||| |
|
|
| T |
13464293 |
cgcc |
13464296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 14079896 - 14079856
Alignment:
| Q |
80 |
aactcgaaacactcaccaaaaacacaggaccacttccacgcc |
121 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
14079896 |
aactcgaaacacttaccaaaa-cacaggaccacttccacgcc |
14079856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 14389924 - 14389884
Alignment:
| Q |
80 |
aactcgaaacactcaccaaaaacacaggaccacttccacgcc |
121 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
14389924 |
aactcgaaacacttaccaaaa-cacaggaccacttccacgcc |
14389884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University