View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11571_low_76 (Length: 216)

Name: NF11571_low_76
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11571_low_76
NF11571_low_76
[»] chr8 (5 HSPs)
chr8 (43-121)||(27538977-27539055)
chr8 (43-108)||(44496710-44496774)
chr8 (1-48)||(15654244-15654291)
chr8 (1-48)||(15642918-15642965)
chr8 (1-48)||(27536387-27536434)
[»] scaffold1526 (1 HSPs)
scaffold1526 (43-108)||(4-68)
[»] scaffold0642 (1 HSPs)
scaffold0642 (43-108)||(5224-5288)
[»] scaffold0345 (1 HSPs)
scaffold0345 (43-108)||(15137-15201)
[»] scaffold0105 (1 HSPs)
scaffold0105 (43-108)||(23780-23844)
[»] scaffold0016 (1 HSPs)
scaffold0016 (43-108)||(52688-52752)
[»] chr2 (1 HSPs)
chr2 (43-108)||(3379444-3379508)
[»] chr5 (1 HSPs)
chr5 (1-48)||(22003583-22003630)
[»] chr6 (1 HSPs)
chr6 (54-105)||(1098335-1098386)
[»] chr4 (1 HSPs)
chr4 (43-88)||(15707615-15707659)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 27538977 - 27539055
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaaatatatatctagc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27538977 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaagtatatatctagc 27539055  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 44496774 - 44496710
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  44496774 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcactttagcagccacatttgaaa 44496710  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15654244 - 15654291
Alignment:
Q  1 aagaaaagcaacaaaatcaaacccatgtcgacttcttggaatgttaaa 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15654244 aagaaaagcaacaaaatcaaacccatgtcgacttcttggaatgttaaa 15654291  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15642918 - 15642965
Alignment:
Q  1 aagaaaagcaacaaaatcaaacccatgtcgacttcttggaatgttaaa 48  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  15642918 aagaaaagcaacaaaatcagacccatgtcgatttcttggaatgttaaa 15642965  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27536387 - 27536434
Alignment:
Q  1 aagaaaagcaacaaaatcaaacccatgtcgacttcttggaatgttaaa 48  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  27536387 aagaaatgcaacaaaatcagacccatgtcgacttcttggaatgttaaa 27536434  T

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Target: scaffold1526 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 4 - 68
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcactttagcagccacatttgaaa 68  T

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Target: scaffold0642 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 5288 - 5224
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  5288 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcactttagcagccacatttgaaa 5224  T

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Target: scaffold0345 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 15201 - 15137
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  15201 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcactttagcagccacatttgaaa 15137  T

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Target: scaffold0105 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 23780 - 23844
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  23780 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcactttagcagccacatttgaaa 23844  T

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Target: scaffold0016 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 52688 - 52752
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  52688 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcactttagcagccacatttgaaa 52752  T

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Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 3379508 - 3379444
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcactttagcagccacatttgaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  3379508 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcactttagcagccacatttgaaa 3379444  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22003583 - 22003630
Alignment:
Q  1 aagaaaagcaacaaaatcaaacccatgtcgacttcttggaatgttaaa 48  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22003583 aagaaaagcaacaaaatcagacccatgtcgacttcttggaatgttaaa 22003630  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 1098386 - 1098335
Alignment:
Q  54 ttacataacattgcttttcaagtttcaggaatcactttagcagccacatttg 105  Q
    ||||||||||||| |||||| |||||| |||||||||||| |||||||||||    
T  1098386 ttacataacattgtttttcatgtttcatgaatcactttaggagccacatttg 1098335  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 15707659 - 15707615
Alignment:
Q  43 gttaaacaaatttacataacattgcttttcaagtttcaggaatcac 88  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  15707659 gttaaacaaatttacataacattg-ttttcaagtttcaagaatcac 15707615  T

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