View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11571_low_8 (Length: 588)
Name: NF11571_low_8
Description: NF11571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11571_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 62 - 576
Target Start/End: Original strand, 33061258 - 33061779
Alignment:
| Q |
62 |
caacaaaaatgatatatatcatgaccatgtttggtcttgggtagccctaaaatacgattcatgtacaaatcaagccagtgagaagaggcatgcttttaaa |
161 |
Q |
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| T |
33061258 |
caacaaaaatgatatatatcatggccatgtttggtcttgggtagccctaaaatacgattcatgtacaaatcaagccagtgagaagaggcatgcttttaaa |
33061357 |
T |
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| Q |
162 |
ttaaatttaactttcttacatactaaaaatgcacctagaataaaataaatacacatctcatgtttcatactatgccagtagaaatgttcatgcaacatga |
261 |
Q |
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| T |
33061358 |
tttaatttaactttcttacatactaaaaatgcacctagaataaaataaatacacatctcatgtttcatactatgccagtagaaatgttcatgcaacatga |
33061457 |
T |
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| Q |
262 |
gtcttatgctgcaaaatgatacattaaacaccctcatgcacctctctacaaagcaattccctccatgaacactcaagaatgcatatatactgctcttgaa |
361 |
Q |
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| T |
33061458 |
gtcttatgctacaaaatgatccattaaacaccctcatgcacctctctacaaagcaattccctccatgaacacttaagaatgcatatatactgctgttgaa |
33061557 |
T |
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| Q |
362 |
caaataaccattatgtctacaatatgtatcatgtgccatgagttcacaaatcacaatcatgacaaagaagcaaaatcaacatccaagatata-------c |
454 |
Q |
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| T |
33061558 |
caaataaccattatgtctacaatatgtatcatgtgccattagttcacaaatcacaatcatgacaaagaagcaaaatcaacatccaagatatactaatctc |
33061657 |
T |
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| Q |
455 |
taatctctaatatgatcaaatccaagaagtttgatggacttgactagataaatgcgtcagatcggaccggttcatttatctttggactataaatttgtaa |
554 |
Q |
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| T |
33061658 |
taatctctaatatgatcaaatccaagaagtttgatggacttgactagataaatgagttagatcggaccggtccatttatctttggactataaatttgtaa |
33061757 |
T |
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| Q |
555 |
agagatttacttttcccaccct |
576 |
Q |
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| T |
33061758 |
agagatttactttttccaccct |
33061779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 33061087 - 33061136
Alignment:
| Q |
5 |
taatttagctcacagggttttacaatcgtgattaaattttttagcatcct |
54 |
Q |
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| T |
33061087 |
taatttagctcacagggttttacaatggagattaaattttttagcatcct |
33061136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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