View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_77 (Length: 204)
Name: NF11571_low_77
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 4159818 - 4159629
Alignment:
| Q |
1 |
agcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgact |
100 |
Q |
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| T |
4159818 |
agcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgact |
4159719 |
T |
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| Q |
101 |
ttggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatgttcatctca |
190 |
Q |
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| T |
4159718 |
ttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtggataatatttggtatgttcatctca |
4159629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 4172184 - 4172365
Alignment:
| Q |
1 |
agcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgact |
100 |
Q |
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| T |
4172184 |
agcataagcttcttcttcattttccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgctgcacgttatcgact |
4172283 |
T |
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| Q |
101 |
ttggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatgt |
182 |
Q |
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| T |
4172284 |
ttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgt |
4172365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 4177826 - 4177977
Alignment:
| Q |
35 |
tttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagt |
134 |
Q |
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| T |
4177826 |
tttgtaattatctcaaagaatccgttgtgcgcgaggtaacgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaattgaaactaaat |
4177925 |
T |
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| Q |
135 |
tggaaagagtaattggtttgccatgattgtggataatatttggtatgttcat |
186 |
Q |
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| T |
4177926 |
ttgaaagtgaaattggtttgccatgattgtgaataatatttggtatgttcat |
4177977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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